Wall clock time and date at job start Tue Mar 31 2020 11:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35237 * 126.07262 * 2 1 4 4 C 1.40403 * 107.86945 * 180.10600 * 3 2 1 5 5 N 1.40185 * 125.97448 * 179.88910 * 4 3 2 6 6 C 1.34772 * 119.99985 * 359.71035 * 5 4 3 7 7 O 1.21595 * 119.99991 * 0.02562 * 6 5 4 8 8 N 1.34783 * 120.00212 * 179.97438 * 6 5 4 9 9 C 1.39989 * 119.99947 * 175.32477 * 8 6 5 10 10 C 1.39228 * 120.86786 * 214.63204 * 9 8 6 11 11 N 1.32271 * 119.01451 * 179.71849 * 10 9 8 12 12 C 1.31797 * 120.89026 * 0.57695 * 11 10 9 13 13 C 1.50700 * 119.03914 * 179.72543 * 12 11 10 14 14 N 1.31789 * 121.92283 * 359.69577 * 12 11 10 15 15 C 1.32276 * 120.89590 * 0.02562 * 14 12 11 16 16 N 1.31211 * 108.05343 * 359.62140 * 4 3 2 17 17 N 1.34970 * 126.06582 * 179.68378 * 2 1 3 18 18 C 1.46491 * 125.97794 * 359.97438 * 17 2 1 19 19 C 1.50704 * 109.46779 * 270.01440 * 18 17 2 20 20 H 1.07993 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99969 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00006 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99840 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46952 * 89.99945 * 23 21 19 25 25 H 1.48496 * 109.47130 * 210.00122 * 23 21 19 26 26 H 1.48499 * 109.47010 * 329.99912 * 23 21 19 27 27 H 1.09004 * 109.47079 * 270.31959 * 1 2 3 28 28 H 1.08998 * 109.47112 * 30.31566 * 1 2 3 29 29 H 1.08998 * 109.47619 * 150.32255 * 1 2 3 30 30 H 1.08004 * 126.06783 * 359.97119 * 3 2 1 31 31 H 0.96998 * 120.00014 * 179.71330 * 5 4 3 32 32 H 0.96993 * 119.99577 * 355.05775 * 8 6 5 33 33 H 1.08000 * 120.49181 * 0.02562 * 10 9 8 34 34 H 1.09005 * 109.46806 * 269.97815 * 13 12 11 35 35 H 1.09001 * 109.46940 * 29.97388 * 13 12 11 36 36 H 1.08996 * 109.47262 * 149.97407 * 13 12 11 37 37 H 1.07997 * 120.49397 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47580 * 30.01435 * 18 17 2 39 39 H 1.09005 * 109.47274 * 150.01941 * 18 17 2 40 40 H 0.96998 * 119.99656 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6545 -0.0025 5 7 4.7737 1.4749 -0.0055 6 6 4.6370 2.8157 -0.0121 7 8 3.5277 3.3137 -0.0150 8 7 5.7298 3.6046 -0.0145 9 6 5.5902 4.9935 -0.1201 10 6 6.5295 5.7554 -0.8098 11 7 6.3585 7.0645 -0.8917 12 6 5.3234 7.6486 -0.3221 13 6 5.1728 9.1437 -0.4363 14 7 4.4159 6.9633 0.3440 15 6 4.5118 5.6498 0.4671 16 7 3.6336 -0.6576 0.0043 17 7 2.3015 -1.0910 0.0060 18 6 1.8499 -2.4845 0.0142 19 6 1.6953 -2.9540 1.4379 20 1 1.9113 -2.2815 2.2548 21 6 1.2779 -4.2422 1.6975 22 7 1.1424 -4.6518 2.9399 23 14 0.9048 -5.4058 0.2846 24 1 2.1381 -6.1450 -0.0867 25 1 -0.1441 -6.3707 0.7016 26 1 0.4239 -4.6266 -0.8845 27 1 -0.3633 0.0057 1.0277 28 1 -0.3633 0.8871 -0.5187 29 1 -0.3634 -0.8928 -0.5088 30 1 1.9720 2.1211 -0.0004 31 1 5.6586 1.0777 -0.0028 32 1 6.6127 3.2102 0.0610 33 1 7.3824 5.2840 -1.2754 34 1 5.6797 9.6248 0.4003 35 1 5.6153 9.4829 -1.3729 36 1 4.1147 9.4047 -0.4188 37 1 3.7646 5.0946 1.0147 38 1 0.8912 -2.5589 -0.4990 39 1 2.5845 -3.1076 -0.4960 40 1 0.8484 -5.5579 3.1225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275741313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:52 Heat of formation + Delta-G solvation = 112.197286 kcal Electronic energy + Delta-G solvation = -24903.828000 eV Core-core repulsion = 21142.411495 eV Total energy + Delta-G solvation = -3761.416505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70309 -40.88036 -39.84947 -35.97856 -35.06580 -33.95845 -33.43329 -32.30999 -31.48301 -31.13468 -28.18517 -27.03416 -26.48268 -25.07591 -23.68250 -22.58428 -21.75711 -20.32193 -19.83880 -18.61607 -17.69610 -17.28245 -17.16932 -16.90656 -16.08831 -15.78377 -15.32438 -15.24680 -14.73076 -14.48795 -14.02395 -13.89649 -13.52284 -13.30310 -13.01224 -12.66204 -12.64330 -12.48887 -12.40539 -12.00381 -11.74259 -11.67401 -11.43892 -11.20010 -11.09611 -10.84676 -10.66111 -10.29609 -10.05768 -9.91656 -9.65530 -9.48733 -8.82366 -8.76465 -8.10306 -7.57843 -6.30275 -4.33737 0.53649 0.81104 1.93437 2.37596 2.82043 3.11908 3.17076 3.18370 3.27810 3.44625 3.60740 3.73210 3.90731 3.95841 4.17546 4.22373 4.59357 4.86605 4.97884 5.22175 5.24748 5.26794 5.43295 5.51907 5.60967 5.72367 5.80665 5.96243 6.00411 6.22330 6.24535 6.32129 6.38236 6.50340 6.63664 6.70795 6.80738 7.23819 7.27008 7.58321 7.77393 7.82960 8.17628 8.26194 8.46058 8.74697 9.24595 10.82139 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.036402 B = 0.002327 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.010975 B =12031.374664 C =12324.348798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.097 3.903 3 C -0.285 4.285 4 C 0.281 3.719 5 N -0.634 5.634 6 C 0.714 3.286 7 O -0.548 6.548 8 N -0.673 5.673 9 C 0.061 3.939 10 C 0.127 3.873 11 N -0.502 5.502 12 C 0.291 3.709 13 C -0.082 4.082 14 N -0.499 5.499 15 C 0.156 3.844 16 N -0.316 5.316 17 N -0.315 5.315 18 C 0.231 3.769 19 C -0.542 4.542 20 H 0.081 0.919 21 C 0.079 3.921 22 N -0.885 5.885 23 Si 0.874 3.126 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.264 1.264 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.163 0.837 31 H 0.410 0.590 32 H 0.413 0.587 33 H 0.171 0.829 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.186 0.814 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.175 20.004 -8.033 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 C -0.316 4.316 4 C 0.028 3.972 5 N -0.283 5.283 6 C 0.414 3.586 7 O -0.422 6.422 8 N -0.323 5.323 9 C -0.040 4.040 10 C -0.043 4.043 11 N -0.216 5.216 12 C 0.024 3.976 13 C -0.141 4.141 14 N -0.213 5.213 15 C -0.013 4.013 16 N -0.146 5.146 17 N -0.097 5.097 18 C 0.112 3.888 19 C -0.580 4.580 20 H 0.099 0.901 21 C -0.125 4.125 22 N -0.522 5.522 23 Si 0.700 3.300 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.189 1.189 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.180 0.820 31 H 0.246 0.754 32 H 0.249 0.751 33 H 0.188 0.812 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.203 0.797 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.668 20.032 -8.004 23.248 hybrid contribution 0.541 -1.714 -0.396 1.841 sum 9.209 18.318 -8.401 22.157 Atomic orbital electron populations 1.20367 0.87672 1.02804 1.03569 1.21068 0.94994 0.86875 1.00415 1.21233 0.89511 0.99950 1.20922 1.18582 0.86313 0.89247 1.03097 1.41226 1.08126 1.03197 1.75731 1.15551 0.84224 0.80734 0.78084 1.90896 1.23164 1.73029 1.55127 1.42250 1.09395 1.03532 1.77122 1.19274 1.00361 0.83751 1.00608 1.23064 0.98594 0.89445 0.93157 1.68224 1.22673 1.10452 1.20213 1.23256 0.85852 0.98274 0.90260 1.20526 1.03976 0.85869 1.03688 1.68369 1.27999 1.07768 1.17152 1.23707 0.95772 0.89256 0.92538 1.77262 0.99600 1.08257 1.29523 1.48528 1.01059 1.07112 1.53029 1.20025 0.95348 0.73607 0.99787 1.21159 1.47504 0.99042 0.90268 0.90096 1.24813 0.94454 0.97490 0.95788 1.69869 1.45569 1.18359 1.18429 0.86889 0.78998 0.81516 0.82587 1.19638 1.20512 1.18888 0.89963 0.90571 0.91059 0.81956 0.75430 0.75070 0.81243 0.89742 0.89754 0.89598 0.79693 0.93124 0.93626 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 10.11 36.00 0.36 -1.01 16 2 C 0.10 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -5.48 9.52 -39.84 -0.38 -5.86 16 4 C 0.28 5.27 8.11 -154.37 -1.25 4.02 16 5 N -0.63 -8.59 5.45 -15.51 -0.08 -8.67 16 6 C 0.71 9.15 8.40 -86.92 -0.73 8.42 16 7 O -0.55 -8.76 10.97 5.28 0.06 -8.70 16 8 N -0.67 -5.79 5.37 -14.04 -0.08 -5.87 16 9 C 0.06 0.60 6.34 -83.40 -0.53 0.07 16 10 C 0.13 1.09 11.26 -16.99 -0.19 0.90 16 11 N -0.50 -5.17 10.32 -10.58 -0.11 -5.28 16 12 C 0.29 3.09 7.64 -157.20 -1.20 1.89 16 13 C -0.08 -0.58 10.31 36.01 0.37 -0.21 16 14 N -0.50 -6.06 10.32 -10.58 -0.11 -6.17 16 15 C 0.16 1.87 9.98 -16.99 -0.17 1.70 16 16 N -0.32 -6.81 12.59 31.44 0.40 -6.42 16 17 N -0.32 -7.03 3.59 -58.33 -0.21 -7.24 16 18 C 0.23 5.41 5.06 -5.20 -0.03 5.38 16 19 C -0.54 -14.83 9.94 -34.44 -0.34 -15.18 16 20 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 21 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 22 N -0.89 -25.91 13.96 55.43 0.77 -25.13 16 23 Si 0.87 19.78 27.47 -169.99 -4.67 15.11 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.11 7.07 -51.93 -0.37 0.74 16 30 H 0.16 3.03 5.91 -52.48 -0.31 2.72 16 31 H 0.41 4.15 8.84 -40.82 -0.36 3.79 16 32 H 0.41 1.95 8.84 -40.82 -0.36 1.59 16 33 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.19 2.39 6.32 -52.49 -0.33 2.06 16 38 H 0.05 1.10 6.10 -51.93 -0.32 0.79 16 39 H 0.05 1.06 7.57 -51.93 -0.39 0.67 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -34.65 345.66 -8.14 -42.78 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.57 Total: 6.83 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -4.75 Total: 3.55 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: 0.58 Total: -64.78 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.06 Total: -8.70 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.67 Total: 15.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.65 -8.14 -42.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275741313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.982 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds