Wall clock time and date at job start Tue Mar 31 2020 11:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29028 * 124.91542 * 2 1 4 4 C 1.31778 * 117.12531 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.75417 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47522 * 145.02765 * 5 4 3 7 7 C 1.52995 * 109.47187 * 265.02990 * 5 4 3 8 8 N 1.46908 * 109.46745 * 25.02783 * 5 4 3 9 9 C 1.46900 * 110.99827 * 155.00067 * 8 5 4 10 10 H 1.08999 * 109.46853 * 325.00087 * 9 8 5 11 11 C 1.52992 * 109.47083 * 205.00117 * 9 8 5 12 12 C 1.50700 * 109.47257 * 64.99908 * 11 9 8 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 11 9 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 9 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 C 1.50703 * 109.46895 * 85.00065 * 9 8 5 21 21 C 1.38230 * 120.00102 * 39.72780 * 20 9 8 22 22 C 1.38238 * 119.99939 * 179.78898 * 21 20 9 23 23 C 1.38233 * 119.99967 * 0.43452 * 22 21 20 24 24 C 1.38244 * 119.99937 * 359.82021 * 23 22 21 25 25 C 1.38231 * 119.99897 * 359.97027 * 24 23 22 26 26 C 1.33642 * 114.50033 * 0.23695 * 4 3 2 27 27 S 1.70973 * 124.91767 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47135 * 89.99663 * 1 2 3 29 29 H 1.08995 * 109.47429 * 210.00136 * 1 2 3 30 30 H 1.09002 * 109.47328 * 329.99950 * 1 2 3 31 31 H 1.08999 * 109.47678 * 299.99963 * 7 5 4 32 32 H 1.09007 * 109.47219 * 59.99755 * 7 5 4 33 33 H 1.08997 * 109.47216 * 179.97438 * 7 5 4 34 34 H 1.00899 * 110.99746 * 31.04841 * 8 5 4 35 35 H 1.09004 * 109.47330 * 304.99931 * 11 9 8 36 36 H 1.08997 * 109.47279 * 185.00418 * 11 9 8 37 37 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 38 38 H 1.07998 * 119.99864 * 359.97438 * 21 20 9 39 39 H 1.08002 * 119.99982 * 180.27780 * 22 21 20 40 40 H 1.07994 * 120.00536 * 179.83522 * 23 22 21 41 41 H 1.07998 * 120.00085 * 179.97438 * 24 23 22 42 42 H 1.07995 * 119.99905 * 179.97438 * 25 24 23 43 43 H 1.07994 * 126.04100 * 179.76524 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 1 5.4066 1.7538 0.5895 7 6 4.9577 2.3299 -1.4371 8 7 3.8951 3.2129 0.5850 9 6 4.9006 4.1261 1.1445 10 1 5.7223 3.5473 1.5663 11 6 4.2608 4.9782 2.2423 12 6 3.8455 4.0920 3.3883 13 1 4.0200 3.0273 3.3383 14 6 3.2417 4.6402 4.5001 15 7 3.0332 5.9372 4.5628 16 14 2.7275 3.5418 5.9208 17 1 3.8467 3.4303 6.8904 18 1 1.5432 4.1292 6.5972 19 1 2.3839 2.1926 5.4041 20 6 5.4261 5.0236 0.0540 21 6 4.5631 5.5318 -0.8988 22 6 5.0445 6.3587 -1.8965 23 6 6.3904 6.6700 -1.9468 24 6 7.2543 6.1575 -0.9970 25 6 6.7722 5.3342 0.0032 26 6 3.9354 -0.4006 -0.0040 27 16 2.4857 -1.4019 -0.0006 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 5.4292 1.4483 -1.8712 32 1 4.0817 2.6008 -2.0266 33 1 5.6658 3.1585 -1.4375 34 1 3.2149 2.9523 1.2832 35 1 3.3849 5.4888 1.8420 36 1 4.9811 5.7158 2.5960 37 1 2.6081 6.3228 5.3448 38 1 3.5123 5.2853 -0.8618 39 1 4.3695 6.7594 -2.6383 40 1 6.7670 7.3138 -2.7278 41 1 8.3059 6.4004 -1.0365 42 1 7.4472 4.9335 0.7449 43 1 4.9545 -0.7580 -0.0080 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271450949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:11 Heat of formation + Delta-G solvation = 45.092263 kcal Electronic energy + Delta-G solvation = -24026.454309 eV Core-core repulsion = 20776.128374 eV Total energy + Delta-G solvation = -3250.325934 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.14060 -40.20099 -37.67072 -35.32509 -33.96247 -32.18304 -31.60008 -30.95409 -29.60245 -28.73892 -26.52377 -25.06976 -23.64371 -23.23045 -22.41687 -21.00576 -20.53394 -18.65263 -18.47343 -17.46617 -16.95875 -16.42486 -16.30163 -16.04094 -15.90077 -15.56897 -15.10687 -14.69389 -14.49750 -14.22587 -14.06921 -13.93784 -13.70745 -13.56351 -13.48485 -13.13601 -13.04237 -12.93677 -12.75329 -12.72902 -12.39593 -12.29689 -12.10765 -11.86358 -11.70928 -11.43474 -11.14743 -10.60977 -10.48217 -10.31989 -9.65722 -9.61326 -9.36406 -9.21694 -8.21960 -6.33008 -0.22097 0.47168 0.62249 0.68666 0.76221 1.34807 1.35793 1.46360 1.85386 2.36480 3.01913 3.09029 3.14968 3.42299 3.88252 4.08452 4.15900 4.25072 4.31410 4.35477 4.40010 4.44818 4.46540 4.62155 4.67150 4.68768 4.76821 4.81838 4.87311 4.91063 4.97954 5.06627 5.23807 5.24450 5.32711 5.36408 5.40730 5.50469 5.70071 5.75605 5.80164 5.92032 6.15069 6.28987 6.41389 6.60198 6.80458 6.94800 7.35227 8.89349 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.007700 B = 0.005982 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.623268 B = 4679.466137 C = 7476.181683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.033 3.967 3 N -0.489 5.489 4 C 0.055 3.945 5 C 0.159 3.841 6 H 0.051 0.949 7 C -0.118 4.118 8 N -0.661 5.661 9 C 0.140 3.860 10 H 0.031 0.969 11 C 0.044 3.956 12 C -0.532 4.532 13 H 0.052 0.948 14 C 0.008 3.992 15 N -0.927 5.927 16 Si 0.959 3.041 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.269 1.269 20 C -0.068 4.068 21 C -0.101 4.101 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.139 4.139 26 C -0.267 4.267 27 S 0.155 5.845 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.348 0.652 35 H -0.005 1.005 36 H -0.008 1.008 37 H 0.264 0.736 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.117 0.883 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.153 -12.369 -13.966 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.245 4.245 3 N -0.205 5.205 4 C -0.077 4.077 5 C 0.046 3.954 6 H 0.068 0.932 7 C -0.177 4.177 8 N -0.294 5.294 9 C 0.030 3.970 10 H 0.049 0.951 11 C 0.006 3.994 12 C -0.570 4.570 13 H 0.070 0.930 14 C -0.190 4.190 15 N -0.567 5.567 16 Si 0.783 3.217 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.069 4.069 21 C -0.119 4.119 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.141 4.141 25 C -0.158 4.158 26 C -0.406 4.406 27 S 0.409 5.591 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.169 0.831 35 H 0.013 0.987 36 H 0.011 0.989 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.135 0.865 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.551 -12.492 -14.440 19.156 hybrid contribution 0.462 0.178 2.003 2.063 sum 2.013 -12.314 -12.437 17.617 Atomic orbital electron populations 1.20588 0.83338 1.04857 1.04968 1.27694 1.03299 0.91047 1.02500 1.66038 1.04987 1.32828 1.16622 1.20395 0.90339 0.94598 1.02330 1.20167 0.91824 0.85918 0.97471 0.93168 1.21712 1.00797 1.01488 0.93664 1.60453 1.15240 1.14803 1.38944 1.20417 0.92526 0.92745 0.91322 0.95073 1.18980 0.94222 0.94296 0.91868 1.21398 1.39278 0.93763 1.02524 0.92994 1.25839 0.95740 0.96238 1.01194 1.70099 1.43879 1.12256 1.30430 0.85549 0.78005 0.78927 0.79174 1.19786 1.20594 1.19308 1.19994 0.93691 0.97645 0.95573 1.20967 0.99548 0.96812 0.94604 1.21390 0.96595 0.98264 0.98673 1.21383 0.93158 1.00567 0.99722 1.21320 1.00785 0.97360 0.94642 1.21184 0.94652 1.00371 0.99560 1.27038 1.04843 0.95417 1.13314 1.83455 0.96275 1.11337 1.68002 0.87991 0.87859 0.90300 0.91302 0.93401 0.92204 0.83105 0.98655 0.98939 0.92758 0.87491 0.84713 0.83561 0.83856 0.86488 0.78739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 10.46 71.24 0.75 -0.74 16 2 C 0.03 0.87 7.39 88.52 0.65 1.52 16 3 N -0.49 -16.72 9.76 -179.40 -1.75 -18.47 16 4 C 0.06 1.79 5.59 41.52 0.23 2.02 16 5 C 0.16 5.42 2.96 44.17 0.13 5.55 16 6 H 0.05 1.71 7.43 -2.39 -0.02 1.69 16 7 C -0.12 -3.55 8.83 71.98 0.64 -2.92 16 8 N -0.66 -27.33 5.23 -477.16 -2.49 -29.83 16 9 C 0.14 6.12 2.19 44.17 0.10 6.22 16 10 H 0.03 1.39 7.29 -2.39 -0.02 1.37 16 11 C 0.04 2.38 4.55 29.85 0.14 2.52 16 12 C -0.53 -30.43 8.12 25.60 0.21 -30.22 16 13 H 0.05 2.90 7.49 -2.91 -0.02 2.88 16 14 C 0.01 0.49 5.46 84.66 0.46 0.95 16 15 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 16 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 C -0.07 -2.63 2.95 -19.87 -0.06 -2.69 16 21 C -0.10 -3.71 8.59 22.27 0.19 -3.52 16 22 C -0.13 -3.92 10.05 22.27 0.22 -3.69 16 23 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 24 C -0.12 -3.39 10.05 22.27 0.22 -3.17 16 25 C -0.14 -4.69 9.66 22.27 0.22 -4.47 16 26 C -0.27 -6.80 11.14 66.78 0.74 -6.06 16 27 S 0.15 3.29 23.18 -56.49 -1.31 1.98 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.06 1.87 5.93 -2.39 -0.01 1.86 16 34 H 0.35 16.43 6.43 -89.69 -0.58 15.86 16 35 H 0.00 -0.30 8.14 -2.38 -0.02 -0.32 16 36 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 37 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.11 4.32 7.71 -2.91 -0.02 4.30 16 39 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 42 H 0.12 3.76 8.04 -2.91 -0.02 3.74 16 43 H 0.20 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -69.39 368.17 2.25 -67.14 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.43 Total: 30.74 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 5.06 Total: -41.88 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -3.96 Total: -105.14 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.31 Total: 1.98 kcal Total: -69.39 2.25 -67.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271450949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.233 kcal (2) G-P(sol) polarization free energy of solvation -69.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds