Wall clock time and date at job start Tue Mar 31 2020 11:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29035 * 124.91925 * 2 1 4 4 C 1.31772 * 117.12523 * 179.67715 * 3 2 1 5 5 C 1.50700 * 122.75242 * 180.33360 * 4 3 2 6 6 H 1.08996 * 109.47892 * 215.20435 * 5 4 3 7 7 C 1.53005 * 109.46970 * 95.19987 * 5 4 3 8 8 N 1.46904 * 109.46986 * 335.20913 * 5 4 3 9 9 C 1.46900 * 110.99776 * 206.51611 * 8 5 4 10 10 H 1.09005 * 109.46861 * 325.92389 * 9 8 5 11 11 C 1.53001 * 109.46596 * 205.93470 * 9 8 5 12 12 C 1.50704 * 109.47541 * 65.47316 * 11 9 8 13 13 H 1.07999 * 119.99509 * 5.07345 * 12 11 9 14 14 C 1.37875 * 119.99971 * 185.07313 * 12 11 9 15 15 N 1.31512 * 120.00021 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99770 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47268 * 90.00177 * 16 14 12 18 18 H 1.48497 * 109.46984 * 210.00126 * 16 14 12 19 19 H 1.48501 * 109.47119 * 330.00038 * 16 14 12 20 20 C 1.50693 * 109.47676 * 85.93233 * 9 8 5 21 21 C 1.38236 * 120.00126 * 39.72192 * 20 9 8 22 22 C 1.38230 * 119.99971 * 179.78713 * 21 20 9 23 23 C 1.38236 * 119.99974 * 0.44637 * 22 21 20 24 24 C 1.38230 * 120.00090 * 359.80654 * 23 22 21 25 25 C 1.38231 * 119.99977 * 359.97438 * 24 23 22 26 26 C 1.33642 * 114.50294 * 0.51903 * 4 3 2 27 27 S 1.70975 * 124.91807 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47555 * 300.01724 * 1 2 3 30 30 H 1.09007 * 109.47160 * 60.01601 * 1 2 3 31 31 H 1.09000 * 109.47000 * 55.22324 * 7 5 4 32 32 H 1.09007 * 109.46976 * 175.21822 * 7 5 4 33 33 H 1.08997 * 109.47473 * 295.22016 * 7 5 4 34 34 H 1.00889 * 111.00385 * 82.55086 * 8 5 4 35 35 H 1.09003 * 109.46741 * 185.47502 * 11 9 8 36 36 H 1.08999 * 109.47202 * 305.46855 * 11 9 8 37 37 H 0.97001 * 119.99728 * 179.97438 * 15 14 12 38 38 H 1.07995 * 119.99747 * 0.02562 * 21 20 9 39 39 H 1.08001 * 120.00254 * 180.27604 * 22 21 20 40 40 H 1.08001 * 119.99885 * 179.83279 * 23 22 21 41 41 H 1.08000 * 120.00200 * 179.97438 * 24 23 22 42 42 H 1.08006 * 120.00163 * 179.97438 * 25 24 23 43 43 H 1.08005 * 126.03748 * 179.78381 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8793 0.0066 5 6 4.5307 2.0245 0.0148 6 1 5.4082 1.7564 -0.5735 7 6 4.9538 2.3234 1.4545 8 7 3.8967 3.2154 -0.5663 9 6 4.9009 4.1140 -1.1511 10 1 5.8160 4.0697 -0.5604 11 6 4.3639 5.5467 -1.1526 12 6 4.1969 6.0222 0.2676 13 1 4.5248 5.4002 1.0874 14 6 3.6254 7.2512 0.5204 15 7 3.2256 8.0084 -0.4778 16 14 3.4177 7.8403 2.2809 17 1 4.6273 8.5949 2.6964 18 1 2.2279 8.7243 2.3700 19 1 3.2328 6.6698 3.1760 20 6 5.1950 3.6863 -2.5658 21 6 4.1680 3.2579 -3.3860 22 6 4.4371 2.8697 -4.6851 23 6 5.7345 2.9010 -5.1611 24 6 6.7622 3.3244 -4.3393 25 6 6.4925 3.7169 -3.0416 26 6 3.9354 -0.4006 0.0015 27 16 2.4856 -1.4019 0.0006 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5141 0.8898 30 1 -0.3634 0.5136 -0.8902 31 1 5.3466 1.4161 1.9135 32 1 5.7252 3.0936 1.4541 33 1 4.0912 2.6733 2.0215 34 1 3.3356 3.6976 0.1197 35 1 5.0664 6.1974 -1.6734 36 1 3.3997 5.5728 -1.6603 37 1 2.8233 8.8728 -0.2999 38 1 3.1549 3.2302 -3.0130 39 1 3.6341 2.5393 -5.3273 40 1 5.9452 2.5951 -6.1752 41 1 7.7760 3.3485 -4.7111 42 1 7.2955 4.0473 -2.3994 43 1 4.9546 -0.7581 0.0021 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271450950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:15 Heat of formation + Delta-G solvation = 59.176489 kcal Electronic energy + Delta-G solvation = -23997.553983 eV Core-core repulsion = 20747.838787 eV Total energy + Delta-G solvation = -3249.715196 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.87545 -38.84250 -36.39108 -33.58382 -32.30789 -31.17390 -30.36434 -29.19487 -28.16380 -27.33841 -24.76245 -23.85561 -22.12727 -21.82133 -21.37796 -19.60909 -19.35178 -17.29398 -16.57419 -16.04565 -15.53714 -14.91457 -14.85708 -14.63425 -14.52874 -14.11474 -13.73751 -13.56785 -13.22286 -12.88069 -12.81960 -12.72120 -12.24787 -12.17554 -12.14905 -12.02564 -12.00762 -11.48797 -11.08901 -11.00105 -10.90294 -10.61954 -10.52134 -10.45873 -10.29801 -9.56080 -9.34731 -9.23439 -9.15973 -8.54016 -8.42277 -8.36615 -8.03619 -7.64497 -6.02550 -4.06233 0.86449 1.49433 1.83535 1.90313 1.96223 3.05300 3.29796 3.36979 3.38999 4.21603 4.33244 4.44048 4.84096 5.02995 5.26450 5.32055 5.34063 5.36715 5.41874 5.44770 5.46828 5.52793 5.55400 5.71902 5.72522 5.83650 5.95916 6.06328 6.12071 6.14815 6.29901 6.33738 6.48369 6.56081 6.61039 6.76945 6.94955 7.03291 7.25635 7.48906 7.57499 7.63668 7.94062 7.97838 8.12636 8.30124 8.35629 8.99535 9.58026 11.08032 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008619 B = 0.005333 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.810621 B = 5249.193318 C = 7386.226204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.049 3.951 3 N -0.438 5.438 4 C 0.106 3.894 5 C 0.156 3.844 6 H 0.085 0.915 7 C -0.174 4.174 8 N -0.660 5.660 9 C 0.127 3.873 10 H 0.041 0.959 11 C 0.029 3.971 12 C -0.523 4.523 13 H 0.054 0.946 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.054 4.054 21 C -0.084 4.084 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.129 4.129 25 C -0.125 4.125 26 C -0.270 4.270 27 S 0.077 5.923 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.366 0.634 35 H 0.019 0.981 36 H 0.032 0.968 37 H 0.261 0.739 38 H 0.128 0.872 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.464 -17.973 -1.769 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.230 4.230 3 N -0.152 5.152 4 C -0.026 4.026 5 C 0.042 3.958 6 H 0.103 0.897 7 C -0.233 4.233 8 N -0.294 5.294 9 C 0.017 3.983 10 H 0.059 0.941 11 C -0.008 4.008 12 C -0.562 4.562 13 H 0.072 0.928 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.054 4.054 21 C -0.102 4.102 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.143 4.143 26 C -0.408 4.408 27 S 0.331 5.669 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.190 0.810 35 H 0.037 0.963 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.146 0.854 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.261 -18.649 -2.398 18.804 hybrid contribution 1.007 1.456 1.654 2.423 sum 0.746 -17.193 -0.744 17.225 Atomic orbital electron populations 1.20391 0.85507 1.02922 1.04608 1.27138 1.01687 0.90472 1.03668 1.66047 1.04478 1.30382 1.14301 1.20375 0.90130 0.93579 0.98561 1.20044 0.92455 0.89025 0.94271 0.89707 1.22476 1.02396 1.01557 0.96877 1.60341 1.22635 1.07484 1.38904 1.20671 0.93649 0.94995 0.88981 0.94108 1.19246 0.97097 0.87160 0.97305 1.21123 1.40382 1.02571 0.92091 0.92812 1.24958 0.95340 0.96822 0.96743 1.69964 1.40899 1.11192 1.30628 0.86650 0.77609 0.78790 0.85284 1.20796 1.21221 1.19890 1.20237 0.92449 0.95728 0.97020 1.21064 1.00073 0.96631 0.92459 1.21119 0.96292 1.01324 0.96180 1.20956 0.93333 1.02148 0.99170 1.20951 0.98517 1.00886 0.94339 1.21036 0.96520 1.00863 0.95921 1.26629 1.02528 0.95689 1.15985 1.83747 0.98904 1.14129 1.70158 0.90745 0.89499 0.89344 0.92926 0.91446 0.91901 0.81045 0.96277 0.94941 0.92936 0.85391 0.87054 0.87198 0.87022 0.86740 0.81156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.47 36.00 0.38 -0.34 16 2 C 0.05 0.65 7.39 -13.45 -0.10 0.55 16 3 N -0.44 -7.16 10.14 -8.06 -0.08 -7.25 16 4 C 0.11 1.65 5.80 -84.23 -0.49 1.16 16 5 C 0.16 2.53 2.73 -68.86 -0.19 2.34 16 6 H 0.08 1.34 7.65 -51.93 -0.40 0.94 16 7 C -0.17 -2.65 9.15 37.16 0.34 -2.31 16 8 N -0.66 -12.58 4.98 -102.17 -0.51 -13.09 16 9 C 0.13 2.56 2.00 -68.87 -0.14 2.43 16 10 H 0.04 0.82 7.13 -51.93 -0.37 0.45 16 11 C 0.03 0.73 4.54 -27.88 -0.13 0.60 16 12 C -0.52 -13.96 8.05 -34.44 -0.28 -14.24 16 13 H 0.05 1.38 7.67 -52.49 -0.40 0.98 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 16 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 20 C -0.05 -1.01 4.67 -104.63 -0.49 -1.50 16 21 C -0.08 -1.55 9.33 -39.59 -0.37 -1.91 16 22 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 16 23 C -0.14 -2.05 10.05 -39.59 -0.40 -2.44 16 24 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16 25 C -0.12 -2.12 9.67 -39.58 -0.38 -2.51 16 26 C -0.27 -3.52 11.14 29.12 0.32 -3.20 16 27 S 0.08 0.88 23.17 -107.50 -2.49 -1.61 16 28 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.06 7.61 -51.92 -0.40 0.66 16 33 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.37 7.82 6.99 -39.30 -0.27 7.55 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.13 2.50 7.71 -52.49 -0.40 2.09 16 39 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.11 1.81 8.04 -52.48 -0.42 1.39 16 43 H 0.17 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -30.01 373.18 -11.00 -41.01 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.45 Total: 9.07 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -2.81 Total: -24.54 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.15 Total: -45.78 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.49 Total: -1.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.01 -11.00 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271450950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.185 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds