Wall clock time and date at job start Tue Mar 31 2020 11:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.37676 * 126.52212 * 2 1 4 4 H 0.97007 * 126.50452 * 0.02562 * 3 2 1 5 5 C 1.36108 * 106.99763 * 179.88034 * 3 2 1 6 6 S 1.76199 * 125.80417 * 180.14286 * 5 3 2 7 7 C 1.81004 * 100.00317 * 180.26262 * 6 5 3 8 8 H 1.09005 * 109.46464 * 54.99657 * 7 6 5 9 9 C 1.52995 * 109.46953 * 295.00268 * 7 6 5 10 10 C 1.52993 * 109.47436 * 174.99815 * 7 6 5 11 11 C 1.50696 * 109.47308 * 295.00546 * 10 7 6 12 12 H 1.07994 * 120.00061 * 359.97438 * 11 10 7 13 13 C 1.37875 * 120.00135 * 180.02562 * 11 10 7 14 14 N 1.31518 * 120.00261 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00289 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47115 * 59.99503 * 15 13 11 17 17 H 1.48496 * 109.47622 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47273 * 299.99748 * 15 13 11 19 19 N 1.31262 * 108.39452 * 0.38902 * 5 3 2 20 20 C 1.34360 * 109.30705 * 359.75720 * 19 5 3 21 21 C 1.50706 * 125.82997 * 180.02562 * 20 19 5 22 22 C 1.50700 * 109.46764 * 269.99665 * 21 20 19 23 23 C 1.38241 * 119.99882 * 269.72845 * 22 21 20 24 24 C 1.38231 * 119.99562 * 179.76764 * 23 22 21 25 25 C 1.38237 * 120.00167 * 0.50621 * 24 23 22 26 26 C 1.38230 * 120.00070 * 359.74615 * 25 24 23 27 27 C 1.38234 * 120.00111 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47152 * 269.68521 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68621 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68602 * 1 2 3 31 31 H 1.09002 * 109.47221 * 179.97438 * 9 7 6 32 32 H 1.08998 * 109.47363 * 299.99205 * 9 7 6 33 33 H 1.08999 * 109.47490 * 59.99754 * 9 7 6 34 34 H 1.09007 * 109.47039 * 55.00490 * 10 7 6 35 35 H 1.08996 * 109.47466 * 175.00273 * 10 7 6 36 36 H 0.96994 * 120.00094 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.47097 * 29.99404 * 21 20 19 38 38 H 1.09000 * 109.46862 * 150.00182 * 21 20 19 39 39 H 1.07996 * 120.00297 * 359.97438 * 23 22 21 40 40 H 1.07998 * 120.00028 * 180.22858 * 24 23 22 41 41 H 1.08009 * 119.99930 * 179.72473 * 25 24 23 42 42 H 1.08001 * 120.00200 * 179.97438 * 26 25 24 43 43 H 1.07996 * 120.00079 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3264 1.1064 0.0000 4 1 2.0432 2.0342 0.0003 5 6 3.6092 0.6515 0.0027 6 16 5.0583 1.6539 0.0075 7 6 6.3309 0.3667 0.0011 8 1 6.1670 -0.3019 -0.8440 9 6 6.2560 -0.4309 1.3045 10 6 7.7113 1.0149 -0.1217 11 6 7.8284 1.6980 -1.4598 12 1 7.0011 1.6721 -2.1535 13 6 8.9920 2.3552 -1.7989 14 7 9.9997 2.3865 -0.9543 15 14 9.1374 3.2014 -3.4579 16 1 8.0883 4.2460 -3.5744 17 1 10.4772 3.8306 -3.5770 18 1 8.9620 2.2008 -4.5410 19 7 3.5833 -0.6608 -0.0042 20 6 2.3068 -1.0800 -0.0060 21 6 1.8498 -2.5161 -0.0128 22 6 1.6972 -2.9878 -1.4359 23 6 0.4848 -2.8462 -2.0848 24 6 0.3462 -3.2746 -3.3917 25 6 1.4170 -3.8540 -4.0464 26 6 2.6279 -4.0003 -3.3959 27 6 2.7679 -3.5677 -2.0904 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 7.0221 -1.2063 1.3005 32 1 6.4199 0.2377 2.1496 33 1 5.2726 -0.8927 1.3919 34 1 7.8399 1.7492 0.6736 35 1 8.4815 0.2484 -0.0364 36 1 10.8181 2.8491 -1.1927 37 1 2.5878 -3.1346 0.4978 38 1 0.8916 -2.5948 0.5008 39 1 -0.3532 -2.3980 -1.5717 40 1 -0.5999 -3.1606 -3.8999 41 1 1.3075 -4.1927 -5.0661 42 1 3.4644 -4.4533 -3.9072 43 1 3.7138 -3.6823 -1.5821 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188200104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:11 Heat of formation + Delta-G solvation = 40.413843 kcal Electronic energy + Delta-G solvation = -23266.458403 eV Core-core repulsion = 20015.929597 eV Total energy + Delta-G solvation = -3250.528806 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.84451 -40.00246 -36.47583 -34.91756 -34.21978 -33.51915 -31.85194 -31.61826 -29.46527 -28.51301 -26.41417 -25.24950 -23.46749 -23.00699 -22.53628 -22.18228 -20.43770 -19.12120 -18.50602 -17.62589 -17.11253 -16.57702 -16.47126 -16.25645 -15.86095 -15.72660 -14.86712 -14.74422 -14.43940 -14.21943 -14.17624 -13.99870 -13.66646 -13.65261 -13.35071 -13.28908 -13.02996 -12.97164 -12.85061 -12.60877 -12.42600 -12.34978 -12.03030 -11.75667 -11.53257 -11.30681 -11.08267 -10.89864 -10.80063 -10.54870 -9.95924 -9.76439 -9.55309 -8.20631 -8.17414 -6.29583 0.44229 0.48390 0.55679 0.95940 1.39488 1.39964 1.42412 1.49885 2.00007 2.39989 2.41062 2.94459 3.14180 3.82531 4.03533 4.05059 4.10149 4.13128 4.16220 4.24987 4.27957 4.32449 4.48605 4.57465 4.65864 4.68544 4.80690 4.89195 4.92512 4.93263 5.05035 5.10177 5.15803 5.23136 5.24627 5.32268 5.38378 5.50334 5.62216 5.67533 5.75182 5.77754 5.79182 6.17476 6.19113 6.34390 6.81931 6.99678 7.38375 8.91076 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.003566 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.389344 B = 7850.386247 C = 8745.886528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.005 4.005 3 N -0.549 5.549 4 H 0.430 0.570 5 C 0.178 3.822 6 S -0.030 6.030 7 C -0.036 4.036 8 H 0.070 0.930 9 C -0.134 4.134 10 C 0.045 3.955 11 C -0.534 4.534 12 H 0.060 0.940 13 C 0.008 3.992 14 N -0.930 5.930 15 Si 0.956 3.044 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.270 1.270 19 N -0.502 5.502 20 C -0.010 4.010 21 C 0.011 3.989 22 C -0.081 4.081 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.136 4.136 27 C -0.131 4.131 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.005 0.995 35 H 0.016 0.984 36 H 0.264 0.736 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.125 0.875 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.960 -9.116 0.149 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 N -0.157 5.157 4 H 0.271 0.729 5 C -0.194 4.194 6 S 0.201 5.799 7 C -0.165 4.165 8 H 0.089 0.911 9 C -0.193 4.193 10 C 0.007 3.993 11 C -0.572 4.572 12 H 0.078 0.922 13 C -0.190 4.190 14 N -0.570 5.570 15 Si 0.781 3.219 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.195 1.195 19 N -0.226 5.226 20 C -0.141 4.141 21 C -0.028 4.028 22 C -0.082 4.082 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.149 4.149 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.023 0.977 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -23.951 -8.400 0.174 25.382 hybrid contribution 0.294 0.172 -0.800 0.869 sum -23.657 -8.228 -0.626 25.055 Atomic orbital electron populations 1.20479 0.83769 1.04775 1.04289 1.21711 0.95764 0.85355 1.09484 1.43265 1.04572 1.10121 1.57789 0.72927 1.25191 0.90262 0.93865 1.10074 1.85703 0.91404 1.09737 1.93083 1.23136 0.95738 0.96250 1.01378 0.91122 1.22005 1.02978 0.99479 0.94805 1.18870 0.89138 0.94877 0.96443 1.21520 1.00016 1.33554 1.02113 0.92190 1.25820 0.95388 0.97004 1.00778 1.70063 1.05155 1.44206 1.37547 0.85627 0.77426 0.78969 0.79862 1.19242 1.20621 1.19535 1.70589 1.23256 1.07408 1.21297 1.20658 0.88360 0.96083 1.08983 1.18854 1.02611 0.88274 0.93019 1.19912 0.94080 0.97840 0.96325 1.21363 0.97144 0.99948 0.95291 1.21483 0.99635 0.98246 0.94963 1.21436 0.93136 0.99956 1.00763 1.21362 0.98605 1.00538 0.94851 1.21205 0.98548 0.99463 0.95706 0.88984 0.88506 0.90203 0.91982 0.92558 0.90748 0.97681 0.96631 0.92680 0.90811 0.86925 0.83443 0.83536 0.84425 0.85697 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.03 71.24 0.71 -0.20 16 2 C 0.00 -0.11 7.25 40.76 0.30 0.18 16 3 N -0.55 -14.61 6.24 -182.33 -1.14 -15.75 16 4 H 0.43 8.92 8.96 -92.70 -0.83 8.09 16 5 C 0.18 6.23 7.96 179.70 1.43 7.66 16 6 S -0.03 -1.21 21.07 -56.49 -1.19 -2.40 16 7 C -0.04 -1.58 2.27 30.59 0.07 -1.51 16 8 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 9 C -0.13 -5.14 9.01 71.98 0.65 -4.49 16 10 C 0.05 2.41 4.44 29.84 0.13 2.54 16 11 C -0.53 -30.49 8.53 25.60 0.22 -30.27 16 12 H 0.06 3.39 7.60 -2.91 -0.02 3.37 16 13 C 0.01 0.48 5.46 84.65 0.46 0.95 16 14 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 15 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 N -0.50 -17.91 8.71 -184.52 -1.61 -19.51 16 20 C -0.01 -0.29 6.31 41.29 0.26 -0.03 16 21 C 0.01 0.23 5.50 29.10 0.16 0.39 16 22 C -0.08 -1.86 5.12 -19.86 -0.10 -1.96 16 23 C -0.12 -2.15 9.50 22.27 0.21 -1.94 16 24 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 25 C -0.14 -2.64 10.05 22.27 0.22 -2.42 16 26 C -0.14 -3.19 10.05 22.27 0.22 -2.97 16 27 C -0.13 -3.46 9.70 22.27 0.22 -3.24 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 0.90 5.53 -2.39 -0.01 0.89 16 30 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.07 2.78 5.88 -2.39 -0.01 2.76 16 34 H 0.00 0.28 8.14 -2.38 -0.02 0.26 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.07 1.76 8.09 -2.39 -0.02 1.74 16 38 H 0.11 1.68 7.70 -2.39 -0.02 1.66 16 39 H 0.15 1.70 6.08 -2.91 -0.02 1.68 16 40 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 43 H 0.11 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -71.04 368.74 3.95 -67.09 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.18 Total: 18.93 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 5.39 Total: -39.27 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -2.46 Total: -91.33 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -1.19 Total: -2.40 kcal Total: -71.04 3.95 -67.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188200104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.503 kcal (2) G-P(sol) polarization free energy of solvation -71.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds