Wall clock time and date at job start Tue Mar 31 2020 11:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29034 * 124.91330 * 2 1 4 4 C 1.31776 * 117.12603 * 179.73408 * 3 2 1 5 5 C 1.50694 * 122.75407 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47818 * 144.97323 * 5 4 3 7 7 C 1.52997 * 109.47568 * 264.97995 * 5 4 3 8 8 N 1.46904 * 109.47081 * 24.97336 * 5 4 3 9 9 C 1.46901 * 111.00521 * 154.99777 * 8 5 4 10 10 H 1.09007 * 109.46512 * 35.00117 * 9 8 5 11 11 C 1.52989 * 109.47158 * 155.00152 * 9 8 5 12 12 C 1.50701 * 109.47620 * 295.00243 * 11 9 8 13 13 H 1.08001 * 119.99446 * 0.02562 * 12 11 9 14 14 C 1.37881 * 120.00573 * 180.02562 * 12 11 9 15 15 N 1.31508 * 120.00254 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99563 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47352 * 89.99925 * 16 14 12 18 18 H 1.48500 * 109.46870 * 210.00204 * 16 14 12 19 19 H 1.48503 * 109.47236 * 329.99601 * 16 14 12 20 20 C 1.50697 * 109.47047 * 275.00594 * 9 8 5 21 21 C 1.38231 * 120.00077 * 319.72221 * 20 9 8 22 22 C 1.38237 * 119.99690 * 179.79175 * 21 20 9 23 23 C 1.38234 * 120.00150 * 0.44220 * 22 21 20 24 24 C 1.38226 * 120.00062 * 359.80836 * 23 22 21 25 25 C 1.38235 * 120.00070 * 359.97438 * 24 23 22 26 26 C 1.33639 * 114.49979 * 359.97438 * 4 3 2 27 27 S 1.70972 * 124.92008 * 179.69305 * 2 1 3 28 28 H 1.09001 * 109.47444 * 90.00508 * 1 2 3 29 29 H 1.09009 * 109.47100 * 209.99885 * 1 2 3 30 30 H 1.08999 * 109.47544 * 329.99881 * 1 2 3 31 31 H 1.08993 * 109.47603 * 180.02562 * 7 5 4 32 32 H 1.09005 * 109.46947 * 299.99638 * 7 5 4 33 33 H 1.08997 * 109.47100 * 59.98888 * 7 5 4 34 34 H 1.00910 * 110.99768 * 31.04577 * 8 5 4 35 35 H 1.09001 * 109.47438 * 55.00264 * 11 9 8 36 36 H 1.09001 * 109.47271 * 175.00297 * 11 9 8 37 37 H 0.96992 * 120.00087 * 179.97438 * 15 14 12 38 38 H 1.07995 * 120.00112 * 359.97438 * 21 20 9 39 39 H 1.08001 * 119.99806 * 180.27470 * 22 21 20 40 40 H 1.08007 * 119.99688 * 179.83608 * 23 22 21 41 41 H 1.08002 * 120.00326 * 180.02562 * 24 23 22 42 42 H 1.08002 * 120.00094 * 179.97438 * 25 24 23 43 43 H 1.08002 * 126.03942 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8796 0.0054 5 6 4.5306 2.0247 0.0067 6 1 5.4040 1.7553 0.6005 7 6 4.9636 2.3272 -1.4292 8 7 3.8925 3.2142 0.5864 9 6 4.8954 4.1287 1.1483 10 1 5.7963 4.1009 0.5353 11 6 4.3345 5.5520 1.1664 12 6 4.1136 6.0230 -0.2479 13 1 4.3493 5.3720 -1.0768 14 6 3.6106 7.2849 -0.4838 15 7 3.4174 7.6957 -1.7180 16 14 3.2036 8.4110 0.9500 17 1 4.3981 9.2223 1.2968 18 1 2.0863 9.3123 0.5698 19 1 2.8028 7.5936 2.1232 20 6 5.2313 3.7031 2.5544 21 6 4.2305 3.2667 3.4021 22 6 4.5393 2.8722 4.6905 23 6 5.8476 2.9229 5.1341 24 6 6.8476 3.3643 4.2881 25 6 6.5395 3.7545 2.9982 26 6 3.9354 -0.4004 0.0108 27 16 2.4857 -1.4019 0.0075 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 5.6724 3.1551 -1.4283 32 1 5.4371 1.4446 -1.8594 33 1 4.0902 2.5966 -2.0230 34 1 3.2092 2.9551 1.2822 35 1 3.3869 5.5623 1.7050 36 1 5.0423 6.2151 1.6638 37 1 3.0632 8.5833 -1.8839 38 1 3.2078 3.2310 3.0570 39 1 3.7580 2.5270 5.3515 40 1 6.0884 2.6172 6.1416 41 1 7.8698 3.4035 4.6344 42 1 7.3208 4.0998 2.3373 43 1 4.9545 -0.7578 0.0154 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271450948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:08 Heat of formation + Delta-G solvation = 50.848295 kcal Electronic energy + Delta-G solvation = -24035.805981 eV Core-core repulsion = 20785.729647 eV Total energy + Delta-G solvation = -3250.076334 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20406 -40.34313 -37.70076 -35.18745 -34.05113 -32.28442 -31.81236 -30.91995 -29.98927 -28.83713 -26.51008 -24.96660 -23.63422 -23.16440 -22.47671 -21.02053 -20.54427 -19.01002 -18.52898 -17.80066 -16.75099 -16.41319 -16.13078 -16.10658 -15.91761 -15.50385 -15.18923 -14.86209 -14.66697 -14.25074 -14.22981 -14.15785 -13.86346 -13.72184 -13.41861 -13.17226 -12.98791 -12.97547 -12.88062 -12.58428 -12.35545 -12.30735 -12.00491 -11.79498 -11.66409 -11.58888 -11.17946 -10.66786 -10.47386 -10.32210 -9.82105 -9.61598 -9.57542 -9.08670 -8.16169 -6.13891 -0.22248 0.46427 0.47454 0.50324 0.75968 1.34338 1.36896 1.48106 1.84017 2.41980 2.89112 3.09290 3.18063 3.39501 3.82981 3.92183 4.00344 4.16009 4.21381 4.29013 4.34791 4.36801 4.46360 4.50644 4.64684 4.66530 4.68237 4.68915 4.80149 4.87821 4.96627 5.04943 5.10862 5.15344 5.20121 5.23924 5.37392 5.42401 5.57815 5.60983 5.70400 5.75606 6.13844 6.31891 6.48780 6.65906 6.93249 6.95267 7.45881 9.01115 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009592 B = 0.005073 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.490206 B = 5517.551962 C = 7212.852793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.033 3.967 3 N -0.493 5.493 4 C 0.057 3.943 5 C 0.165 3.835 6 H 0.061 0.939 7 C -0.124 4.124 8 N -0.661 5.661 9 C 0.148 3.852 10 H 0.070 0.930 11 C 0.012 3.988 12 C -0.482 4.482 13 H 0.041 0.959 14 C 0.001 3.999 15 N -0.956 5.956 16 Si 0.939 3.061 17 H -0.268 1.268 18 H -0.288 1.288 19 H -0.257 1.257 20 C -0.116 4.116 21 C -0.133 4.133 22 C -0.121 4.121 23 C -0.127 4.127 24 C -0.118 4.118 25 C -0.128 4.128 26 C -0.263 4.263 27 S 0.161 5.839 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.339 0.661 35 H 0.008 0.992 36 H 0.014 0.986 37 H 0.260 0.740 38 H 0.107 0.893 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.125 0.875 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 -21.374 11.535 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.245 4.245 3 N -0.208 5.208 4 C -0.075 4.075 5 C 0.053 3.947 6 H 0.079 0.921 7 C -0.182 4.182 8 N -0.293 5.293 9 C 0.038 3.962 10 H 0.088 0.912 11 C -0.026 4.026 12 C -0.521 4.521 13 H 0.060 0.940 14 C -0.194 4.194 15 N -0.599 5.599 16 Si 0.764 3.236 17 H -0.194 1.194 18 H -0.214 1.214 19 H -0.181 1.181 20 C -0.118 4.118 21 C -0.152 4.152 22 C -0.139 4.139 23 C -0.145 4.145 24 C -0.135 4.135 25 C -0.147 4.147 26 C -0.402 4.402 27 S 0.415 5.585 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.160 0.840 35 H 0.026 0.974 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.125 0.875 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.165 0.835 42 H 0.143 0.857 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.761 -21.486 10.825 24.071 hybrid contribution 0.478 1.463 0.559 1.637 sum 1.239 -20.023 11.384 23.066 Atomic orbital electron populations 1.20593 0.83388 1.05061 1.04762 1.27681 1.03257 0.91048 1.02495 1.66060 1.05080 1.32945 1.16758 1.20283 0.90191 0.94420 1.02616 1.19991 0.92306 0.85893 0.96521 0.92132 1.21695 1.00382 1.01130 0.95022 1.60453 1.15066 1.14726 1.39016 1.20403 0.94177 0.92887 0.88771 0.91194 1.19428 0.95279 0.92435 0.95413 1.21227 1.39852 0.98538 0.92448 0.94044 1.25836 0.96026 0.99830 0.97731 1.70063 1.48744 1.19702 1.21354 0.85831 0.78201 0.78972 0.80593 1.19351 1.21410 1.18147 1.20941 0.94676 0.98710 0.97501 1.21004 0.98463 1.00683 0.95024 1.21355 0.97861 0.99575 0.95068 1.21460 0.92447 0.99846 1.00747 1.21448 1.00705 0.98329 0.93060 1.21269 0.95540 1.00473 0.97392 1.27038 1.04925 0.95311 1.12975 1.83465 0.96051 1.11082 1.67855 0.88749 0.87419 0.90032 0.93231 0.90545 0.94682 0.83953 0.97387 0.96763 0.93100 0.87533 0.84292 0.83244 0.83505 0.85726 0.78702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.46 71.23 0.75 -0.63 16 2 C 0.03 0.82 7.39 88.52 0.65 1.47 16 3 N -0.49 -16.23 9.76 -179.42 -1.75 -17.98 16 4 C 0.06 1.76 5.59 41.52 0.23 1.99 16 5 C 0.17 5.65 2.76 44.17 0.12 5.77 16 6 H 0.06 1.91 7.63 -2.39 -0.02 1.89 16 7 C -0.12 -4.41 9.38 71.98 0.68 -3.73 16 8 N -0.66 -26.84 5.58 -477.18 -2.66 -29.50 16 9 C 0.15 6.07 1.98 44.16 0.09 6.16 16 10 H 0.07 2.95 6.98 -2.38 -0.02 2.93 16 11 C 0.01 0.61 3.70 29.84 0.11 0.72 16 12 C -0.48 -28.81 9.39 25.60 0.24 -28.56 16 13 H 0.04 2.73 7.99 -2.91 -0.02 2.71 16 14 C 0.00 0.04 5.47 84.66 0.46 0.50 16 15 N -0.96 -62.64 13.96 21.45 0.30 -62.34 16 16 Si 0.94 47.21 27.47 68.60 1.88 49.10 16 17 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 19 H -0.26 -12.38 6.54 99.48 0.65 -11.73 16 20 C -0.12 -3.99 4.61 -19.87 -0.09 -4.08 16 21 C -0.13 -4.23 9.11 22.27 0.20 -4.03 16 22 C -0.12 -3.04 10.05 22.27 0.22 -2.82 16 23 C -0.13 -2.79 10.05 22.27 0.22 -2.56 16 24 C -0.12 -2.75 10.05 22.27 0.22 -2.53 16 25 C -0.13 -3.77 9.67 22.27 0.22 -3.56 16 26 C -0.26 -6.21 11.14 66.78 0.74 -5.46 16 27 S 0.16 3.08 23.18 -56.49 -1.31 1.77 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.90 7.43 -2.39 -0.02 1.88 16 32 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.34 13.59 5.58 -89.69 -0.50 13.09 16 35 H 0.01 0.40 7.20 -2.39 -0.02 0.39 16 36 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 37 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 38 H 0.11 3.57 6.53 -2.91 -0.02 3.55 16 39 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 40 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 42 H 0.12 3.46 8.04 -2.91 -0.02 3.44 16 43 H 0.20 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -75.17 367.68 1.98 -73.18 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.45 Total: 27.12 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 5.07 Total: -41.35 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -4.11 Total: -109.82 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.88 Total: 49.10 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.31 Total: 1.77 kcal Total: -75.17 1.98 -73.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271450948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.031 kcal (2) G-P(sol) polarization free energy of solvation -75.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds