Wall clock time and date at job start Tue Mar 31 2020 11:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46880 * 2 1 4 4 H 1.09000 * 109.47181 * 179.25045 * 3 2 1 5 5 C 1.50704 * 109.47152 * 299.24698 * 3 2 1 6 6 H 1.07995 * 120.00100 * 119.99563 * 5 3 2 7 7 C 1.37878 * 119.99611 * 300.00212 * 5 3 2 8 8 N 1.31524 * 119.99601 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 120.00342 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47388 * 90.00263 * 9 7 5 11 11 H 1.48504 * 109.47389 * 210.00278 * 9 7 5 12 12 H 1.48501 * 109.47089 * 330.00002 * 9 7 5 13 13 N 1.46895 * 109.47309 * 59.24436 * 3 2 1 14 14 C 1.46901 * 111.00275 * 85.93611 * 13 3 2 15 15 C 1.50695 * 109.47564 * 175.54743 * 14 13 3 16 16 C 1.33729 * 125.88951 * 90.00109 * 15 14 13 17 17 N 1.31303 * 115.84583 * 179.97438 * 16 15 14 18 18 C 1.30222 * 117.04470 * 0.02562 * 17 16 15 19 19 C 1.47870 * 125.47674 * 179.97438 * 18 17 16 20 20 C 1.39543 * 120.14373 * 179.75157 * 19 18 17 21 21 C 1.37972 * 119.85208 * 179.69862 * 20 19 18 22 22 C 1.38348 * 120.14196 * 0.59448 * 21 20 19 23 23 C 1.50707 * 119.85500 * 179.69823 * 22 21 20 24 24 C 1.38351 * 120.29025 * 359.68163 * 22 21 20 25 25 C 1.37963 * 120.14117 * 0.02562 * 24 22 21 26 26 S 1.76182 * 109.05327 * 359.73173 * 18 17 16 27 27 H 1.08998 * 109.47388 * 295.55998 * 1 2 3 28 28 H 1.09004 * 109.46681 * 175.56217 * 1 2 3 29 29 H 1.08994 * 109.47363 * 55.55970 * 1 2 3 30 30 H 1.08998 * 109.47139 * 119.99726 * 2 1 3 31 31 H 1.08996 * 109.46971 * 240.00302 * 2 1 3 32 32 H 0.96993 * 119.99568 * 179.97438 * 8 7 5 33 33 H 1.00901 * 111.00549 * 209.89266 * 13 3 2 34 34 H 1.08998 * 109.46976 * 295.55496 * 14 13 3 35 35 H 1.09004 * 109.46501 * 55.54866 * 14 13 3 36 36 H 1.07999 * 122.07663 * 359.97438 * 16 15 14 37 37 H 1.07996 * 120.07679 * 359.97038 * 20 19 18 38 38 H 1.08000 * 119.92805 * 180.29107 * 21 20 19 39 39 H 1.08997 * 109.47291 * 269.97810 * 23 22 21 40 40 H 1.08999 * 109.46995 * 29.98088 * 23 22 21 41 41 H 1.09004 * 109.46613 * 149.98083 * 23 22 21 42 42 H 1.07999 * 119.93175 * 179.97438 * 24 22 21 43 43 H 1.08005 * 120.07367 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0134 5 6 1.5529 2.1475 -1.2397 6 1 0.9308 3.0259 -1.1522 7 6 1.9015 1.6709 -2.4857 8 7 1.4760 2.2859 -3.5676 9 14 2.9780 0.1519 -2.6371 10 1 2.1206 -1.0595 -2.6876 11 1 3.7853 0.2391 -3.8805 12 1 3.8842 0.0684 -1.4635 13 7 1.5355 2.1403 1.1901 14 6 2.4168 1.9177 2.3441 15 6 1.9295 2.7340 3.5134 16 6 1.0519 2.3317 4.4388 17 7 0.7661 3.2066 5.3752 18 6 1.3602 4.3633 5.3061 19 6 1.1766 5.4806 6.2571 20 6 1.8764 6.6747 6.0789 21 6 1.6957 7.7156 6.9663 22 6 0.8325 7.5729 8.0380 23 6 0.6452 8.7117 9.0072 24 6 0.1400 6.3896 8.2235 25 6 0.3071 5.3433 7.3400 26 16 2.4234 4.3808 3.9013 27 1 -0.3634 0.4434 0.9271 28 1 -0.3633 -1.0246 -0.0795 29 1 -0.3634 0.5812 -0.8475 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.7215 1.9509 -4.4441 33 1 1.4187 3.1261 1.0092 34 1 2.4075 0.8606 2.6098 35 1 3.4327 2.2192 2.0888 36 1 0.6060 1.3483 4.4173 37 1 2.5545 6.7854 5.2457 38 1 2.2332 8.6419 6.8269 39 1 1.3719 8.6245 9.8150 40 1 0.7912 9.6587 8.4877 41 1 -0.3630 8.6753 9.4200 42 1 -0.5321 6.2844 9.0623 43 1 -0.2343 4.4202 7.4856 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184096532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:13 Heat of formation + Delta-G solvation = 63.964971 kcal Electronic energy + Delta-G solvation = -22560.782465 eV Core-core repulsion = 19311.274912 eV Total energy + Delta-G solvation = -3249.507552 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.91070 -39.01646 -36.75788 -33.90475 -32.91708 -31.61482 -31.26164 -29.85407 -28.02386 -26.53511 -24.87351 -23.43609 -23.14945 -22.74686 -21.64266 -19.45788 -19.38457 -17.95561 -16.77362 -16.36266 -15.60727 -15.43778 -15.23731 -14.72007 -14.61395 -14.10289 -14.05440 -13.73351 -13.66569 -13.53587 -13.33640 -13.03125 -12.66470 -12.52436 -12.43501 -12.25593 -11.87103 -11.60626 -11.34036 -11.21123 -10.99229 -10.72455 -10.60281 -10.26479 -10.05440 -9.66021 -9.65477 -9.36762 -9.23702 -9.17979 -9.01635 -8.62339 -8.11199 -7.61386 -6.14504 -4.14067 0.18983 1.14663 1.29409 1.41355 1.75476 2.91180 3.23550 3.32213 3.34474 3.60406 3.93614 4.33943 4.52853 4.58057 4.74299 4.93333 4.94372 5.07354 5.15278 5.18080 5.21529 5.25322 5.40705 5.42473 5.46596 5.73005 5.79061 5.87131 5.98739 6.04393 6.11186 6.16946 6.21022 6.28327 6.34368 6.41952 6.65778 6.66559 6.85181 7.05344 7.16513 7.44516 7.53522 7.73255 7.80107 8.19548 8.52669 8.89439 9.47102 10.98205 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.028980 B = 0.002481 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.967062 B =11281.730914 C =11696.837746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.185 3.815 4 H 0.002 0.998 5 C -0.515 4.515 6 H 0.079 0.921 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.887 3.113 10 H -0.276 1.276 11 H -0.297 1.297 12 H -0.269 1.269 13 N -0.668 5.668 14 C 0.130 3.870 15 C -0.183 4.183 16 C 0.043 3.957 17 N -0.460 5.460 18 C 0.095 3.905 19 C -0.023 4.023 20 C -0.095 4.095 21 C -0.119 4.119 22 C -0.077 4.077 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.071 4.071 26 S 0.088 5.912 27 H 0.054 0.946 28 H 0.021 0.979 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.341 0.659 34 H 0.088 0.912 35 H 0.037 0.963 36 H 0.176 0.824 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.127 0.873 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.119 8.449 23.614 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.076 3.924 4 H 0.020 0.980 5 C -0.553 4.553 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.300 5.300 14 C -0.002 4.002 15 C -0.304 4.304 16 C -0.109 4.109 17 N -0.173 5.173 18 C -0.179 4.179 19 C -0.027 4.027 20 C -0.116 4.116 21 C -0.137 4.137 22 C -0.078 4.078 23 C -0.173 4.173 24 C -0.141 4.141 25 C -0.092 4.092 26 S 0.344 5.656 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.160 0.840 34 H 0.106 0.894 35 H 0.055 0.945 36 H 0.193 0.807 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.145 0.855 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.036 8.522 23.484 25.003 hybrid contribution 0.958 -1.263 -0.701 1.733 sum 1.994 7.259 22.782 23.994 Atomic orbital electron populations 1.21470 0.95438 0.98401 1.02957 1.21753 0.97510 0.97950 0.97892 1.19633 0.92937 0.91427 0.88363 0.98009 1.20985 1.32669 1.13365 0.88328 0.90320 1.24892 0.95476 0.96771 0.95705 1.69886 1.45206 1.40413 0.97859 0.86863 0.80810 0.83769 0.76850 1.20302 1.22499 1.19418 1.60649 1.47970 1.16862 1.04494 1.20430 0.94328 0.97803 0.87656 1.26079 1.04075 0.96975 1.03306 1.21506 0.98087 1.00598 0.90710 1.66491 1.23993 1.00754 1.26058 1.25683 0.98999 0.95394 0.97825 1.17833 0.99445 0.90973 0.94455 1.21179 0.98753 0.92240 0.99411 1.20900 0.99185 0.98858 0.94732 1.20080 0.96129 0.95621 0.96004 1.20830 1.02478 0.95999 0.97970 1.21011 1.00477 0.92828 0.99763 1.21272 0.96197 0.99233 0.92520 1.84910 1.43716 1.13142 1.23836 0.92712 0.96031 0.91326 0.95032 0.93968 0.92528 0.84033 0.89375 0.94497 0.80685 0.85654 0.85434 0.90982 0.91363 0.91369 0.85505 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.52 37.16 0.35 -2.25 16 2 C -0.11 -2.44 5.29 -26.73 -0.14 -2.58 16 3 C 0.19 4.21 1.89 -68.86 -0.13 4.08 16 4 H 0.00 0.06 6.77 -51.93 -0.35 -0.29 16 5 C -0.52 -13.86 7.87 -34.44 -0.27 -14.14 16 6 H 0.08 2.31 7.85 -52.49 -0.41 1.90 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 9 Si 0.89 21.65 24.38 -169.99 -4.14 17.51 16 10 H -0.28 -6.62 6.86 56.52 0.39 -6.23 16 11 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 13 N -0.67 -13.07 5.61 -109.22 -0.61 -13.68 16 14 C 0.13 2.11 6.06 -4.98 -0.03 2.08 16 15 C -0.18 -2.74 6.06 -35.89 -0.22 -2.96 16 16 C 0.04 0.63 11.14 -19.36 -0.22 0.41 16 17 N -0.46 -6.87 10.14 -11.36 -0.12 -6.99 16 18 C 0.10 1.32 7.35 -14.29 -0.11 1.22 16 19 C -0.02 -0.28 5.87 -104.98 -0.62 -0.90 16 20 C -0.10 -0.98 9.61 -39.19 -0.38 -1.36 16 21 C -0.12 -1.02 9.68 -39.64 -0.38 -1.40 16 22 C -0.08 -0.63 5.89 -104.54 -0.62 -1.24 16 23 C -0.12 -0.62 10.01 36.01 0.36 -0.26 16 24 C -0.12 -1.07 9.68 -39.64 -0.38 -1.45 16 25 C -0.07 -0.77 9.68 -39.19 -0.38 -1.14 16 26 S 0.09 1.19 22.40 -107.50 -2.41 -1.21 16 27 H 0.05 1.08 7.73 -51.93 -0.40 0.68 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 1.61 7.09 -51.93 -0.37 1.24 16 30 H 0.03 0.60 7.62 -51.93 -0.40 0.21 16 31 H 0.04 0.97 3.26 -51.93 -0.17 0.80 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.34 6.91 8.13 -39.29 -0.32 6.59 16 34 H 0.09 1.36 7.62 -51.93 -0.40 0.96 16 35 H 0.04 0.60 7.94 -51.93 -0.41 0.19 16 36 H 0.18 2.31 8.06 -52.49 -0.42 1.89 16 37 H 0.13 1.18 7.30 -52.49 -0.38 0.79 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.31 8.08 -51.93 -0.42 -0.10 16 41 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.14 1.45 7.82 -52.48 -0.41 1.04 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -29.89 362.11 -10.45 -40.35 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.15 Total: 4.49 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -3.25 Total: -19.93 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.05 Total: -46.66 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.14 Total: 17.51 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.41 Total: -1.21 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.89 -10.45 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184096532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.313 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds