Wall clock time and date at job start Tue Mar 31 2020 10:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38176 * 119.97066 * 2 1 4 4 C 1.38152 * 120.13579 * 179.97438 * 3 2 1 5 5 C 1.38884 * 120.07530 * 0.02562 * 4 3 2 6 6 N 1.40263 * 120.03112 * 179.97438 * 5 4 3 7 7 C 1.35064 * 127.39083 * 4.70794 * 6 5 4 8 8 N 1.30735 * 107.27802 * 179.84282 * 7 6 5 9 9 N 1.28421 * 110.64535 * 0.44403 * 8 7 6 10 10 N 1.28949 * 110.20192 * 359.72036 * 9 8 7 11 11 C 1.38682 * 119.93781 * 0.02562 * 5 4 3 12 12 C 1.38772 * 119.86833 * 359.97438 * 11 5 4 13 13 N 1.39949 * 120.03704 * 179.97438 * 12 11 5 14 14 C 1.34768 * 120.00109 * 24.83101 * 13 12 11 15 15 O 1.21585 * 120.00301 * 5.61556 * 14 13 12 16 16 N 1.34785 * 120.00019 * 185.61759 * 14 13 12 17 17 C 1.46495 * 119.99797 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47061 * 180.02562 * 17 16 14 19 19 C 1.50696 * 109.47476 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99991 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00441 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99715 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00170 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47216 * 90.00211 * 23 21 19 25 25 H 1.48503 * 109.47107 * 209.99904 * 23 21 19 26 26 H 1.48503 * 109.47160 * 329.99981 * 23 21 19 27 27 H 1.09003 * 109.47494 * 89.99808 * 1 2 3 28 28 H 1.09003 * 109.47249 * 209.99626 * 1 2 3 29 29 H 1.09004 * 109.47123 * 329.99237 * 1 2 3 30 30 H 1.07998 * 119.93218 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.96227 * 179.73157 * 4 3 2 32 32 H 1.08001 * 126.35950 * 359.97438 * 7 6 5 33 33 H 1.08001 * 120.06482 * 179.97438 * 11 5 4 34 34 H 0.97003 * 119.99510 * 204.82431 * 13 12 11 35 35 H 0.96994 * 119.99961 * 0.02562 * 16 14 13 36 36 H 1.08995 * 109.47395 * 300.00201 * 17 16 14 37 37 H 1.09004 * 109.47154 * 60.00232 * 17 16 14 38 38 H 1.08995 * 109.47068 * 300.00264 * 18 17 16 39 39 H 1.09004 * 109.47059 * 60.00037 * 18 17 16 40 40 H 0.96999 * 119.99863 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1970 0.0000 4 6 3.5787 1.2010 0.0005 5 6 4.2782 0.0011 0.0005 6 7 5.6808 0.0063 0.0005 7 6 6.4971 1.0787 0.0886 8 7 7.7263 0.6349 0.0551 9 7 7.7430 -0.6443 -0.0574 10 7 6.5387 -1.1035 -0.0974 11 6 3.5885 -1.2020 -0.0005 12 6 2.2008 -1.2032 -0.0011 13 7 1.5012 -2.4153 -0.0027 14 6 2.0816 -3.5289 0.4864 15 8 3.1713 -3.4618 1.0215 16 7 1.4541 -4.7172 0.3823 17 6 2.0853 -5.9278 0.9135 18 6 1.1710 -7.1297 0.6672 19 6 1.8199 -8.3749 1.2142 20 1 2.7875 -8.3151 1.6903 21 6 1.1780 -9.5905 1.1078 22 7 -0.0005 -9.6633 0.5285 23 14 1.9821 -11.1340 1.7864 24 1 1.5743 -11.3233 3.2017 25 1 1.5524 -12.3088 0.9862 26 1 3.4589 -10.9970 1.7109 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5140 30 1 1.6556 2.1314 -0.0004 31 1 4.1154 2.1382 -0.0039 32 1 6.1911 2.1110 0.1733 33 1 4.1304 -2.1363 -0.0010 34 1 0.5986 -2.4538 -0.3558 35 1 0.5850 -4.7709 -0.0450 36 1 3.0399 -6.0894 0.4130 37 1 2.2517 -5.8109 1.9844 38 1 0.2162 -6.9683 1.1674 39 1 1.0050 -7.2465 -0.4037 40 1 -0.4519 -10.5185 0.4534 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272936541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:49 Heat of formation + Delta-G solvation = 93.179319 kcal Electronic energy + Delta-G solvation = -24913.893124 eV Core-core repulsion = 21151.651938 eV Total energy + Delta-G solvation = -3762.241186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -44.29622 -41.97092 -40.18823 -37.25143 -36.63420 -35.34471 -34.86330 -33.45460 -32.76711 -31.92962 -30.47126 -28.17661 -26.83225 -25.28220 -25.00989 -23.56364 -22.84981 -22.41119 -21.84295 -20.12380 -19.44297 -18.48301 -17.73359 -17.69977 -17.07820 -16.87797 -16.55484 -16.40122 -16.26121 -15.79573 -15.38895 -15.16068 -14.82369 -14.60443 -14.32634 -14.23196 -13.81552 -13.71322 -13.25974 -13.24585 -13.00360 -12.79597 -12.55663 -12.49859 -12.49020 -12.25772 -12.14444 -11.69432 -11.67194 -11.55140 -11.45097 -11.15354 -10.62838 -10.17333 -9.66600 -9.08014 -8.26913 -6.36755 -0.70098 0.19829 0.54974 0.76430 1.17564 1.39491 1.40408 1.46770 1.53468 1.92350 2.38762 2.65247 2.96592 3.08287 3.21292 3.35652 3.77355 3.81827 3.90651 3.99195 4.18795 4.29230 4.34534 4.42839 4.45764 4.61291 4.77491 4.81997 4.89079 5.01489 5.15079 5.19229 5.24765 5.31445 5.36137 5.44434 5.50304 5.55667 5.75018 5.86886 5.90048 6.13807 6.75860 6.89011 7.25230 7.32515 7.35947 8.84923 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.014941 B = 0.002700 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.535788 B =10367.080190 C =12134.588614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.100 4.100 3 C -0.063 4.063 4 C -0.120 4.120 5 C 0.116 3.884 6 N -0.322 5.322 7 C 0.244 3.756 8 N -0.359 5.359 9 N -0.067 5.067 10 N -0.115 5.115 11 C -0.149 4.149 12 C 0.172 3.828 13 N -0.666 5.666 14 C 0.694 3.306 15 O -0.614 6.614 16 N -0.722 5.722 17 C 0.159 3.841 18 C 0.025 3.975 19 C -0.548 4.548 20 H 0.056 0.944 21 C 0.010 3.990 22 N -0.925 5.925 23 Si 0.962 3.038 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.269 1.269 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.190 0.810 31 H 0.183 0.817 32 H 0.304 0.696 33 H 0.122 0.878 34 H 0.427 0.573 35 H 0.411 0.589 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.013 0.987 39 H 0.010 0.990 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 30.975 -3.639 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.104 4.104 3 C -0.082 4.082 4 C -0.141 4.141 5 C 0.024 3.976 6 N -0.112 5.112 7 C -0.051 4.051 8 N -0.209 5.209 9 N -0.062 5.062 10 N -0.100 5.100 11 C -0.173 4.173 12 C 0.075 3.925 13 N -0.315 5.315 14 C 0.395 3.605 15 O -0.494 6.494 16 N -0.376 5.376 17 C 0.035 3.965 18 C -0.012 4.012 19 C -0.587 4.587 20 H 0.075 0.925 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.787 3.213 24 H -0.197 1.197 25 H -0.204 1.204 26 H -0.193 1.193 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.207 0.793 31 H 0.200 0.800 32 H 0.318 0.682 33 H 0.139 0.861 34 H 0.267 0.733 35 H 0.247 0.753 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.029 0.971 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.889 29.754 -3.296 29.949 hybrid contribution -0.914 -1.360 0.035 1.639 sum -1.803 28.394 -3.261 28.637 Atomic orbital electron populations 1.20904 0.87917 1.04532 1.04172 1.20188 0.98325 0.90420 1.01438 1.21232 0.92192 0.98456 0.96314 1.21317 0.95296 0.95330 1.02195 1.17674 0.76208 0.96235 1.07482 1.49158 1.07763 1.05992 1.48259 1.28564 0.84454 0.98156 0.93951 1.74354 1.20964 1.02956 1.22631 1.78089 1.13135 1.04121 1.10890 1.82829 0.95206 1.09793 1.22221 1.21041 0.94398 0.98220 1.03599 1.17332 0.89648 0.85444 1.00081 1.42450 1.19442 1.05508 1.64102 1.16193 0.83884 0.81194 0.79271 1.90909 1.22364 1.85746 1.50360 1.45218 1.23867 1.05602 1.62948 1.21140 0.95972 0.82324 0.97063 1.19117 0.94540 0.91078 0.96486 1.21452 1.04971 0.93449 1.38789 0.92529 1.25819 0.95426 1.02379 0.95300 1.70041 1.15387 1.26701 1.44286 0.85485 0.78889 0.78407 0.78526 1.19670 1.20380 1.19346 0.88804 0.91980 0.88182 0.79287 0.79959 0.68153 0.86060 0.73312 0.75274 0.93902 0.93534 0.96876 0.97116 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.44 71.23 0.67 -0.02 16 2 C -0.10 -1.19 5.90 -19.72 -0.12 -1.31 16 3 C -0.06 -0.40 9.69 22.23 0.22 -0.19 16 4 C -0.12 -1.04 9.49 22.40 0.21 -0.83 16 5 C 0.12 2.39 6.69 38.05 0.25 2.64 16 6 N -0.32 -7.59 3.85 -191.12 -0.74 -8.33 16 7 C 0.24 3.85 12.15 180.19 2.19 6.04 16 8 N -0.36 -9.09 12.15 -60.14 -0.73 -9.82 16 9 N -0.07 -2.21 13.39 37.02 0.50 -1.72 16 10 N -0.11 -3.89 13.34 37.02 0.49 -3.39 16 11 C -0.15 -4.18 8.37 22.50 0.19 -3.99 16 12 C 0.17 3.76 6.41 38.13 0.24 4.00 16 13 N -0.67 -15.25 4.98 -317.23 -1.58 -16.83 16 14 C 0.69 23.33 8.37 179.05 1.50 24.83 16 15 O -0.61 -26.40 13.51 -3.98 -0.05 -26.46 16 16 N -0.72 -24.29 5.56 -478.55 -2.66 -26.95 16 17 C 0.16 6.86 5.61 86.38 0.48 7.34 16 18 C 0.03 1.26 5.09 29.85 0.15 1.41 16 19 C -0.55 -30.72 9.11 25.60 0.23 -30.48 16 20 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 21 C 0.01 0.55 5.46 84.65 0.46 1.01 16 22 N -0.92 -53.78 13.29 21.45 0.28 -53.50 16 23 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.06 0.48 6.98 -2.39 -0.02 0.47 16 29 H 0.10 0.17 8.08 -2.39 -0.02 0.15 16 30 H 0.19 -0.48 8.06 -2.91 -0.02 -0.50 16 31 H 0.18 -0.26 6.90 -2.91 -0.02 -0.28 16 32 H 0.30 -0.11 7.21 -2.91 -0.02 -0.13 16 33 H 0.12 4.64 5.50 -2.91 -0.02 4.63 16 34 H 0.43 6.34 7.42 -92.71 -0.69 5.66 16 35 H 0.41 11.17 8.49 -92.71 -0.79 10.38 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -85.96 348.10 3.87 -82.09 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -0.36 Total: 8.50 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.69 Total: 10.46 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -4.43 Total: -120.54 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.05 Total: -26.46 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -85.96 3.87 -82.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272936541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.268 kcal (2) G-P(sol) polarization free energy of solvation -85.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds