Wall clock time and date at job start Tue Mar 31 2020 11:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35237 * 126.07262 * 2 1 4 4 C 1.40403 * 107.86945 * 180.10600 * 3 2 1 5 5 N 1.40185 * 125.97448 * 179.88910 * 4 3 2 6 6 C 1.34772 * 119.99985 * 359.71035 * 5 4 3 7 7 O 1.21595 * 119.99991 * 0.02562 * 6 5 4 8 8 N 1.34783 * 120.00212 * 179.97438 * 6 5 4 9 9 C 1.39989 * 119.99947 * 175.32477 * 8 6 5 10 10 C 1.39228 * 120.86786 * 214.63204 * 9 8 6 11 11 N 1.32271 * 119.01451 * 179.71849 * 10 9 8 12 12 C 1.31797 * 120.89026 * 0.57695 * 11 10 9 13 13 C 1.50700 * 119.03914 * 179.72543 * 12 11 10 14 14 N 1.31789 * 121.92283 * 359.69577 * 12 11 10 15 15 C 1.32276 * 120.89590 * 0.02562 * 14 12 11 16 16 N 1.31211 * 108.05343 * 359.62140 * 4 3 2 17 17 N 1.34970 * 126.06582 * 179.68378 * 2 1 3 18 18 C 1.46491 * 125.97794 * 359.97438 * 17 2 1 19 19 C 1.50704 * 109.46779 * 270.01440 * 18 17 2 20 20 H 1.07993 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99969 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00006 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99840 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46952 * 89.99945 * 23 21 19 25 25 H 1.48496 * 109.47130 * 210.00122 * 23 21 19 26 26 H 1.48499 * 109.47010 * 329.99912 * 23 21 19 27 27 H 1.09004 * 109.47079 * 270.31959 * 1 2 3 28 28 H 1.08998 * 109.47112 * 30.31566 * 1 2 3 29 29 H 1.08998 * 109.47619 * 150.32255 * 1 2 3 30 30 H 1.08004 * 126.06783 * 359.97119 * 3 2 1 31 31 H 0.96998 * 120.00014 * 179.71330 * 5 4 3 32 32 H 0.96993 * 119.99577 * 355.05775 * 8 6 5 33 33 H 1.08000 * 120.49181 * 0.02562 * 10 9 8 34 34 H 1.09005 * 109.46806 * 269.97815 * 13 12 11 35 35 H 1.09001 * 109.46940 * 29.97388 * 13 12 11 36 36 H 1.08996 * 109.47262 * 149.97407 * 13 12 11 37 37 H 1.07997 * 120.49397 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47580 * 30.01435 * 18 17 2 39 39 H 1.09005 * 109.47274 * 150.01941 * 18 17 2 40 40 H 0.96998 * 119.99656 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6545 -0.0025 5 7 4.7737 1.4749 -0.0055 6 6 4.6370 2.8157 -0.0121 7 8 3.5277 3.3137 -0.0150 8 7 5.7298 3.6046 -0.0145 9 6 5.5902 4.9935 -0.1201 10 6 6.5295 5.7554 -0.8098 11 7 6.3585 7.0645 -0.8917 12 6 5.3234 7.6486 -0.3221 13 6 5.1728 9.1437 -0.4363 14 7 4.4159 6.9633 0.3440 15 6 4.5118 5.6498 0.4671 16 7 3.6336 -0.6576 0.0043 17 7 2.3015 -1.0910 0.0060 18 6 1.8499 -2.4845 0.0142 19 6 1.6953 -2.9540 1.4379 20 1 1.9113 -2.2815 2.2548 21 6 1.2779 -4.2422 1.6975 22 7 1.1424 -4.6518 2.9399 23 14 0.9048 -5.4058 0.2846 24 1 2.1381 -6.1450 -0.0867 25 1 -0.1441 -6.3707 0.7016 26 1 0.4239 -4.6266 -0.8845 27 1 -0.3633 0.0057 1.0277 28 1 -0.3633 0.8871 -0.5187 29 1 -0.3634 -0.8928 -0.5088 30 1 1.9720 2.1211 -0.0004 31 1 5.6586 1.0777 -0.0028 32 1 6.6127 3.2102 0.0610 33 1 7.3824 5.2840 -1.2754 34 1 5.6797 9.6248 0.4003 35 1 5.6153 9.4829 -1.3729 36 1 4.1147 9.4047 -0.4188 37 1 3.7646 5.0946 1.0147 38 1 0.8912 -2.5589 -0.4990 39 1 2.5845 -3.1076 -0.4960 40 1 0.8484 -5.5579 3.1225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275741313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:51 Heat of formation + Delta-G solvation = 87.032524 kcal Electronic energy + Delta-G solvation = -24904.919226 eV Core-core repulsion = 21142.411495 eV Total energy + Delta-G solvation = -3762.507731 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.66414 -42.16051 -40.97581 -36.99468 -36.28262 -35.29634 -34.76441 -33.50968 -32.80956 -32.60182 -29.31708 -28.44685 -27.89908 -25.89125 -24.93842 -24.00095 -22.85118 -21.58182 -21.20553 -19.74875 -19.23174 -18.65689 -18.22613 -17.72260 -17.47827 -16.91073 -16.70341 -16.37956 -16.10114 -15.72078 -15.54488 -14.92324 -14.71822 -14.54621 -14.24052 -13.87849 -13.79042 -13.69671 -13.55592 -13.27865 -13.16629 -12.90568 -12.59170 -12.52386 -12.32639 -12.07254 -11.94159 -11.82796 -11.64240 -11.49823 -11.27822 -10.89473 -10.30548 -9.70552 -9.53097 -9.08428 -8.39935 -6.50956 -0.26191 0.01389 0.81278 0.98338 1.36033 1.37889 1.47371 1.52307 1.90447 2.22008 2.26914 2.69199 2.85418 2.92793 3.05955 3.16506 3.47003 3.76124 3.85279 4.08971 4.17984 4.37774 4.51733 4.62417 4.67715 4.71782 4.76462 4.80045 4.81228 4.91325 4.98230 5.10067 5.14187 5.21536 5.24078 5.47542 5.66105 5.83616 5.92518 5.98881 6.35449 6.50463 6.54244 6.98711 7.04029 7.12841 7.15419 8.76578 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.036402 B = 0.002327 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.010975 B =12031.374664 C =12324.348798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.090 3.910 3 C -0.295 4.295 4 C 0.292 3.708 5 N -0.624 5.624 6 C 0.716 3.284 7 O -0.580 6.580 8 N -0.647 5.647 9 C 0.054 3.946 10 C 0.143 3.857 11 N -0.511 5.511 12 C 0.281 3.719 13 C -0.081 4.081 14 N -0.523 5.523 15 C 0.136 3.864 16 N -0.351 5.351 17 N -0.342 5.342 18 C 0.241 3.759 19 C -0.549 4.549 20 H 0.024 0.976 21 C 0.020 3.980 22 N -0.937 5.937 23 Si 0.951 3.049 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.233 1.233 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.168 0.832 31 H 0.427 0.573 32 H 0.435 0.565 33 H 0.212 0.788 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.168 0.832 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.164 20.708 -10.533 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C -0.326 4.326 4 C 0.037 3.963 5 N -0.275 5.275 6 C 0.415 3.585 7 O -0.456 6.456 8 N -0.298 5.298 9 C -0.046 4.046 10 C -0.027 4.027 11 N -0.225 5.225 12 C 0.014 3.986 13 C -0.139 4.139 14 N -0.238 5.238 15 C -0.032 4.032 16 N -0.182 5.182 17 N -0.124 5.124 18 C 0.121 3.879 19 C -0.587 4.587 20 H 0.042 0.958 21 C -0.179 4.179 22 N -0.576 5.576 23 Si 0.772 3.228 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.156 1.156 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.096 0.904 30 H 0.185 0.815 31 H 0.266 0.734 32 H 0.275 0.725 33 H 0.228 0.772 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.185 0.815 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.719 20.784 -10.505 25.235 hybrid contribution 0.329 -1.721 0.473 1.815 sum 10.048 19.063 -10.032 23.770 Atomic orbital electron populations 1.20509 0.85297 1.04692 1.03826 1.21734 0.96683 0.86387 0.99142 1.21423 0.89931 1.00031 1.21228 1.18847 0.87800 0.88914 1.00753 1.41143 1.07618 1.03151 1.75607 1.15648 0.84704 0.80466 0.77640 1.90880 1.24896 1.73463 1.56329 1.41885 1.09313 1.02771 1.75858 1.19261 1.00339 0.83891 1.01109 1.23693 0.98693 0.88813 0.91456 1.68354 1.22559 1.11162 1.20470 1.23898 0.85506 0.99646 0.89503 1.20649 1.04522 0.83839 1.04913 1.68362 1.29117 1.07979 1.18293 1.23567 0.96515 0.89671 0.93409 1.77172 0.99768 1.09631 1.31585 1.48428 1.01765 1.07088 1.55138 1.19796 0.96491 0.74626 0.97000 1.21246 1.47653 0.98650 0.91176 0.95756 1.25839 0.93796 0.99347 0.98954 1.70033 1.46968 1.19203 1.21367 0.85679 0.79013 0.78789 0.79323 1.19032 1.20102 1.15623 0.90396 0.87437 0.90397 0.81451 0.73432 0.72466 0.77186 0.88315 0.88481 0.89348 0.81476 0.90811 0.93235 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.65 10.11 71.23 0.72 -1.93 16 2 C 0.09 3.57 6.92 41.38 0.29 3.86 16 3 C -0.30 -11.33 9.52 22.10 0.21 -11.12 16 4 C 0.29 10.90 8.11 133.32 1.08 11.98 16 5 N -0.62 -16.27 5.45 -321.23 -1.75 -18.02 16 6 C 0.72 17.56 8.40 179.05 1.50 19.06 16 7 O -0.58 -18.43 10.97 -4.02 -0.04 -18.47 16 8 N -0.65 -9.81 5.37 -316.57 -1.70 -11.51 16 9 C 0.05 0.98 6.34 38.31 0.24 1.23 16 10 C 0.14 2.05 11.26 84.87 0.96 3.01 16 11 N -0.51 -9.40 10.32 -187.39 -1.93 -11.34 16 12 C 0.28 5.63 7.64 138.75 1.06 6.69 16 13 C -0.08 -1.02 10.31 71.24 0.73 -0.29 16 14 N -0.52 -12.60 10.32 -187.39 -1.93 -14.53 16 15 C 0.14 3.26 9.98 84.86 0.85 4.11 16 16 N -0.35 -15.25 12.59 -54.44 -0.69 -15.93 16 17 N -0.34 -15.33 3.59 -338.46 -1.22 -16.55 16 18 C 0.24 11.15 5.06 85.64 0.43 11.59 16 19 C -0.55 -30.95 9.94 25.60 0.25 -30.69 16 20 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 21 C 0.02 1.13 5.47 84.66 0.46 1.59 16 22 N -0.94 -56.48 13.96 21.45 0.30 -56.18 16 23 Si 0.95 40.14 27.47 68.60 1.88 42.03 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.23 -8.64 6.54 99.48 0.65 -7.99 16 27 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 28 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.08 2.30 7.07 -2.39 -0.02 2.28 16 30 H 0.17 6.24 5.91 -2.91 -0.02 6.23 16 31 H 0.43 7.97 8.84 -92.71 -0.82 7.15 16 32 H 0.43 2.79 8.84 -92.71 -0.82 1.97 16 33 H 0.21 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.17 4.53 6.32 -2.91 -0.02 4.51 16 38 H 0.07 3.06 6.10 -2.39 -0.01 3.04 16 39 H 0.05 2.24 7.57 -2.38 -0.02 2.22 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -78.96 345.66 1.13 -77.83 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -0.57 Total: 23.58 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 8.79 Total: 19.09 kcal Atomic # 7 Polarization: -135.13 SS G_CDS: -8.92 Total: -144.05 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.04 Total: -18.47 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 1.88 Total: 42.03 kcal Total: -78.96 1.13 -77.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275741313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.860 kcal (2) G-P(sol) polarization free energy of solvation -78.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds