Wall clock time and date at job start Tue Mar 31 2020 11:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.37676 * 126.52212 * 2 1 4 4 H 0.97007 * 126.50452 * 0.02562 * 3 2 1 5 5 C 1.36108 * 106.99763 * 179.88034 * 3 2 1 6 6 S 1.76199 * 125.80417 * 180.14286 * 5 3 2 7 7 C 1.81004 * 100.00317 * 180.26262 * 6 5 3 8 8 H 1.09005 * 109.46464 * 54.99657 * 7 6 5 9 9 C 1.52995 * 109.46953 * 295.00268 * 7 6 5 10 10 C 1.52993 * 109.47436 * 174.99815 * 7 6 5 11 11 C 1.50696 * 109.47308 * 295.00546 * 10 7 6 12 12 H 1.07994 * 120.00061 * 359.97438 * 11 10 7 13 13 C 1.37875 * 120.00135 * 180.02562 * 11 10 7 14 14 N 1.31518 * 120.00261 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00289 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47115 * 59.99503 * 15 13 11 17 17 H 1.48496 * 109.47622 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47273 * 299.99748 * 15 13 11 19 19 N 1.31262 * 108.39452 * 0.38902 * 5 3 2 20 20 C 1.34360 * 109.30705 * 359.75720 * 19 5 3 21 21 C 1.50706 * 125.82997 * 180.02562 * 20 19 5 22 22 C 1.50700 * 109.46764 * 269.99665 * 21 20 19 23 23 C 1.38241 * 119.99882 * 269.72845 * 22 21 20 24 24 C 1.38231 * 119.99562 * 179.76764 * 23 22 21 25 25 C 1.38237 * 120.00167 * 0.50621 * 24 23 22 26 26 C 1.38230 * 120.00070 * 359.74615 * 25 24 23 27 27 C 1.38234 * 120.00111 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47152 * 269.68521 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68621 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68602 * 1 2 3 31 31 H 1.09002 * 109.47221 * 179.97438 * 9 7 6 32 32 H 1.08998 * 109.47363 * 299.99205 * 9 7 6 33 33 H 1.08999 * 109.47490 * 59.99754 * 9 7 6 34 34 H 1.09007 * 109.47039 * 55.00490 * 10 7 6 35 35 H 1.08996 * 109.47466 * 175.00273 * 10 7 6 36 36 H 0.96994 * 120.00094 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.47097 * 29.99404 * 21 20 19 38 38 H 1.09000 * 109.46862 * 150.00182 * 21 20 19 39 39 H 1.07996 * 120.00297 * 359.97438 * 23 22 21 40 40 H 1.07998 * 120.00028 * 180.22858 * 24 23 22 41 41 H 1.08009 * 119.99930 * 179.72473 * 25 24 23 42 42 H 1.08001 * 120.00200 * 179.97438 * 26 25 24 43 43 H 1.07996 * 120.00079 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3264 1.1064 0.0000 4 1 2.0432 2.0342 0.0003 5 6 3.6092 0.6515 0.0027 6 16 5.0583 1.6539 0.0075 7 6 6.3309 0.3667 0.0011 8 1 6.1670 -0.3019 -0.8440 9 6 6.2560 -0.4309 1.3045 10 6 7.7113 1.0149 -0.1217 11 6 7.8284 1.6980 -1.4598 12 1 7.0011 1.6721 -2.1535 13 6 8.9920 2.3552 -1.7989 14 7 9.9997 2.3865 -0.9543 15 14 9.1374 3.2014 -3.4579 16 1 8.0883 4.2460 -3.5744 17 1 10.4772 3.8306 -3.5770 18 1 8.9620 2.2008 -4.5410 19 7 3.5833 -0.6608 -0.0042 20 6 2.3068 -1.0800 -0.0060 21 6 1.8498 -2.5161 -0.0128 22 6 1.6972 -2.9878 -1.4359 23 6 0.4848 -2.8462 -2.0848 24 6 0.3462 -3.2746 -3.3917 25 6 1.4170 -3.8540 -4.0464 26 6 2.6279 -4.0003 -3.3959 27 6 2.7679 -3.5677 -2.0904 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 7.0221 -1.2063 1.3005 32 1 6.4199 0.2377 2.1496 33 1 5.2726 -0.8927 1.3919 34 1 7.8399 1.7492 0.6736 35 1 8.4815 0.2484 -0.0364 36 1 10.8181 2.8491 -1.1927 37 1 2.5878 -3.1346 0.4978 38 1 0.8916 -2.5948 0.5008 39 1 -0.3532 -2.3980 -1.5717 40 1 -0.5999 -3.1606 -3.8999 41 1 1.3075 -4.1927 -5.0661 42 1 3.4644 -4.4533 -3.9072 43 1 3.7138 -3.6823 -1.5821 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188200104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:12 Heat of formation + Delta-G solvation = 55.993383 kcal Electronic energy + Delta-G solvation = -23265.782823 eV Core-core repulsion = 20015.929597 eV Total energy + Delta-G solvation = -3249.853226 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69059 -39.16543 -34.56219 -33.97284 -32.68623 -31.90700 -30.96685 -30.74344 -27.81238 -27.32411 -25.38758 -23.25088 -22.61058 -21.77774 -21.60850 -20.50408 -19.35120 -17.88001 -16.79636 -16.32768 -15.75949 -15.45850 -15.06302 -14.93763 -14.59728 -14.43772 -13.78456 -13.57325 -13.29098 -13.16033 -12.98852 -12.89885 -12.57649 -12.43860 -12.18730 -12.02884 -11.74371 -11.50856 -11.22051 -11.08861 -10.94777 -10.76293 -10.56729 -10.51675 -9.75827 -9.70520 -9.44386 -9.40000 -9.15555 -8.92009 -8.78899 -8.61000 -8.37375 -6.77203 -6.02474 -4.04470 1.33248 1.40482 1.87192 2.09670 2.97656 3.18136 3.34897 3.38513 3.42225 3.50516 3.80598 4.45972 4.74413 4.86708 4.88805 4.93257 4.98491 5.09822 5.14838 5.28688 5.34730 5.38765 5.49204 5.56711 5.71910 5.74932 5.85354 5.88892 5.97870 5.99835 6.07629 6.24533 6.29988 6.44119 6.51431 6.64783 6.65380 6.70210 6.74815 6.95514 7.03499 7.38702 7.53839 7.59958 7.94949 8.17134 8.32283 9.00552 9.59666 11.08629 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.003566 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.389344 B = 7850.386247 C = 8745.886528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.029 4.029 3 N -0.560 5.560 4 H 0.418 0.582 5 C 0.208 3.792 6 S -0.014 6.014 7 C -0.044 4.044 8 H 0.089 0.911 9 C -0.146 4.146 10 C 0.036 3.964 11 C -0.521 4.521 12 H 0.062 0.938 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.276 1.276 19 N -0.479 5.479 20 C 0.018 3.982 21 C 0.005 3.995 22 C -0.069 4.069 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.103 4.103 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.039 0.961 36 H 0.262 0.738 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.264 -9.258 1.045 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 N -0.167 5.167 4 H 0.256 0.744 5 C -0.163 4.163 6 S 0.217 5.783 7 C -0.173 4.173 8 H 0.107 0.893 9 C -0.205 4.205 10 C -0.002 4.002 11 C -0.560 4.560 12 H 0.081 0.919 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.719 3.281 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.202 1.202 19 N -0.202 5.202 20 C -0.113 4.113 21 C -0.033 4.033 22 C -0.070 4.070 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.146 4.146 26 C -0.137 4.137 27 C -0.121 4.121 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.248 -8.549 1.068 22.005 hybrid contribution -0.697 0.295 -1.080 1.319 sum -20.945 -8.254 -0.012 22.513 Atomic orbital electron populations 1.20247 0.87611 1.03112 1.02356 1.20913 0.93769 0.86624 1.13343 1.43242 1.05597 1.08933 1.58935 0.74417 1.25841 0.90022 0.93937 1.06523 1.85988 0.90370 1.09957 1.92018 1.23495 0.96980 0.96112 1.00740 0.89303 1.22121 1.02511 0.99727 0.96166 1.19095 0.87131 0.96091 0.97929 1.21235 0.99984 1.33428 1.01335 0.91937 1.24976 0.95754 0.96310 0.97053 1.69945 1.04600 1.43254 1.35591 0.86658 0.77109 0.79911 0.84408 1.20112 1.21322 1.20180 1.70691 1.20864 1.07084 1.21607 1.20120 0.89220 0.94172 1.07795 1.18798 1.01494 0.90164 0.92836 1.19792 0.93594 0.97514 0.96064 1.21030 0.97142 1.00528 0.95028 1.21071 0.98729 0.99428 0.94948 1.21112 0.93504 1.00235 0.99748 1.21173 0.97486 1.00029 0.94977 1.21138 0.98505 0.97670 0.94823 0.91190 0.90193 0.91872 0.92393 0.92944 0.91371 0.95616 0.94324 0.92860 0.89642 0.90101 0.86326 0.86433 0.86459 0.86163 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.03 36.01 0.36 -0.28 16 2 C -0.03 -0.38 7.25 -81.32 -0.59 -0.97 16 3 N -0.56 -7.95 6.24 -8.98 -0.06 -8.00 16 4 H 0.42 4.76 8.96 -40.82 -0.37 4.39 16 5 C 0.21 3.67 7.96 -88.76 -0.71 2.96 16 6 S -0.01 -0.28 21.07 -107.50 -2.26 -2.55 16 7 C -0.04 -0.94 2.27 -26.74 -0.06 -1.00 16 8 H 0.09 2.00 8.14 -51.91 -0.42 1.58 16 9 C -0.15 -2.72 9.01 37.15 0.33 -2.38 16 10 C 0.04 0.92 4.44 -27.89 -0.12 0.79 16 11 C -0.52 -14.45 8.53 -34.44 -0.29 -14.75 16 12 H 0.06 1.72 7.60 -52.49 -0.40 1.32 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 15 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 N -0.48 -8.54 8.71 -9.68 -0.08 -8.62 16 20 C 0.02 0.26 6.31 -82.84 -0.52 -0.26 16 21 C 0.01 0.06 5.50 -29.03 -0.16 -0.10 16 22 C -0.07 -0.84 5.12 -104.62 -0.54 -1.37 16 23 C -0.12 -1.27 9.50 -39.58 -0.38 -1.64 16 24 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 25 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 26 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 27 C -0.10 -1.33 9.70 -39.58 -0.38 -1.72 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.60 5.53 -51.93 -0.29 0.31 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.24 5.88 -51.93 -0.31 0.94 16 34 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 38 H 0.08 0.74 7.70 -51.93 -0.40 0.34 16 39 H 0.12 0.98 6.08 -52.49 -0.32 0.66 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 43 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -31.84 368.74 -11.76 -43.60 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.28 Total: 3.39 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -4.35 Total: -24.33 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.60 Total: -42.37 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.26 Total: -2.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.84 -11.76 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188200104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.595 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds