Wall clock time and date at job start Tue Mar 31 2020 11:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46890 * 2 1 4 4 H 1.09002 * 109.46948 * 174.09084 * 3 2 1 5 5 C 1.50694 * 109.47097 * 54.09229 * 3 2 1 6 6 H 1.07997 * 120.00420 * 240.00103 * 5 3 2 7 7 C 1.37879 * 119.99799 * 59.99777 * 5 3 2 8 8 N 1.31507 * 120.00222 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99995 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47341 * 89.99762 * 9 7 5 11 11 H 1.48507 * 109.46932 * 210.00190 * 9 7 5 12 12 H 1.48504 * 109.46952 * 329.99852 * 9 7 5 13 13 N 1.46901 * 109.47475 * 294.09150 * 3 2 1 14 14 C 1.46895 * 111.00009 * 275.77773 * 13 3 2 15 15 C 1.50703 * 109.47130 * 176.22111 * 14 13 3 16 16 C 1.33725 * 122.07894 * 94.99603 * 15 14 13 17 17 S 1.76250 * 108.22252 * 180.02562 * 16 15 14 18 18 C 1.76179 * 89.83564 * 0.02562 * 17 16 15 19 19 C 1.47864 * 125.47653 * 180.02562 * 18 17 16 20 20 C 1.39546 * 120.14371 * 179.69681 * 19 18 17 21 21 C 1.37974 * 119.85358 * 179.76757 * 20 19 18 22 22 C 1.38350 * 120.14185 * 0.53285 * 21 20 19 23 23 C 1.50702 * 119.85595 * 179.72324 * 22 21 20 24 24 C 1.38348 * 120.28768 * 359.69692 * 22 21 20 25 25 C 1.37970 * 120.14354 * 0.04616 * 24 22 21 26 26 N 1.30232 * 109.05371 * 359.73658 * 18 17 16 27 27 H 1.08994 * 109.47295 * 58.55801 * 1 2 3 28 28 H 1.09000 * 109.46686 * 298.55256 * 1 2 3 29 29 H 1.09001 * 109.46638 * 178.55917 * 1 2 3 30 30 H 1.08998 * 109.47564 * 120.00737 * 2 1 3 31 31 H 1.09006 * 109.46533 * 240.00486 * 2 1 3 32 32 H 0.97001 * 120.00275 * 179.97438 * 8 7 5 33 33 H 1.00909 * 110.99778 * 39.72427 * 13 3 2 34 34 H 1.09002 * 109.47243 * 296.21883 * 14 13 3 35 35 H 1.09001 * 109.47481 * 56.21852 * 14 13 3 36 36 H 1.08000 * 125.88815 * 0.02714 * 16 15 14 37 37 H 1.07998 * 120.07675 * 0.02562 * 20 19 18 38 38 H 1.07997 * 119.92678 * 180.25424 * 21 20 19 39 39 H 1.08992 * 109.46941 * 269.97557 * 23 22 21 40 40 H 1.08998 * 109.47431 * 29.97594 * 23 22 21 41 41 H 1.09000 * 109.46843 * 149.97697 * 23 22 21 42 42 H 1.08003 * 119.92710 * 180.02562 * 24 22 21 43 43 H 1.07996 * 120.07234 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1058 5 6 1.4218 2.1938 1.1508 6 1 0.8149 3.0669 0.9619 7 6 1.6310 1.7665 2.4449 8 7 2.3704 0.7036 2.6750 9 14 0.8641 2.6974 3.8714 10 1 -0.4778 2.1339 4.1659 11 1 1.7302 2.5664 5.0706 12 1 0.7305 4.1320 3.5116 13 7 1.6702 2.0927 -1.2643 14 6 2.6509 1.7941 -2.3164 15 6 2.1914 2.3990 -3.6179 16 6 2.6097 3.6006 -4.0294 17 16 1.8508 3.9464 -5.5821 18 6 1.0224 2.3929 -5.5175 19 6 0.0992 1.8691 -6.5469 20 6 -0.4932 0.6161 -6.3846 21 6 -1.3575 0.1352 -7.3467 22 6 -1.6287 0.8877 -8.4755 23 6 -2.5689 0.3535 -9.5252 24 6 -1.0409 2.1286 -8.6447 25 6 -0.1789 2.6232 -7.6876 26 7 1.3585 1.7771 -4.4202 27 1 -0.3633 0.5360 -0.8767 28 1 -0.3633 0.4912 0.9027 29 1 -0.3632 -1.0274 -0.0258 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 2.5179 0.4032 3.5854 33 1 0.7403 1.8247 -1.5503 34 1 3.6181 2.2150 -2.0416 35 1 2.7440 0.7141 -2.4305 36 1 3.2945 4.2476 -3.5014 37 1 -0.2790 0.0258 -5.5060 38 1 -1.8198 -0.8326 -7.2203 39 1 -2.0039 -0.2163 -10.2628 40 1 -3.3087 -0.2941 -9.0547 41 1 -3.0740 1.1847 -10.0173 42 1 -1.2570 2.7113 -9.5280 43 1 0.2796 3.5919 -7.8210 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184096429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:21 Heat of formation + Delta-G solvation = 42.959362 kcal Electronic energy + Delta-G solvation = -22860.619007 eV Core-core repulsion = 19610.200583 eV Total energy + Delta-G solvation = -3250.418424 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.01453 -40.01059 -38.19368 -34.95236 -34.11186 -32.66030 -31.97379 -30.94285 -28.64242 -28.28481 -26.53743 -25.13468 -24.46577 -23.76449 -21.98459 -21.23013 -20.27968 -19.04240 -18.09321 -17.50958 -16.83044 -16.54503 -16.18887 -16.10332 -15.82642 -15.36706 -15.04686 -14.73383 -14.47935 -14.43916 -14.39458 -14.21288 -13.96725 -13.73218 -13.25242 -12.98995 -12.94212 -12.89165 -12.72529 -12.48044 -12.43970 -12.22736 -11.95925 -11.83637 -11.75256 -11.45707 -11.00612 -10.74003 -10.68381 -10.44424 -10.16225 -9.94605 -9.08514 -8.95593 -8.06131 -6.14586 -0.74584 0.28908 0.42795 0.53143 0.63653 1.42611 1.43827 1.54004 1.79827 2.45742 2.82513 2.90095 3.22697 3.71537 3.88091 3.93466 4.04092 4.05356 4.12626 4.33410 4.42398 4.46994 4.51200 4.55226 4.59205 4.72790 4.78622 4.80026 4.86325 4.90700 5.03034 5.08956 5.13184 5.28065 5.31626 5.39256 5.42029 5.48939 5.63804 5.63864 5.71348 5.80515 5.98477 6.28347 6.61641 6.70507 6.76552 6.95736 7.52684 8.99617 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.018543 B = 0.002803 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.631268 B = 9987.385293 C =10822.586363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.137 4.137 3 C 0.222 3.778 4 H 0.004 0.996 5 C -0.500 4.500 6 H 0.050 0.950 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.678 5.678 14 C 0.135 3.865 15 C 0.060 3.940 16 C -0.233 4.233 17 S 0.130 5.870 18 C 0.099 3.901 19 C -0.054 4.054 20 C -0.086 4.086 21 C -0.128 4.128 22 C -0.071 4.071 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.096 4.096 26 N -0.487 5.487 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.021 0.979 32 H 0.260 0.740 33 H 0.330 0.670 34 H 0.083 0.917 35 H 0.027 0.973 36 H 0.195 0.805 37 H 0.117 0.883 38 H 0.144 0.856 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.158 0.842 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 2.526 -26.370 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.177 4.177 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.539 4.539 6 H 0.069 0.931 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.309 5.309 14 C 0.003 3.997 15 C -0.072 4.072 16 C -0.373 4.373 17 S 0.387 5.613 18 C -0.176 4.176 19 C -0.058 4.058 20 C -0.107 4.107 21 C -0.146 4.146 22 C -0.072 4.072 23 C -0.172 4.172 24 C -0.136 4.136 25 C -0.116 4.116 26 N -0.201 5.201 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.212 0.788 37 H 0.135 0.865 38 H 0.161 0.839 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.176 0.824 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.284 3.427 -26.604 27.550 hybrid contribution 0.229 -1.051 2.125 2.382 sum -6.055 2.376 -24.479 25.328 Atomic orbital electron populations 1.21419 0.96167 0.99223 1.00523 1.21941 0.96344 1.00130 0.99250 1.18988 0.94107 0.89416 0.86155 0.97769 1.21213 1.30461 1.11401 0.90817 0.93144 1.25580 0.95933 0.95920 1.00880 1.70006 1.40032 1.25212 1.20746 0.85644 0.78317 0.79166 0.79020 1.20255 1.21046 1.19705 1.60878 1.04598 1.62637 1.02797 1.20403 0.96423 0.96882 0.85974 1.20035 0.96894 0.93067 0.97172 1.27059 1.08953 1.01013 1.00229 1.84296 1.39782 1.19620 1.17629 1.26167 1.01176 0.94426 0.95807 1.17998 0.98223 0.96288 0.93294 1.21318 0.95699 0.94358 0.99356 1.21267 0.98445 1.01087 0.93763 1.20487 0.96883 0.94171 0.95678 1.20905 0.97556 1.02187 0.96535 1.21269 0.96699 0.96030 0.99648 1.21337 0.98290 0.99573 0.92418 1.66293 1.14754 1.35420 1.03648 0.94127 0.93730 0.93823 0.91654 0.96006 0.93112 0.85190 0.89829 0.95453 0.78828 0.86475 0.83857 0.89787 0.90689 0.89892 0.82397 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 9.39 71.98 0.68 -4.50 16 2 C -0.14 -6.72 5.50 30.60 0.17 -6.55 16 3 C 0.22 11.42 2.33 44.17 0.10 11.52 16 4 H 0.00 0.25 7.86 -2.39 -0.02 0.23 16 5 C -0.50 -27.83 7.35 25.60 0.19 -27.64 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.02 0.84 5.22 84.66 0.44 1.29 16 8 N -0.92 -53.04 11.39 21.45 0.24 -52.80 16 9 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 N -0.68 -30.48 6.24 -499.47 -3.12 -33.60 16 14 C 0.14 5.27 5.89 85.56 0.50 5.78 16 15 C 0.06 2.08 6.16 41.61 0.26 2.34 16 16 C -0.23 -6.72 11.06 66.79 0.74 -5.98 16 17 S 0.13 3.06 22.40 -56.49 -1.27 1.80 16 18 C 0.10 2.85 7.35 87.48 0.64 3.50 16 19 C -0.05 -1.34 5.87 -20.10 -0.12 -1.46 16 20 C -0.09 -2.08 9.68 22.52 0.22 -1.86 16 21 C -0.13 -2.32 9.68 22.23 0.22 -2.11 16 22 C -0.07 -1.03 5.89 -19.81 -0.12 -1.15 16 23 C -0.12 -0.93 10.01 71.24 0.71 -0.22 16 24 C -0.12 -1.68 9.68 22.23 0.22 -1.46 16 25 C -0.10 -1.76 9.61 22.52 0.22 -1.55 16 26 N -0.49 -16.81 10.12 -177.79 -1.80 -18.61 16 27 H 0.04 1.70 6.42 -2.39 -0.02 1.68 16 28 H 0.04 2.16 7.05 -2.39 -0.02 2.14 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 3.57 6.25 -2.39 -0.01 3.56 16 31 H 0.02 0.99 7.24 -2.38 -0.02 0.98 16 32 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.33 14.87 6.55 -89.69 -0.59 14.28 16 34 H 0.08 3.13 8.07 -2.39 -0.02 3.11 16 35 H 0.03 1.12 7.23 -2.39 -0.02 1.10 16 36 H 0.19 4.84 8.06 -2.91 -0.02 4.82 16 37 H 0.12 3.21 7.82 -2.91 -0.02 3.19 16 38 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.08 0.53 8.14 -2.39 -0.02 0.52 16 40 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 41 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 42 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 43 H 0.14 2.05 7.30 -2.91 -0.02 2.03 16 Total: -1.00 -64.55 366.21 1.58 -62.97 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.43 Total: 23.88 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 5.06 Total: -30.06 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -4.67 Total: -105.01 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.27 Total: 1.80 kcal Total: -64.55 1.58 -62.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184096429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.933 kcal (2) G-P(sol) polarization free energy of solvation -64.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds