Wall clock time and date at job start Tue Mar 31 2020 11:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 H 1.08993 * 109.46849 * 185.15843 * 3 2 1 5 5 C 1.50700 * 109.46889 * 305.16058 * 3 2 1 6 6 H 1.07997 * 119.99646 * 120.00361 * 5 3 2 7 7 C 1.37871 * 119.99795 * 299.99822 * 5 3 2 8 8 N 1.31509 * 120.00422 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99716 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46936 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47097 * 119.99897 * 9 7 5 12 12 H 1.48503 * 109.47150 * 239.99939 * 9 7 5 13 13 N 1.46907 * 109.46963 * 65.15975 * 3 2 1 14 14 C 1.46899 * 110.99559 * 85.89670 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.81821 * 14 13 3 16 16 C 1.33723 * 122.07332 * 94.74215 * 15 14 13 17 17 S 1.76261 * 108.21600 * 179.91067 * 16 15 14 18 18 C 1.76175 * 89.83630 * 0.28789 * 17 16 15 19 19 C 1.47874 * 125.47205 * 179.83292 * 18 17 16 20 20 C 1.39545 * 120.13829 * 179.72311 * 19 18 17 21 21 C 1.37970 * 119.84984 * 179.74848 * 20 19 18 22 22 C 1.38349 * 120.14560 * 0.55190 * 21 20 19 23 23 C 1.50694 * 119.85904 * 179.72226 * 22 21 20 24 24 C 1.38357 * 120.28445 * 359.69893 * 22 21 20 25 25 C 1.37969 * 120.14392 * 0.02689 * 24 22 21 26 26 N 1.30230 * 109.05506 * 359.83261 * 18 17 16 27 27 H 1.09005 * 109.46951 * 174.84716 * 1 2 3 28 28 H 1.08999 * 109.47125 * 54.84992 * 1 2 3 29 29 H 1.08994 * 109.47122 * 294.84434 * 1 2 3 30 30 H 1.09003 * 109.46986 * 119.99938 * 2 1 3 31 31 H 1.09000 * 109.46828 * 239.99879 * 2 1 3 32 32 H 0.97004 * 120.00237 * 180.02562 * 8 7 5 33 33 H 1.00905 * 110.99734 * 321.94494 * 13 3 2 34 34 H 1.08995 * 109.47219 * 294.81652 * 14 13 3 35 35 H 1.08999 * 109.47280 * 54.82329 * 14 13 3 36 36 H 1.08000 * 125.89295 * 359.97438 * 16 15 14 37 37 H 1.08003 * 120.07549 * 359.97438 * 20 19 18 38 38 H 1.08009 * 119.92632 * 180.25577 * 21 20 19 39 39 H 1.08997 * 109.47670 * 269.97636 * 23 22 21 40 40 H 1.09007 * 109.47336 * 29.97780 * 23 22 21 41 41 H 1.09004 * 109.47262 * 149.97650 * 23 22 21 42 42 H 1.07999 * 119.92661 * 180.02562 * 24 22 21 43 43 H 1.07996 * 120.07242 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4360 2.1888 -1.1616 6 1 0.8269 3.0627 -0.9839 7 6 1.6612 1.7559 -2.4511 8 7 2.4034 0.6921 -2.6675 9 14 0.9130 2.6814 -3.8910 10 1 0.1266 3.8343 -3.3835 11 1 1.9962 3.1733 -4.7798 12 1 0.0210 1.7720 -4.6543 13 7 1.6547 2.0981 1.2569 14 6 2.6432 1.8366 2.3116 15 6 2.2830 2.6253 3.5442 16 6 1.5637 2.0972 4.5401 17 16 1.3617 3.3272 5.7863 18 6 2.2861 4.4635 4.8075 19 6 2.5972 5.8607 5.1788 20 6 3.3461 6.6641 4.3181 21 6 3.6285 7.9685 4.6680 22 6 3.1806 8.4767 5.8743 23 6 3.4981 9.9003 6.2529 24 6 2.4420 7.6836 6.7345 25 6 2.1480 6.3794 6.3939 26 7 2.6514 3.8754 3.7045 27 1 -0.3633 -1.0236 -0.0923 28 1 -0.3633 0.5916 -0.8403 29 1 -0.3633 0.4318 0.9325 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 2.5621 0.3877 -3.5748 33 1 0.7319 1.8103 1.5467 34 1 2.6480 0.7729 2.5494 35 1 3.6323 2.1359 1.9649 36 1 1.1745 1.0903 4.5753 37 1 3.7008 6.2670 3.3784 38 1 4.2046 8.5927 4.0009 39 1 4.4411 9.9296 6.7987 40 1 3.5815 10.5063 5.3506 41 1 2.7012 10.2951 6.8832 42 1 2.0950 8.0864 7.6745 43 1 1.5711 5.7615 7.0659 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184096416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:19 Heat of formation + Delta-G solvation = 59.983835 kcal Electronic energy + Delta-G solvation = -22769.964498 eV Core-core repulsion = 19520.284311 eV Total energy + Delta-G solvation = -3249.680187 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.91812 -39.06504 -36.41189 -33.79230 -32.54578 -31.19709 -30.96539 -29.63834 -27.47741 -26.76145 -25.03786 -23.47545 -23.12080 -22.90026 -21.03961 -19.33562 -19.09209 -18.01884 -16.48887 -16.08275 -15.43112 -15.31627 -14.96188 -14.80192 -14.39305 -14.23817 -13.89991 -13.64348 -13.50635 -13.07113 -12.89756 -12.84791 -12.45697 -12.38545 -12.24348 -12.17101 -11.70978 -11.55817 -11.22165 -11.05378 -10.89646 -10.63141 -10.50646 -9.98910 -9.85056 -9.65847 -9.58013 -9.51234 -9.14804 -9.09398 -8.95838 -8.32632 -8.06596 -7.21438 -5.95454 -3.96368 0.25953 1.23553 1.36515 1.48465 1.76436 2.99167 3.33556 3.41692 3.47567 3.68870 3.96523 4.47591 4.58882 4.66800 4.82599 4.97514 5.09582 5.22900 5.26757 5.31960 5.36456 5.40461 5.48028 5.56537 5.68444 5.80137 5.87117 5.97903 6.07125 6.22838 6.33482 6.34670 6.37051 6.37625 6.44719 6.57050 6.75749 6.87935 7.26405 7.27425 7.51605 7.69728 7.90630 7.94446 8.28684 8.53973 8.62277 9.09635 9.67088 11.11716 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.002984 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.442170 B = 9381.504216 C =10821.740704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.035 0.965 5 C -0.485 4.485 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.675 5.675 14 C 0.128 3.872 15 C 0.095 3.905 16 C -0.246 4.246 17 S 0.057 5.943 18 C 0.112 3.888 19 C -0.026 4.026 20 C -0.065 4.065 21 C -0.122 4.122 22 C -0.076 4.076 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.096 4.096 26 N -0.435 5.435 27 H 0.023 0.977 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.010 0.990 31 H 0.094 0.906 32 H 0.258 0.742 33 H 0.326 0.674 34 H 0.036 0.964 35 H 0.084 0.916 36 H 0.176 0.824 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.126 0.874 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 10.539 20.615 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.524 4.524 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.306 5.306 14 C -0.005 4.005 15 C -0.038 4.038 16 C -0.385 4.385 17 S 0.313 5.687 18 C -0.164 4.164 19 C -0.030 4.030 20 C -0.086 4.086 21 C -0.140 4.140 22 C -0.077 4.077 23 C -0.173 4.173 24 C -0.140 4.140 25 C -0.116 4.116 26 N -0.148 5.148 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.029 0.971 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.144 0.856 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.194 0.806 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.144 0.856 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.705 11.273 20.876 23.736 hybrid contribution -0.507 -1.266 -1.340 1.912 sum 0.198 10.007 19.536 21.951 Atomic orbital electron populations 1.21603 0.97687 0.98688 1.00784 1.22126 0.95031 1.01088 1.00313 1.19252 0.96135 0.88517 0.85203 0.94753 1.21091 1.30327 1.11402 0.89573 0.91969 1.24902 0.95587 0.95188 0.98707 1.69886 1.39132 1.24101 1.20571 0.86520 0.78965 0.79904 0.82527 1.19748 1.21165 1.21271 1.60764 1.03316 1.63431 1.03091 1.20502 0.98496 0.93957 0.87502 1.20362 0.96677 0.89530 0.97200 1.26797 1.09210 1.04712 0.97820 1.84611 1.53868 1.06322 1.23920 1.25829 1.00232 0.97630 0.92663 1.17834 1.00836 0.88792 0.95513 1.21377 0.95068 0.92925 0.99259 1.21053 1.00910 0.95431 0.96606 1.20079 0.96904 0.96382 0.94365 1.20827 1.02046 0.92206 1.02184 1.20859 0.99828 0.93483 0.99814 1.21119 0.99381 0.95901 0.95207 1.66341 1.21642 1.09072 1.17787 0.95747 0.91172 0.95483 0.97090 0.88775 0.93194 0.85562 0.94565 0.89803 0.80646 0.84246 0.85371 0.90995 0.91309 0.91457 0.85565 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.40 37.16 0.35 -2.42 16 2 C -0.15 -3.39 5.51 -26.73 -0.15 -3.53 16 3 C 0.22 5.36 2.33 -68.86 -0.16 5.20 16 4 H 0.03 0.94 7.70 -51.93 -0.40 0.54 16 5 C -0.48 -13.27 7.25 -34.44 -0.25 -13.52 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 8 N -0.90 -25.36 11.38 55.43 0.63 -24.73 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.67 -14.65 6.19 -109.22 -0.68 -15.33 16 14 C 0.13 2.40 5.92 -4.97 -0.03 2.37 16 15 C 0.10 1.63 6.24 -84.40 -0.53 1.10 16 16 C -0.25 -3.52 11.06 29.15 0.32 -3.20 16 17 S 0.06 0.72 22.40 -107.50 -2.41 -1.69 16 18 C 0.11 1.68 7.35 -14.29 -0.11 1.57 16 19 C -0.03 -0.34 5.87 -104.98 -0.62 -0.96 16 20 C -0.06 -0.83 9.68 -39.19 -0.38 -1.20 16 21 C -0.12 -1.25 9.68 -39.64 -0.38 -1.64 16 22 C -0.08 -0.69 5.89 -104.54 -0.62 -1.30 16 23 C -0.12 -0.72 10.00 36.00 0.36 -0.36 16 24 C -0.12 -1.10 9.68 -39.64 -0.38 -1.48 16 25 C -0.10 -1.01 9.61 -39.19 -0.38 -1.39 16 26 N -0.44 -7.67 10.11 -7.55 -0.08 -7.74 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 1.64 6.85 -51.93 -0.36 1.29 16 29 H 0.03 0.51 6.63 -51.93 -0.34 0.17 16 30 H 0.01 0.22 7.50 -51.93 -0.39 -0.17 16 31 H 0.09 2.45 6.23 -51.93 -0.32 2.13 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.33 6.79 6.69 -39.29 -0.26 6.52 16 34 H 0.04 0.63 7.48 -51.93 -0.39 0.24 16 35 H 0.08 1.66 7.93 -51.93 -0.41 1.25 16 36 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 37 H 0.14 1.92 7.82 -52.48 -0.41 1.50 16 38 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 41 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 1.12 7.30 -52.49 -0.38 0.74 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -29.77 366.59 -11.23 -41.00 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.17 Total: 5.72 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -3.04 Total: -19.30 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.12 Total: -47.80 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.41 Total: -1.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.77 -11.23 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184096416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.981 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds