Wall clock time and date at job start Tue Mar 31 2020 11:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35242 * 126.06710 * 2 1 4 4 C 1.40432 * 107.86029 * 179.84798 * 3 2 1 5 5 N 1.39992 * 125.97845 * 180.16146 * 4 3 2 6 6 S 1.65596 * 120.00296 * 180.32206 * 5 4 3 7 7 O 1.42094 * 106.40509 * 178.54304 * 6 5 4 8 8 O 1.42098 * 106.40329 * 311.46584 * 6 5 4 9 9 N 1.65601 * 107.21371 * 65.00363 * 6 5 4 10 10 C 1.46504 * 119.99895 * 90.00250 * 9 6 5 11 11 C 1.46499 * 120.00040 * 269.99656 * 9 6 5 12 12 C 1.53001 * 109.47186 * 120.00265 * 11 9 6 13 13 C 1.53000 * 109.47308 * 240.00027 * 11 9 6 14 14 N 1.31220 * 108.04675 * 0.42021 * 4 3 2 15 15 N 1.34960 * 126.06853 * 180.31060 * 2 1 3 16 16 C 1.46508 * 125.97122 * 359.96266 * 15 2 1 17 17 C 1.50698 * 109.46766 * 90.00244 * 16 15 2 18 18 H 1.08000 * 120.00464 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99624 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00517 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99885 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47284 * 89.99606 * 21 19 17 23 23 H 1.48499 * 109.47261 * 209.99517 * 21 19 17 24 24 H 1.48500 * 109.47477 * 329.99459 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.69014 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69114 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69095 * 1 2 3 28 28 H 1.07997 * 126.07273 * 359.97438 * 3 2 1 29 29 H 0.97008 * 119.99647 * 0.33060 * 5 4 3 30 30 H 1.09004 * 109.47147 * 89.99859 * 10 9 6 31 31 H 1.09003 * 109.46870 * 209.99767 * 10 9 6 32 32 H 1.08996 * 109.47158 * 329.99645 * 10 9 6 33 33 H 1.08997 * 109.47131 * 0.02562 * 11 9 6 34 34 H 1.09008 * 109.47229 * 59.99959 * 12 11 9 35 35 H 1.08992 * 109.47438 * 179.97438 * 12 11 9 36 36 H 1.09004 * 109.46948 * 300.00508 * 12 11 9 37 37 H 1.09002 * 109.46926 * 179.97438 * 13 11 9 38 38 H 1.08997 * 109.47528 * 300.00373 * 13 11 9 39 39 H 1.08999 * 109.46882 * 60.00524 * 13 11 9 40 40 H 1.08996 * 109.46980 * 210.00193 * 16 15 2 41 41 H 1.08996 * 109.47109 * 330.00438 * 16 15 2 42 42 H 0.96998 * 120.00630 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6373 0.6544 0.0035 5 7 4.7725 1.4736 0.0079 6 16 6.2831 0.7953 0.0036 7 8 7.2074 1.8742 -0.0251 8 8 6.2797 -0.1983 1.0195 9 7 6.4560 -0.0071 -1.4346 10 6 7.0034 0.6900 -2.6011 11 6 6.0616 -1.4140 -1.5406 12 6 4.9708 -1.5593 -2.6035 13 6 7.2761 -2.2556 -1.9379 14 7 3.6336 -0.6577 -0.0036 15 7 2.3016 -1.0909 -0.0059 16 6 1.8498 -2.4846 -0.0127 17 6 1.6943 -2.9552 -1.4358 18 1 1.9099 -2.2833 -2.2535 19 6 1.2757 -4.2432 -1.6940 20 7 1.0126 -5.0613 -0.6985 21 14 1.0821 -4.8264 -3.4581 22 1 2.3626 -5.4131 -3.9288 23 1 0.0125 -5.8544 -3.5251 24 1 0.7174 -3.6756 -4.3228 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5090 28 1 1.9720 2.1211 -0.0004 29 1 4.6741 2.4387 0.0135 30 1 8.0874 0.5765 -2.6166 31 1 6.5804 0.2637 -3.5108 32 1 6.7498 1.7485 -2.5439 33 1 5.6798 -1.7577 -0.5792 34 1 5.3522 -1.2155 -3.5650 35 1 4.6777 -2.6061 -2.6826 36 1 4.1056 -0.9597 -2.3205 37 1 6.9827 -3.3025 -2.0162 38 1 7.6576 -1.9118 -2.8993 39 1 8.0532 -2.1522 -1.1806 40 1 2.5847 -3.1071 0.4976 41 1 0.8915 -2.5583 0.5012 42 1 0.7184 -5.9676 -0.8801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271066749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:09 Heat of formation + Delta-G solvation = -3.022327 kcal Electronic energy + Delta-G solvation = -26344.989893 eV Core-core repulsion = 22681.728291 eV Total energy + Delta-G solvation = -3663.261603 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.62526 -37.30188 -37.04580 -35.67701 -35.28929 -33.34199 -31.47648 -31.32650 -30.78940 -26.83954 -26.77399 -26.42433 -26.22775 -23.14830 -20.99097 -20.60180 -19.95074 -18.41903 -17.63282 -17.33092 -16.73433 -16.45990 -15.61272 -15.19201 -14.70648 -14.38557 -14.26048 -14.12049 -13.81420 -13.22360 -12.82838 -12.73440 -12.65654 -12.56210 -12.43981 -12.36400 -12.09627 -11.89809 -11.82987 -11.69879 -11.59137 -11.49200 -11.26410 -11.08586 -10.91214 -10.88873 -10.81974 -10.39604 -10.28859 -9.83358 -9.66148 -8.95054 -8.69789 -8.13788 -7.65469 -6.30880 -4.38564 0.68174 2.61677 2.76562 3.16026 3.23573 3.24912 3.28860 3.45098 3.79968 4.23896 4.51520 4.86344 4.99969 5.08227 5.25676 5.31244 5.41677 5.59118 5.61658 5.70327 5.75293 5.85314 5.95699 5.99729 6.02628 6.09523 6.13250 6.23732 6.25683 6.37149 6.52106 6.70110 6.73268 6.83652 6.90426 6.98282 7.15343 7.38398 7.60665 7.82316 7.92557 8.45306 8.68018 9.27783 10.76591 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.014383 B = 0.005646 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.233429 B = 4958.112630 C = 6161.219065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.108 3.892 3 C -0.311 4.311 4 C 0.285 3.715 5 N -1.027 6.027 6 S 2.785 3.215 7 O -0.984 6.984 8 O -0.952 6.952 9 N -0.994 5.994 10 C 0.095 3.905 11 C 0.143 3.857 12 C -0.151 4.151 13 C -0.156 4.156 14 N -0.314 5.314 15 N -0.311 5.311 16 C 0.257 3.743 17 C -0.534 4.534 18 H 0.066 0.934 19 C 0.068 3.932 20 N -0.889 5.889 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.137 0.863 29 H 0.426 0.574 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.955 10.805 -2.907 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.025 4.025 3 C -0.344 4.344 4 C 0.029 3.971 5 N -0.780 5.780 6 S 2.793 3.207 7 O -0.968 6.968 8 O -0.934 6.934 9 N -0.836 5.836 10 C -0.051 4.051 11 C 0.038 3.962 12 C -0.210 4.210 13 C -0.215 4.215 14 N -0.145 5.145 15 N -0.092 5.092 16 C 0.139 3.861 17 C -0.573 4.573 18 H 0.085 0.915 19 C -0.136 4.136 20 N -0.527 5.527 21 Si 0.729 3.271 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.155 0.845 29 H 0.261 0.739 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.293 9.296 -2.157 11.431 hybrid contribution -0.934 0.812 -1.309 1.802 sum 5.359 10.109 -3.466 11.955 Atomic orbital electron populations 1.20416 0.87798 1.04017 1.02726 1.20906 0.94807 0.87046 0.99708 1.20556 0.90000 0.98821 1.25029 1.18542 0.86834 0.89882 1.01822 1.53118 1.20957 1.16272 1.87700 1.02053 0.72263 0.72855 0.73562 1.93605 1.59898 1.55864 1.87387 1.93649 1.85671 1.59508 1.54622 1.57759 1.76992 1.20894 1.27923 1.21372 0.98528 0.96016 0.89164 1.21048 0.94365 0.77981 1.02837 1.22070 0.98486 1.03501 0.96901 1.22117 0.98004 1.00269 1.01153 1.77330 1.00126 1.07441 1.29568 1.49009 1.00634 1.07847 1.51702 1.19754 0.96104 0.71103 0.99097 1.21265 1.46946 0.97901 0.91141 0.91547 1.24898 0.94745 0.96130 0.97843 1.69912 1.44675 1.06990 1.31097 0.86428 0.78095 0.78622 0.83962 1.20301 1.20976 1.19706 0.90902 0.89675 0.90630 0.84511 0.73859 0.92647 0.90777 0.91692 0.86409 0.93882 0.90938 0.91401 0.91289 0.92741 0.92738 0.92713 0.92807 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 9.89 36.01 0.36 -0.97 16 2 C 0.11 1.97 6.92 -82.28 -0.57 1.40 16 3 C -0.31 -5.24 10.74 -39.82 -0.43 -5.67 16 4 C 0.28 5.19 7.76 -154.55 -1.20 3.99 16 5 N -1.03 -15.52 5.97 31.39 0.19 -15.33 16 6 S 2.78 45.87 5.84 -107.50 -0.63 45.25 16 7 O -0.98 -16.65 17.21 -57.17 -0.98 -17.63 16 8 O -0.95 -19.23 15.92 -57.17 -0.91 -20.14 16 9 N -0.99 -14.83 3.13 -114.61 -0.36 -15.19 16 10 C 0.10 1.10 9.35 59.85 0.56 1.66 16 11 C 0.14 2.33 2.47 -67.93 -0.17 2.16 16 12 C -0.15 -2.54 8.90 37.16 0.33 -2.21 16 13 C -0.16 -2.16 9.19 37.16 0.34 -1.82 16 14 N -0.31 -6.58 7.91 31.41 0.25 -6.33 16 15 N -0.31 -6.62 3.59 -58.33 -0.21 -6.83 16 16 C 0.26 6.07 5.81 -5.19 -0.03 6.04 16 17 C -0.53 -13.33 9.39 -34.44 -0.32 -13.65 16 18 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -23.75 13.29 55.43 0.74 -23.02 16 21 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.08 1.37 7.71 -51.93 -0.40 0.97 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.43 4.91 8.96 -34.47 -0.31 4.60 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.78 6.43 -51.93 -0.33 0.44 16 32 H 0.06 0.67 7.79 -51.93 -0.40 0.27 16 33 H 0.12 2.29 5.72 -51.93 -0.30 1.99 16 34 H 0.04 0.61 6.66 -51.92 -0.35 0.27 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.29 6.73 -51.93 -0.35 0.94 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.65 7.67 -51.93 -0.40 0.25 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.05 1.27 7.65 -51.93 -0.40 0.87 16 42 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -30.88 356.07 -8.96 -39.84 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.16 Total: 6.61 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -1.23 Total: -7.44 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: 0.60 Total: -66.69 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.89 Total: -37.77 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 45.87 SS G_CDS: -0.63 Total: 45.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.88 -8.96 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271066749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.818 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds