Wall clock time and date at job start Tue Mar 31 2020 11:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35242 * 126.06710 * 2 1 4 4 C 1.40432 * 107.86029 * 179.84798 * 3 2 1 5 5 N 1.39992 * 125.97845 * 180.16146 * 4 3 2 6 6 S 1.65596 * 120.00296 * 180.32206 * 5 4 3 7 7 O 1.42094 * 106.40509 * 178.54304 * 6 5 4 8 8 O 1.42098 * 106.40329 * 311.46584 * 6 5 4 9 9 N 1.65601 * 107.21371 * 65.00363 * 6 5 4 10 10 C 1.46504 * 119.99895 * 90.00250 * 9 6 5 11 11 C 1.46499 * 120.00040 * 269.99656 * 9 6 5 12 12 C 1.53001 * 109.47186 * 120.00265 * 11 9 6 13 13 C 1.53000 * 109.47308 * 240.00027 * 11 9 6 14 14 N 1.31220 * 108.04675 * 0.42021 * 4 3 2 15 15 N 1.34960 * 126.06853 * 180.31060 * 2 1 3 16 16 C 1.46508 * 125.97122 * 359.96266 * 15 2 1 17 17 C 1.50698 * 109.46766 * 90.00244 * 16 15 2 18 18 H 1.08000 * 120.00464 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99624 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00517 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99885 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47284 * 89.99606 * 21 19 17 23 23 H 1.48499 * 109.47261 * 209.99517 * 21 19 17 24 24 H 1.48500 * 109.47477 * 329.99459 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.69014 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69114 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69095 * 1 2 3 28 28 H 1.07997 * 126.07273 * 359.97438 * 3 2 1 29 29 H 0.97008 * 119.99647 * 0.33060 * 5 4 3 30 30 H 1.09004 * 109.47147 * 89.99859 * 10 9 6 31 31 H 1.09003 * 109.46870 * 209.99767 * 10 9 6 32 32 H 1.08996 * 109.47158 * 329.99645 * 10 9 6 33 33 H 1.08997 * 109.47131 * 0.02562 * 11 9 6 34 34 H 1.09008 * 109.47229 * 59.99959 * 12 11 9 35 35 H 1.08992 * 109.47438 * 179.97438 * 12 11 9 36 36 H 1.09004 * 109.46948 * 300.00508 * 12 11 9 37 37 H 1.09002 * 109.46926 * 179.97438 * 13 11 9 38 38 H 1.08997 * 109.47528 * 300.00373 * 13 11 9 39 39 H 1.08999 * 109.46882 * 60.00524 * 13 11 9 40 40 H 1.08996 * 109.46980 * 210.00193 * 16 15 2 41 41 H 1.08996 * 109.47109 * 330.00438 * 16 15 2 42 42 H 0.96998 * 120.00630 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6373 0.6544 0.0035 5 7 4.7725 1.4736 0.0079 6 16 6.2831 0.7953 0.0036 7 8 7.2074 1.8742 -0.0251 8 8 6.2797 -0.1983 1.0195 9 7 6.4560 -0.0071 -1.4346 10 6 7.0034 0.6900 -2.6011 11 6 6.0616 -1.4140 -1.5406 12 6 4.9708 -1.5593 -2.6035 13 6 7.2761 -2.2556 -1.9379 14 7 3.6336 -0.6577 -0.0036 15 7 2.3016 -1.0909 -0.0059 16 6 1.8498 -2.4846 -0.0127 17 6 1.6943 -2.9552 -1.4358 18 1 1.9099 -2.2833 -2.2535 19 6 1.2757 -4.2432 -1.6940 20 7 1.0126 -5.0613 -0.6985 21 14 1.0821 -4.8264 -3.4581 22 1 2.3626 -5.4131 -3.9288 23 1 0.0125 -5.8544 -3.5251 24 1 0.7174 -3.6756 -4.3228 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5090 28 1 1.9720 2.1211 -0.0004 29 1 4.6741 2.4387 0.0135 30 1 8.0874 0.5765 -2.6166 31 1 6.5804 0.2637 -3.5108 32 1 6.7498 1.7485 -2.5439 33 1 5.6798 -1.7577 -0.5792 34 1 5.3522 -1.2155 -3.5650 35 1 4.6777 -2.6061 -2.6826 36 1 4.1056 -0.9597 -2.3205 37 1 6.9827 -3.3025 -2.0162 38 1 7.6576 -1.9118 -2.8993 39 1 8.0532 -2.1522 -1.1806 40 1 2.5847 -3.1071 0.4976 41 1 0.8915 -2.5583 0.5012 42 1 0.7184 -5.9676 -0.8801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271066749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:09 Heat of formation + Delta-G solvation = -23.979976 kcal Electronic energy + Delta-G solvation = -26345.898685 eV Core-core repulsion = 22681.728291 eV Total energy + Delta-G solvation = -3664.170394 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.08536 -38.60113 -38.33643 -37.09357 -36.72943 -35.18505 -32.78697 -32.54642 -32.47302 -28.47053 -28.08936 -27.75835 -27.32035 -24.94599 -22.34696 -21.97179 -21.34557 -19.74483 -18.94314 -18.76443 -18.59469 -17.81125 -17.08149 -16.65641 -16.25913 -15.88983 -15.69682 -15.21671 -15.11382 -14.70484 -14.37966 -14.13836 -13.88237 -13.78614 -13.66015 -13.56138 -13.45180 -13.39333 -13.27212 -13.14236 -13.11691 -12.83591 -12.72984 -12.64526 -12.43848 -12.30029 -12.20522 -12.09588 -11.65803 -11.45366 -11.25226 -10.66989 -10.10705 -9.59857 -9.15555 -8.25603 -6.40749 -0.62445 1.15996 1.39936 1.41163 1.44525 1.53439 1.88585 2.05533 2.37200 2.47385 3.05684 3.20756 3.64846 3.76575 3.94101 4.16997 4.23515 4.41847 4.44212 4.64660 4.67439 4.76471 4.77754 4.82344 4.83169 4.85241 4.92130 4.97728 5.01509 5.02623 5.15207 5.20091 5.31324 5.44362 5.48865 5.62961 5.65511 5.79407 5.89201 6.05870 6.32407 6.71382 6.99473 7.29424 8.81013 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.014383 B = 0.005646 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.233429 B = 4958.112630 C = 6161.219065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.097 3.903 3 C -0.301 4.301 4 C 0.284 3.716 5 N -1.014 6.014 6 S 2.797 3.203 7 O -0.986 6.986 8 O -0.994 6.994 9 N -0.991 5.991 10 C 0.083 3.917 11 C 0.145 3.855 12 C -0.140 4.140 13 C -0.152 4.152 14 N -0.348 5.348 15 N -0.338 5.338 16 C 0.275 3.725 17 C -0.534 4.534 18 H 0.060 0.940 19 C 0.023 3.977 20 N -0.922 5.922 21 Si 0.962 3.038 22 H -0.275 1.275 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.177 0.823 29 H 0.443 0.557 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.018 0.982 41 H 0.049 0.951 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.038 12.828 -4.763 14.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.034 4.034 3 C -0.334 4.334 4 C 0.027 3.973 5 N -0.770 5.770 6 S 2.805 3.195 7 O -0.970 6.970 8 O -0.977 6.977 9 N -0.834 5.834 10 C -0.061 4.061 11 C 0.039 3.961 12 C -0.199 4.199 13 C -0.211 4.211 14 N -0.178 5.178 15 N -0.120 5.120 16 C 0.156 3.844 17 C -0.572 4.572 18 H 0.078 0.922 19 C -0.177 4.177 20 N -0.561 5.561 21 Si 0.787 3.213 22 H -0.201 1.201 23 H -0.205 1.205 24 H -0.189 1.189 25 H 0.108 0.892 26 H 0.083 0.917 27 H 0.128 0.872 28 H 0.194 0.806 29 H 0.282 0.718 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.381 11.382 -4.013 13.652 hybrid contribution -0.914 0.299 -0.707 1.194 sum 5.467 11.681 -4.720 13.733 Atomic orbital electron populations 1.20524 0.85385 1.04624 1.03993 1.21652 0.96511 0.86389 0.98841 1.20979 0.88865 1.00207 1.23335 1.18838 0.88239 0.89552 1.00658 1.52921 1.19719 1.17032 1.87322 1.01510 0.72295 0.72260 0.73421 1.93596 1.60087 1.55780 1.87559 1.93601 1.86307 1.60919 1.56860 1.57596 1.77010 1.20315 1.28486 1.21707 0.99544 0.96630 0.88215 1.20866 0.95263 0.79097 1.00855 1.21937 0.97850 1.01670 0.98436 1.22084 0.96827 0.99744 1.02469 1.77304 1.00233 1.09158 1.31110 1.48747 1.01456 1.07537 1.54217 1.19223 0.94571 0.72549 0.98032 1.21378 1.46353 0.97964 0.91525 0.92194 1.25652 0.94416 0.96211 1.01463 1.70015 1.45683 1.07339 1.33028 0.85487 0.78024 0.78265 0.79554 1.20109 1.20492 1.18937 0.89220 0.91745 0.87247 0.80599 0.71785 0.91071 0.89321 0.90237 0.90122 0.91014 0.93087 0.93831 0.91473 0.90157 0.92632 0.96390 0.93363 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.40 9.89 71.24 0.70 -1.69 16 2 C 0.10 3.45 6.92 41.39 0.29 3.74 16 3 C -0.30 -9.51 10.74 22.11 0.24 -9.27 16 4 C 0.28 10.11 7.76 133.39 1.04 11.14 16 5 N -1.01 -29.20 5.97 -54.60 -0.33 -29.52 16 6 S 2.80 90.16 5.84 -56.49 -0.33 89.83 16 7 O -0.99 -31.74 17.21 -128.00 -2.20 -33.94 16 8 O -0.99 -41.05 15.92 -128.00 -2.04 -43.09 16 9 N -0.99 -28.37 3.13 -516.50 -1.62 -29.99 16 10 C 0.08 1.70 9.35 127.77 1.19 2.89 16 11 C 0.14 4.73 2.47 44.99 0.11 4.84 16 12 C -0.14 -4.69 8.90 71.98 0.64 -4.05 16 13 C -0.15 -4.06 9.19 71.98 0.66 -3.39 16 14 N -0.35 -14.89 7.91 -54.54 -0.43 -15.32 16 15 N -0.34 -14.74 3.59 -338.44 -1.22 -15.96 16 16 C 0.28 13.66 5.81 85.63 0.50 14.15 16 17 C -0.53 -27.42 9.39 25.60 0.24 -27.18 16 18 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 19 C 0.02 1.20 5.46 84.65 0.46 1.66 16 20 N -0.92 -50.55 13.29 21.45 0.28 -50.27 16 21 Si 0.96 40.86 29.54 68.60 2.03 42.89 16 22 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 25 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 2.05 7.71 -2.39 -0.02 2.03 16 27 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.18 4.04 8.06 -2.91 -0.02 4.02 16 29 H 0.44 9.13 8.96 -96.74 -0.87 8.27 16 30 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.09 1.56 6.43 -2.39 -0.02 1.54 16 32 H 0.08 1.40 7.79 -2.39 -0.02 1.38 16 33 H 0.08 3.29 5.72 -2.39 -0.01 3.28 16 34 H 0.07 1.92 6.66 -2.38 -0.02 1.90 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 36 H 0.04 1.66 6.73 -2.39 -0.02 1.65 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.70 7.67 -2.39 -0.02 1.68 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.02 1.00 8.14 -2.39 -0.02 0.99 16 41 H 0.05 2.40 7.65 -2.39 -0.02 2.38 16 42 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -68.73 356.07 0.39 -68.34 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.17 Total: 24.19 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 6.07 Total: -7.16 kcal Atomic # 7 Polarization: -137.75 SS G_CDS: -3.30 Total: -141.06 kcal Atomic # 8 Polarization: -72.79 SS G_CDS: -4.24 Total: -77.03 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: 90.16 SS G_CDS: -0.33 Total: 89.83 kcal Total: -68.73 0.39 -68.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271066749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.359 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds