Wall clock time and date at job start Tue Mar 31 2020 11:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29028 * 124.91542 * 2 1 4 4 C 1.31778 * 117.12531 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.75417 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47522 * 145.02765 * 5 4 3 7 7 C 1.52995 * 109.47187 * 265.02990 * 5 4 3 8 8 N 1.46908 * 109.46745 * 25.02783 * 5 4 3 9 9 C 1.46900 * 110.99827 * 155.00067 * 8 5 4 10 10 H 1.08999 * 109.46853 * 325.00087 * 9 8 5 11 11 C 1.52992 * 109.47083 * 205.00117 * 9 8 5 12 12 C 1.50700 * 109.47257 * 64.99908 * 11 9 8 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 11 9 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 9 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 C 1.50703 * 109.46895 * 85.00065 * 9 8 5 21 21 C 1.38230 * 120.00102 * 39.72780 * 20 9 8 22 22 C 1.38238 * 119.99939 * 179.78898 * 21 20 9 23 23 C 1.38233 * 119.99967 * 0.43452 * 22 21 20 24 24 C 1.38244 * 119.99937 * 359.82021 * 23 22 21 25 25 C 1.38231 * 119.99897 * 359.97027 * 24 23 22 26 26 C 1.33642 * 114.50033 * 0.23695 * 4 3 2 27 27 S 1.70973 * 124.91767 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47135 * 89.99663 * 1 2 3 29 29 H 1.08995 * 109.47429 * 210.00136 * 1 2 3 30 30 H 1.09002 * 109.47328 * 329.99950 * 1 2 3 31 31 H 1.08999 * 109.47678 * 299.99963 * 7 5 4 32 32 H 1.09007 * 109.47219 * 59.99755 * 7 5 4 33 33 H 1.08997 * 109.47216 * 179.97438 * 7 5 4 34 34 H 1.00899 * 110.99746 * 31.04841 * 8 5 4 35 35 H 1.09004 * 109.47330 * 304.99931 * 11 9 8 36 36 H 1.08997 * 109.47279 * 185.00418 * 11 9 8 37 37 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 38 38 H 1.07998 * 119.99864 * 359.97438 * 21 20 9 39 39 H 1.08002 * 119.99982 * 180.27780 * 22 21 20 40 40 H 1.07994 * 120.00536 * 179.83522 * 23 22 21 41 41 H 1.07998 * 120.00085 * 179.97438 * 24 23 22 42 42 H 1.07995 * 119.99905 * 179.97438 * 25 24 23 43 43 H 1.07994 * 126.04100 * 179.76524 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 1 5.4066 1.7538 0.5895 7 6 4.9577 2.3299 -1.4371 8 7 3.8951 3.2129 0.5850 9 6 4.9006 4.1261 1.1445 10 1 5.7223 3.5473 1.5663 11 6 4.2608 4.9782 2.2423 12 6 3.8455 4.0920 3.3883 13 1 4.0200 3.0273 3.3383 14 6 3.2417 4.6402 4.5001 15 7 3.0332 5.9372 4.5628 16 14 2.7275 3.5418 5.9208 17 1 3.8467 3.4303 6.8904 18 1 1.5432 4.1292 6.5972 19 1 2.3839 2.1926 5.4041 20 6 5.4261 5.0236 0.0540 21 6 4.5631 5.5318 -0.8988 22 6 5.0445 6.3587 -1.8965 23 6 6.3904 6.6700 -1.9468 24 6 7.2543 6.1575 -0.9970 25 6 6.7722 5.3342 0.0032 26 6 3.9354 -0.4006 -0.0040 27 16 2.4857 -1.4019 -0.0006 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 5.4292 1.4483 -1.8712 32 1 4.0817 2.6008 -2.0266 33 1 5.6658 3.1585 -1.4375 34 1 3.2149 2.9523 1.2832 35 1 3.3849 5.4888 1.8420 36 1 4.9811 5.7158 2.5960 37 1 2.6081 6.3228 5.3448 38 1 3.5123 5.2853 -0.8618 39 1 4.3695 6.7594 -2.6383 40 1 6.7670 7.3138 -2.7278 41 1 8.3059 6.4004 -1.0365 42 1 7.4472 4.9335 0.7449 43 1 4.9545 -0.7580 -0.0080 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271450949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:12 Heat of formation + Delta-G solvation = 62.214667 kcal Electronic energy + Delta-G solvation = -24025.711826 eV Core-core repulsion = 20776.128374 eV Total energy + Delta-G solvation = -3249.583451 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.97939 -38.89061 -36.23872 -33.60096 -32.31467 -31.00765 -30.33538 -29.51793 -28.20436 -27.35093 -24.88637 -23.74667 -22.13040 -21.80250 -21.23023 -19.57555 -19.35745 -17.36276 -16.61014 -16.04529 -15.57634 -15.05550 -14.78820 -14.67162 -14.51153 -14.30623 -13.90889 -13.38036 -13.24057 -12.85278 -12.76176 -12.68031 -12.28366 -12.16544 -12.13450 -11.99032 -11.77902 -11.57288 -11.05484 -11.00991 -10.92072 -10.59730 -10.53930 -10.40059 -10.26442 -9.57844 -9.41642 -9.29197 -9.15672 -8.58224 -8.42619 -8.36116 -7.98586 -7.69659 -6.03180 -4.06610 0.80982 1.44816 1.79840 1.91148 1.96783 2.97110 3.28789 3.35650 3.38343 4.14909 4.33881 4.43686 4.80779 4.97256 5.24941 5.31184 5.34142 5.37683 5.41208 5.42971 5.47316 5.56674 5.68991 5.70850 5.75654 5.86829 5.98561 6.09419 6.14217 6.22240 6.27368 6.38946 6.49370 6.57703 6.63018 6.77302 6.96223 7.04037 7.26337 7.49618 7.57896 7.62393 7.89599 7.95608 8.08980 8.30108 8.35696 8.98413 9.57367 11.07402 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.007700 B = 0.005982 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.623268 B = 4679.466137 C = 7476.181683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.052 3.948 3 N -0.443 5.443 4 C 0.084 3.916 5 C 0.159 3.841 6 H 0.053 0.947 7 C -0.133 4.133 8 N -0.661 5.661 9 C 0.125 3.875 10 H 0.040 0.960 11 C 0.030 3.970 12 C -0.523 4.523 13 H 0.051 0.949 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.048 4.048 21 C -0.085 4.085 22 C -0.130 4.130 23 C -0.139 4.139 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.263 4.263 27 S 0.087 5.913 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.367 0.633 35 H 0.029 0.971 36 H 0.023 0.977 37 H 0.261 0.739 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.336 -10.590 -12.788 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.227 4.227 3 N -0.158 5.158 4 C -0.048 4.048 5 C 0.046 3.954 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.297 5.297 9 C 0.015 3.985 10 H 0.058 0.942 11 C -0.007 4.007 12 C -0.561 4.561 13 H 0.069 0.931 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.049 4.049 21 C -0.103 4.103 22 C -0.149 4.149 23 C -0.157 4.157 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.402 4.402 27 S 0.340 5.660 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.191 0.809 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.147 0.853 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.723 -10.694 -13.240 17.035 hybrid contribution 0.714 -0.347 1.706 1.881 sum 1.437 -11.041 -11.534 16.031 Atomic orbital electron populations 1.20435 0.85311 1.04331 1.03645 1.27122 1.01784 0.90476 1.03283 1.66061 1.04293 1.30684 1.14718 1.20493 0.90373 0.94025 0.99919 1.20151 0.91718 0.86541 0.97028 0.92908 1.21852 1.01583 1.00815 0.94858 1.60431 1.15749 1.13363 1.40134 1.20756 0.93157 0.92923 0.91672 0.94238 1.19236 0.96225 0.94664 0.90613 1.21100 1.39597 0.93554 1.01880 0.93108 1.24949 0.95728 0.94867 0.98311 1.69964 1.42881 1.10381 1.29453 0.86650 0.78199 0.80811 0.82689 1.20741 1.21129 1.19993 1.20177 0.92537 0.96690 0.95480 1.21063 1.00594 0.95302 0.93352 1.21118 0.95312 0.99235 0.99187 1.20954 0.93957 1.01309 0.99460 1.20951 0.99021 0.98829 0.95801 1.21029 0.95405 0.99568 0.98489 1.26693 1.02761 0.95705 1.15038 1.83764 0.98618 1.13853 1.69718 0.89780 0.90400 0.88860 0.93688 0.92057 0.91432 0.80924 0.95258 0.95858 0.92918 0.85313 0.86990 0.87221 0.87058 0.86796 0.80924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.46 36.01 0.38 -0.40 16 2 C 0.05 0.72 7.39 -13.46 -0.10 0.62 16 3 N -0.44 -7.44 9.76 -8.06 -0.08 -7.52 16 4 C 0.08 1.35 5.59 -84.23 -0.47 0.88 16 5 C 0.16 2.63 2.96 -68.86 -0.20 2.43 16 6 H 0.05 0.88 7.43 -51.93 -0.39 0.49 16 7 C -0.13 -1.98 8.83 37.16 0.33 -1.65 16 8 N -0.66 -12.86 5.23 -102.17 -0.53 -13.39 16 9 C 0.12 2.56 2.19 -68.87 -0.15 2.41 16 10 H 0.04 0.83 7.29 -51.93 -0.38 0.45 16 11 C 0.03 0.76 4.55 -27.89 -0.13 0.63 16 12 C -0.52 -14.31 8.12 -34.44 -0.28 -14.59 16 13 H 0.05 1.37 7.49 -52.49 -0.39 0.97 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 16 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.05 -0.89 2.95 -104.62 -0.31 -1.20 16 21 C -0.08 -1.51 8.59 -39.58 -0.34 -1.85 16 22 C -0.13 -2.02 10.05 -39.58 -0.40 -2.41 16 23 C -0.14 -2.00 10.05 -39.58 -0.40 -2.40 16 24 C -0.13 -1.91 10.05 -39.58 -0.40 -2.30 16 25 C -0.13 -2.13 9.66 -39.58 -0.38 -2.51 16 26 C -0.26 -3.54 11.14 29.12 0.32 -3.22 16 27 S 0.09 1.02 23.18 -107.50 -2.49 -1.47 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.07 1.05 5.93 -51.93 -0.31 0.74 16 34 H 0.37 8.10 6.43 -39.29 -0.25 7.85 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.13 2.41 7.71 -52.49 -0.40 2.01 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.11 1.81 8.04 -52.49 -0.42 1.39 16 43 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -30.37 368.17 -10.79 -41.16 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.33 Total: 8.65 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -2.62 Total: -23.88 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.12 Total: -46.56 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.37 -10.79 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271450949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.378 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds