Wall clock time and date at job start Tue Mar 31 2020 11:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46880 * 2 1 4 4 H 1.09000 * 109.47181 * 179.25045 * 3 2 1 5 5 C 1.50704 * 109.47152 * 299.24698 * 3 2 1 6 6 H 1.07995 * 120.00100 * 119.99563 * 5 3 2 7 7 C 1.37878 * 119.99611 * 300.00212 * 5 3 2 8 8 N 1.31524 * 119.99601 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 120.00342 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47388 * 90.00263 * 9 7 5 11 11 H 1.48504 * 109.47389 * 210.00278 * 9 7 5 12 12 H 1.48501 * 109.47089 * 330.00002 * 9 7 5 13 13 N 1.46895 * 109.47309 * 59.24436 * 3 2 1 14 14 C 1.46901 * 111.00275 * 85.93611 * 13 3 2 15 15 C 1.50695 * 109.47564 * 175.54743 * 14 13 3 16 16 C 1.33729 * 125.88951 * 90.00109 * 15 14 13 17 17 N 1.31303 * 115.84583 * 179.97438 * 16 15 14 18 18 C 1.30222 * 117.04470 * 0.02562 * 17 16 15 19 19 C 1.47870 * 125.47674 * 179.97438 * 18 17 16 20 20 C 1.39543 * 120.14373 * 179.75157 * 19 18 17 21 21 C 1.37972 * 119.85208 * 179.69862 * 20 19 18 22 22 C 1.38348 * 120.14196 * 0.59448 * 21 20 19 23 23 C 1.50707 * 119.85500 * 179.69823 * 22 21 20 24 24 C 1.38351 * 120.29025 * 359.68163 * 22 21 20 25 25 C 1.37963 * 120.14117 * 0.02562 * 24 22 21 26 26 S 1.76182 * 109.05327 * 359.73173 * 18 17 16 27 27 H 1.08998 * 109.47388 * 295.55998 * 1 2 3 28 28 H 1.09004 * 109.46681 * 175.56217 * 1 2 3 29 29 H 1.08994 * 109.47363 * 55.55970 * 1 2 3 30 30 H 1.08998 * 109.47139 * 119.99726 * 2 1 3 31 31 H 1.08996 * 109.46971 * 240.00302 * 2 1 3 32 32 H 0.96993 * 119.99568 * 179.97438 * 8 7 5 33 33 H 1.00901 * 111.00549 * 209.89266 * 13 3 2 34 34 H 1.08998 * 109.46976 * 295.55496 * 14 13 3 35 35 H 1.09004 * 109.46501 * 55.54866 * 14 13 3 36 36 H 1.07999 * 122.07663 * 359.97438 * 16 15 14 37 37 H 1.07996 * 120.07679 * 359.97038 * 20 19 18 38 38 H 1.08000 * 119.92805 * 180.29107 * 21 20 19 39 39 H 1.08997 * 109.47291 * 269.97810 * 23 22 21 40 40 H 1.08999 * 109.46995 * 29.98088 * 23 22 21 41 41 H 1.09004 * 109.46613 * 149.98083 * 23 22 21 42 42 H 1.07999 * 119.93175 * 179.97438 * 24 22 21 43 43 H 1.08005 * 120.07367 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0134 5 6 1.5529 2.1475 -1.2397 6 1 0.9308 3.0259 -1.1522 7 6 1.9015 1.6709 -2.4857 8 7 1.4760 2.2859 -3.5676 9 14 2.9780 0.1519 -2.6371 10 1 2.1206 -1.0595 -2.6876 11 1 3.7853 0.2391 -3.8805 12 1 3.8842 0.0684 -1.4635 13 7 1.5355 2.1403 1.1901 14 6 2.4168 1.9177 2.3441 15 6 1.9295 2.7340 3.5134 16 6 1.0519 2.3317 4.4388 17 7 0.7661 3.2066 5.3752 18 6 1.3602 4.3633 5.3061 19 6 1.1766 5.4806 6.2571 20 6 1.8764 6.6747 6.0789 21 6 1.6957 7.7156 6.9663 22 6 0.8325 7.5729 8.0380 23 6 0.6452 8.7117 9.0072 24 6 0.1400 6.3896 8.2235 25 6 0.3071 5.3433 7.3400 26 16 2.4234 4.3808 3.9013 27 1 -0.3634 0.4434 0.9271 28 1 -0.3633 -1.0246 -0.0795 29 1 -0.3634 0.5812 -0.8475 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.7215 1.9509 -4.4441 33 1 1.4187 3.1261 1.0092 34 1 2.4075 0.8606 2.6098 35 1 3.4327 2.2192 2.0888 36 1 0.6060 1.3483 4.4173 37 1 2.5545 6.7854 5.2457 38 1 2.2332 8.6419 6.8269 39 1 1.3719 8.6245 9.8150 40 1 0.7912 9.6587 8.4877 41 1 -0.3630 8.6753 9.4200 42 1 -0.5321 6.2844 9.0623 43 1 -0.2343 4.4202 7.4856 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184096532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:12 Heat of formation + Delta-G solvation = 46.529878 kcal Electronic energy + Delta-G solvation = -22561.538507 eV Core-core repulsion = 19311.274912 eV Total energy + Delta-G solvation = -3250.263595 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.84760 -39.91191 -38.40489 -35.13807 -34.22376 -33.38075 -31.98827 -31.08603 -29.15756 -28.04850 -25.96662 -24.97555 -24.53194 -23.62785 -22.44217 -21.22959 -20.39987 -19.13758 -18.48996 -17.66495 -17.07218 -16.24615 -16.04778 -15.95009 -15.79353 -15.70492 -15.25044 -15.02390 -14.74275 -14.53499 -14.43817 -14.33122 -14.24725 -13.89607 -13.31842 -13.03142 -12.95484 -12.91242 -12.63380 -12.47270 -12.31520 -12.19164 -12.09613 -11.96311 -11.79035 -11.26159 -10.99557 -10.77835 -10.69200 -10.55629 -10.25837 -9.95307 -9.22885 -9.01644 -8.30631 -6.33610 -0.79514 0.21807 0.42257 0.52701 0.66028 1.30677 1.33864 1.43704 1.85865 2.30272 2.82265 2.97709 3.05233 3.50327 3.83566 3.87325 3.95733 4.04612 4.09902 4.17916 4.32890 4.45152 4.46059 4.47014 4.63199 4.69958 4.78262 4.80627 4.85636 4.90475 4.93465 5.07880 5.12837 5.15752 5.28278 5.34014 5.37109 5.41895 5.47322 5.62179 5.63216 5.76671 5.94228 5.97824 6.41299 6.57925 6.65411 6.76864 7.31412 8.85769 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.028980 B = 0.002481 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.967062 B =11281.730914 C =11696.837746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.115 4.115 3 C 0.190 3.810 4 H -0.001 1.001 5 C -0.510 4.510 6 H 0.038 0.962 7 C 0.018 3.982 8 N -0.946 5.946 9 Si 0.945 3.055 10 H -0.266 1.266 11 H -0.301 1.301 12 H -0.249 1.249 13 N -0.668 5.668 14 C 0.136 3.864 15 C -0.206 4.206 16 C 0.046 3.954 17 N -0.483 5.483 18 C 0.104 3.896 19 C -0.056 4.056 20 C -0.101 4.101 21 C -0.122 4.122 22 C -0.071 4.071 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.080 4.080 26 S 0.094 5.906 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.265 0.735 33 H 0.333 0.667 34 H 0.103 0.897 35 H 0.037 0.963 36 H 0.188 0.812 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.151 0.849 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.741 8.368 26.404 27.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.153 4.153 3 C 0.081 3.919 4 H 0.016 0.984 5 C -0.549 4.549 6 H 0.056 0.944 7 C -0.180 4.180 8 N -0.586 5.586 9 Si 0.772 3.228 10 H -0.192 1.192 11 H -0.229 1.229 12 H -0.173 1.173 13 N -0.299 5.299 14 C 0.005 3.995 15 C -0.327 4.327 16 C -0.106 4.106 17 N -0.196 5.196 18 C -0.170 4.170 19 C -0.060 4.060 20 C -0.122 4.122 21 C -0.140 4.140 22 C -0.072 4.072 23 C -0.172 4.172 24 C -0.143 4.143 25 C -0.102 4.102 26 S 0.351 5.649 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.151 0.849 34 H 0.121 0.879 35 H 0.055 0.945 36 H 0.205 0.795 37 H 0.146 0.854 38 H 0.170 0.830 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.168 0.832 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.665 8.434 26.301 27.671 hybrid contribution 0.685 -1.015 -1.386 1.849 sum 2.349 7.419 24.916 26.103 Atomic orbital electron populations 1.21370 0.95102 0.99332 1.01709 1.21740 0.97825 0.96790 0.98907 1.19468 0.92471 0.92274 0.87718 0.98382 1.21214 1.31130 1.12137 0.90378 0.94351 1.25700 0.97035 0.99912 0.95342 1.70035 1.47447 1.42602 0.98503 0.85906 0.79386 0.80233 0.77238 1.19212 1.22853 1.17302 1.60601 1.48888 1.16084 1.04339 1.20380 0.93585 0.98938 0.86597 1.25892 1.05526 0.97713 1.03550 1.21744 0.97477 1.01073 0.90319 1.66551 1.25068 1.01342 1.26671 1.26141 0.97763 0.95507 0.97610 1.18005 1.01480 0.91272 0.95231 1.21332 0.98635 0.92202 1.00017 1.21242 0.99217 0.99215 0.94290 1.20497 0.94692 0.96111 0.95914 1.20910 1.03514 0.95134 0.97654 1.21306 1.00713 0.92402 0.99870 1.21354 0.96168 0.99834 0.92818 1.84810 1.43715 1.12523 1.23816 0.91936 0.93573 0.94962 0.91754 0.94976 0.92563 0.84929 0.87931 0.94470 0.79476 0.85362 0.82983 0.89754 0.90281 0.90314 0.83172 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.73 9.52 71.98 0.69 -4.04 16 2 C -0.11 -4.69 5.29 30.60 0.16 -4.53 16 3 C 0.19 8.51 1.89 44.17 0.08 8.59 16 4 H 0.00 -0.06 6.77 -2.39 -0.02 -0.08 16 5 C -0.51 -28.16 7.87 25.60 0.20 -27.96 16 6 H 0.04 2.37 7.85 -2.91 -0.02 2.35 16 7 C 0.02 1.02 5.45 84.65 0.46 1.48 16 8 N -0.95 -58.42 13.96 21.45 0.30 -58.13 16 9 Si 0.94 44.41 24.38 68.60 1.67 46.08 16 10 H -0.27 -12.00 6.86 99.48 0.68 -11.31 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 12 H -0.25 -10.81 6.53 99.48 0.65 -10.16 16 13 N -0.67 -25.92 5.61 -499.47 -2.80 -28.72 16 14 C 0.14 4.26 6.06 85.56 0.52 4.78 16 15 C -0.21 -6.05 6.06 24.66 0.15 -5.90 16 16 C 0.05 1.32 11.14 83.75 0.93 2.25 16 17 N -0.48 -14.33 10.14 -189.84 -1.93 -16.26 16 18 C 0.10 2.88 7.35 87.48 0.64 3.52 16 19 C -0.06 -1.33 5.87 -20.09 -0.12 -1.44 16 20 C -0.10 -1.99 9.61 22.52 0.22 -1.77 16 21 C -0.12 -1.82 9.68 22.23 0.22 -1.60 16 22 C -0.07 -0.96 5.89 -19.81 -0.12 -1.08 16 23 C -0.12 -0.84 10.01 71.24 0.71 -0.12 16 24 C -0.13 -1.93 9.68 22.23 0.22 -1.71 16 25 C -0.08 -1.68 9.68 22.52 0.22 -1.46 16 26 S 0.09 2.56 22.40 -56.49 -1.27 1.29 16 27 H 0.06 2.37 7.73 -2.39 -0.02 2.36 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.03 1.50 7.09 -2.39 -0.02 1.48 16 30 H 0.06 2.23 7.62 -2.39 -0.02 2.21 16 31 H 0.03 1.39 3.26 -2.39 -0.01 1.38 16 32 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.33 13.79 8.13 -89.69 -0.73 13.06 16 34 H 0.10 2.90 7.62 -2.39 -0.02 2.89 16 35 H 0.04 1.17 7.94 -2.38 -0.02 1.15 16 36 H 0.19 4.71 8.06 -2.91 -0.02 4.69 16 37 H 0.13 2.33 7.30 -2.91 -0.02 2.31 16 38 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 41 H 0.08 0.44 8.08 -2.38 -0.02 0.42 16 42 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 43 H 0.13 2.77 7.82 -2.91 -0.02 2.74 16 Total: -1.00 -66.01 362.11 1.37 -64.64 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.21 Total: 22.09 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 5.18 Total: -31.00 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -4.43 Total: -103.10 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.67 Total: 46.08 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.27 Total: 1.29 kcal Total: -66.01 1.37 -64.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184096532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.175 kcal (2) G-P(sol) polarization free energy of solvation -66.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds