Wall clock time and date at job start Tue Mar 31 2020 11:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 H 1.08993 * 109.46849 * 185.15843 * 3 2 1 5 5 C 1.50700 * 109.46889 * 305.16058 * 3 2 1 6 6 H 1.07997 * 119.99646 * 120.00361 * 5 3 2 7 7 C 1.37871 * 119.99795 * 299.99822 * 5 3 2 8 8 N 1.31509 * 120.00422 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99716 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46936 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47097 * 119.99897 * 9 7 5 12 12 H 1.48503 * 109.47150 * 239.99939 * 9 7 5 13 13 N 1.46907 * 109.46963 * 65.15975 * 3 2 1 14 14 C 1.46899 * 110.99559 * 85.89670 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.81821 * 14 13 3 16 16 C 1.33723 * 122.07332 * 94.74215 * 15 14 13 17 17 S 1.76261 * 108.21600 * 179.91067 * 16 15 14 18 18 C 1.76175 * 89.83630 * 0.28789 * 17 16 15 19 19 C 1.47874 * 125.47205 * 179.83292 * 18 17 16 20 20 C 1.39545 * 120.13829 * 179.72311 * 19 18 17 21 21 C 1.37970 * 119.84984 * 179.74848 * 20 19 18 22 22 C 1.38349 * 120.14560 * 0.55190 * 21 20 19 23 23 C 1.50694 * 119.85904 * 179.72226 * 22 21 20 24 24 C 1.38357 * 120.28445 * 359.69893 * 22 21 20 25 25 C 1.37969 * 120.14392 * 0.02689 * 24 22 21 26 26 N 1.30230 * 109.05506 * 359.83261 * 18 17 16 27 27 H 1.09005 * 109.46951 * 174.84716 * 1 2 3 28 28 H 1.08999 * 109.47125 * 54.84992 * 1 2 3 29 29 H 1.08994 * 109.47122 * 294.84434 * 1 2 3 30 30 H 1.09003 * 109.46986 * 119.99938 * 2 1 3 31 31 H 1.09000 * 109.46828 * 239.99879 * 2 1 3 32 32 H 0.97004 * 120.00237 * 180.02562 * 8 7 5 33 33 H 1.00905 * 110.99734 * 321.94494 * 13 3 2 34 34 H 1.08995 * 109.47219 * 294.81652 * 14 13 3 35 35 H 1.08999 * 109.47280 * 54.82329 * 14 13 3 36 36 H 1.08000 * 125.89295 * 359.97438 * 16 15 14 37 37 H 1.08003 * 120.07549 * 359.97438 * 20 19 18 38 38 H 1.08009 * 119.92632 * 180.25577 * 21 20 19 39 39 H 1.08997 * 109.47670 * 269.97636 * 23 22 21 40 40 H 1.09007 * 109.47336 * 29.97780 * 23 22 21 41 41 H 1.09004 * 109.47262 * 149.97650 * 23 22 21 42 42 H 1.07999 * 119.92661 * 180.02562 * 24 22 21 43 43 H 1.07996 * 120.07242 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4360 2.1888 -1.1616 6 1 0.8269 3.0627 -0.9839 7 6 1.6612 1.7559 -2.4511 8 7 2.4034 0.6921 -2.6675 9 14 0.9130 2.6814 -3.8910 10 1 0.1266 3.8343 -3.3835 11 1 1.9962 3.1733 -4.7798 12 1 0.0210 1.7720 -4.6543 13 7 1.6547 2.0981 1.2569 14 6 2.6432 1.8366 2.3116 15 6 2.2830 2.6253 3.5442 16 6 1.5637 2.0972 4.5401 17 16 1.3617 3.3272 5.7863 18 6 2.2861 4.4635 4.8075 19 6 2.5972 5.8607 5.1788 20 6 3.3461 6.6641 4.3181 21 6 3.6285 7.9685 4.6680 22 6 3.1806 8.4767 5.8743 23 6 3.4981 9.9003 6.2529 24 6 2.4420 7.6836 6.7345 25 6 2.1480 6.3794 6.3939 26 7 2.6514 3.8754 3.7045 27 1 -0.3633 -1.0236 -0.0923 28 1 -0.3633 0.5916 -0.8403 29 1 -0.3633 0.4318 0.9325 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 2.5621 0.3877 -3.5748 33 1 0.7319 1.8103 1.5467 34 1 2.6480 0.7729 2.5494 35 1 3.6323 2.1359 1.9649 36 1 1.1745 1.0903 4.5753 37 1 3.7008 6.2670 3.3784 38 1 4.2046 8.5927 4.0009 39 1 4.4411 9.9296 6.7987 40 1 3.5815 10.5063 5.3506 41 1 2.7012 10.2951 6.8832 42 1 2.0950 8.0864 7.6745 43 1 1.5711 5.7615 7.0659 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184096416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:18 Heat of formation + Delta-G solvation = 43.404701 kcal Electronic energy + Delta-G solvation = -22770.683423 eV Core-core repulsion = 19520.284311 eV Total energy + Delta-G solvation = -3250.399112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.98729 -40.00099 -38.20357 -34.96353 -34.11299 -32.65631 -31.96996 -30.93306 -28.60821 -28.25730 -26.60495 -25.13517 -24.41262 -23.75196 -21.96659 -21.22781 -20.23573 -19.17321 -18.06183 -17.48822 -16.82305 -16.44922 -16.21868 -16.09766 -15.79783 -15.40489 -15.07781 -14.71286 -14.47909 -14.42912 -14.34440 -14.05961 -13.96085 -13.80832 -13.48372 -12.98538 -12.95675 -12.85352 -12.69275 -12.45664 -12.41838 -12.20188 -11.94732 -11.90077 -11.63754 -11.43187 -11.00485 -10.70188 -10.64309 -10.44647 -10.12940 -9.94317 -9.06054 -8.93275 -8.06750 -6.14825 -0.74294 0.30325 0.43016 0.53549 0.64252 1.39815 1.42458 1.54037 1.83644 2.45096 2.83112 2.93986 3.21761 3.72968 3.83737 3.91453 4.03781 4.05337 4.23378 4.31854 4.40746 4.47275 4.54007 4.55040 4.59508 4.69540 4.78321 4.82030 4.86751 4.90818 5.02870 5.09479 5.13286 5.28127 5.34037 5.41212 5.42285 5.49953 5.63992 5.70344 5.74070 5.81784 5.99014 6.30310 6.64697 6.76561 6.85409 6.96662 7.52560 8.98731 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.002984 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.442170 B = 9381.504216 C =10821.740704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.138 4.138 3 C 0.223 3.777 4 H -0.003 1.003 5 C -0.499 4.499 6 H 0.047 0.953 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.950 3.050 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.135 3.865 15 C 0.068 3.932 16 C -0.245 4.245 17 S 0.130 5.870 18 C 0.096 3.904 19 C -0.055 4.055 20 C -0.087 4.087 21 C -0.129 4.129 22 C -0.071 4.071 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.095 4.095 26 N -0.481 5.481 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.260 0.740 33 H 0.333 0.667 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.200 0.800 37 H 0.113 0.887 38 H 0.142 0.858 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.160 0.840 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 11.738 23.309 26.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.178 4.178 3 C 0.115 3.885 4 H 0.015 0.985 5 C -0.538 4.538 6 H 0.065 0.935 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.204 1.204 13 N -0.314 5.314 14 C 0.003 3.997 15 C -0.065 4.065 16 C -0.385 4.385 17 S 0.387 5.613 18 C -0.178 4.178 19 C -0.059 4.059 20 C -0.109 4.109 21 C -0.147 4.147 22 C -0.072 4.072 23 C -0.171 4.171 24 C -0.136 4.136 25 C -0.115 4.115 26 N -0.195 5.195 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.217 0.783 37 H 0.132 0.868 38 H 0.160 0.840 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.178 0.822 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.767 12.475 23.592 26.698 hybrid contribution -0.015 -1.533 -2.033 2.546 sum -0.782 10.942 21.559 24.190 Atomic orbital electron populations 1.21484 0.95895 0.99704 1.00790 1.21952 0.96542 0.99542 0.99723 1.18981 0.93657 0.89685 0.86176 0.98483 1.21265 1.30329 1.11203 0.90966 0.93505 1.25563 0.95953 0.95921 1.00905 1.70006 1.39887 1.25062 1.21035 0.85618 0.78254 0.78805 0.79631 1.19733 1.20941 1.20390 1.60593 1.04292 1.63460 1.03061 1.20343 0.96502 0.95234 0.87600 1.20077 0.99064 0.89888 0.97463 1.27113 1.07568 1.06188 0.97615 1.84246 1.51830 1.03755 1.21512 1.26227 1.00194 0.98782 0.92621 1.18024 1.02514 0.88341 0.96988 1.21319 0.96410 0.94326 0.98819 1.21263 1.01117 0.94569 0.97731 1.20484 0.95494 0.97864 0.93384 1.20903 1.03221 0.90091 1.02924 1.21279 0.98802 0.92672 1.00853 1.21336 0.99081 0.96873 0.94242 1.66281 1.23565 1.09783 1.19882 0.93652 0.93761 0.93321 0.95095 0.91819 0.93126 0.84828 0.92960 0.92246 0.78280 0.86842 0.84018 0.89742 0.90791 0.89788 0.82230 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.40 71.98 0.68 -4.38 16 2 C -0.14 -6.46 5.51 30.60 0.17 -6.29 16 3 C 0.22 11.48 2.33 44.17 0.10 11.58 16 4 H 0.00 -0.16 7.70 -2.39 -0.02 -0.18 16 5 C -0.50 -28.16 7.25 25.60 0.19 -27.98 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 7 C 0.01 0.83 5.28 84.65 0.45 1.28 16 8 N -0.92 -53.29 11.38 21.44 0.24 -53.05 16 9 Si 0.95 45.00 29.54 68.60 2.03 47.03 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 N -0.68 -30.48 6.19 -499.45 -3.09 -33.57 16 14 C 0.14 5.25 5.92 85.56 0.51 5.75 16 15 C 0.07 2.35 6.24 41.61 0.26 2.61 16 16 C -0.25 -6.67 11.06 66.79 0.74 -5.93 16 17 S 0.13 3.01 22.40 -56.49 -1.27 1.74 16 18 C 0.10 2.91 7.35 87.48 0.64 3.55 16 19 C -0.05 -1.44 5.87 -20.10 -0.12 -1.56 16 20 C -0.09 -2.33 9.68 22.52 0.22 -2.11 16 21 C -0.13 -2.60 9.68 22.23 0.22 -2.39 16 22 C -0.07 -1.12 5.89 -19.81 -0.12 -1.24 16 23 C -0.12 -1.04 10.00 71.23 0.71 -0.33 16 24 C -0.12 -1.78 9.68 22.23 0.22 -1.56 16 25 C -0.10 -1.83 9.61 22.52 0.22 -1.62 16 26 N -0.48 -17.65 10.11 -177.79 -1.80 -19.45 16 27 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.04 2.06 6.85 -2.39 -0.02 2.05 16 29 H 0.05 1.79 6.63 -2.39 -0.02 1.77 16 30 H 0.03 1.29 7.50 -2.39 -0.02 1.27 16 31 H 0.06 3.39 6.23 -2.39 -0.01 3.38 16 32 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.33 13.85 6.69 -89.69 -0.60 13.25 16 34 H 0.05 1.82 7.48 -2.39 -0.02 1.81 16 35 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 36 H 0.20 4.27 8.06 -2.91 -0.02 4.24 16 37 H 0.11 3.51 7.82 -2.91 -0.02 3.48 16 38 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.62 8.08 -2.38 -0.02 0.61 16 41 H 0.08 0.52 8.08 -2.38 -0.02 0.50 16 42 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.14 2.13 7.30 -2.91 -0.02 2.11 16 Total: -1.00 -67.25 366.59 1.60 -65.65 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.42 Total: 22.26 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 5.07 Total: -30.62 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -4.65 Total: -106.07 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.27 Total: 1.74 kcal Total: -67.25 1.60 -65.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184096416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.056 kcal (2) G-P(sol) polarization free energy of solvation -67.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds