Wall clock time and date at job start Tue Mar 31 2020 11:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 N 1.46502 * 109.47205 * 179.97438 * 3 2 1 5 5 C 1.36941 * 119.99889 * 269.51577 * 4 3 2 6 6 H 1.08001 * 119.99874 * 326.08801 * 5 4 3 7 7 C 1.38810 * 120.00113 * 146.09412 * 5 4 3 8 8 N 1.31624 * 119.99861 * 336.58483 * 7 5 4 9 9 Si 1.86800 * 120.00142 * 156.58614 * 7 5 4 10 10 H 1.48501 * 109.46842 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47145 * 120.00073 * 9 7 5 12 12 H 1.48504 * 109.46958 * 239.99977 * 9 7 5 13 13 C 1.46497 * 119.99899 * 89.51041 * 4 3 2 14 14 C 1.50703 * 109.46821 * 90.00394 * 13 4 3 15 15 N 1.28796 * 124.75785 * 90.01671 * 14 13 4 16 16 C 1.32521 * 117.12825 * 179.97438 * 15 14 13 17 17 C 1.48344 * 122.96471 * 180.02562 * 16 15 14 18 18 C 1.39363 * 120.12112 * 179.70245 * 17 16 15 19 19 C 1.38017 * 119.87030 * 179.71787 * 18 17 16 20 20 C 1.38325 * 120.12560 * 0.55242 * 19 18 17 21 21 C 1.50702 * 119.87553 * 179.74279 * 20 19 18 22 22 C 1.38330 * 120.24932 * 359.72236 * 20 19 18 23 23 C 1.38012 * 120.12327 * 359.97438 * 22 20 19 24 24 C 1.34835 * 114.06995 * 359.97438 * 16 15 14 25 25 S 1.70917 * 124.75443 * 269.97185 * 14 13 4 26 26 H 1.09002 * 109.47309 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47458 * 300.00385 * 1 2 3 28 28 H 1.09003 * 109.47054 * 59.99815 * 1 2 3 29 29 H 1.08996 * 109.47191 * 240.00351 * 2 1 3 30 30 H 1.08990 * 109.47036 * 119.99909 * 2 1 3 31 31 H 1.09005 * 109.47401 * 60.00091 * 3 2 1 32 32 H 1.09003 * 109.47376 * 299.99988 * 3 2 1 33 33 H 0.96995 * 119.99904 * 179.97438 * 8 7 5 34 34 H 1.08992 * 109.47440 * 330.00532 * 13 4 3 35 35 H 1.08997 * 109.46822 * 209.99979 * 13 4 3 36 36 H 1.07995 * 120.06853 * 359.97438 * 18 17 16 37 37 H 1.08004 * 119.93481 * 180.27289 * 19 18 17 38 38 H 1.08992 * 109.47118 * 269.97500 * 21 20 19 39 39 H 1.09004 * 109.46882 * 29.97934 * 21 20 19 40 40 H 1.09005 * 109.46840 * 149.97706 * 21 20 19 41 41 H 1.08001 * 119.94064 * 179.97438 * 22 20 19 42 42 H 1.07992 * 120.06402 * 180.02562 * 23 22 20 43 43 H 1.08002 * 126.05762 * 180.26814 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.4528 1.1868 6 1 3.7865 1.9819 2.0379 7 6 5.4002 0.7832 1.2953 8 7 5.6789 -0.2096 0.4772 9 14 6.6344 1.2908 2.6025 10 1 6.0852 2.4253 3.3877 11 1 6.8972 0.1432 3.5074 12 1 7.9020 1.7080 1.9510 13 6 4.2380 1.4316 -1.2677 14 6 4.4893 2.8486 -1.7149 15 7 5.5281 3.5435 -1.4036 16 6 5.5951 4.7776 -1.8818 17 6 6.7318 5.6898 -1.6054 18 6 6.7442 6.9750 -2.1442 19 6 7.8016 7.8214 -1.8789 20 6 8.8531 7.3923 -1.0893 21 6 10.0076 8.3192 -0.8080 22 6 8.8488 6.1157 -0.5565 23 6 7.7937 5.2629 -0.8101 24 6 4.5393 5.1306 -2.6426 25 16 3.4363 3.7585 -2.7072 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 6.5253 -0.6772 0.5528 34 1 3.6493 0.9113 -2.0231 35 1 5.1903 0.9189 -1.1325 36 1 5.9260 7.3095 -2.7647 37 1 7.8101 8.8191 -2.2924 38 1 10.7708 8.1922 -1.5757 39 1 9.6550 9.3506 -0.8132 40 1 10.4319 8.0851 0.1684 41 1 9.6726 5.7857 0.0590 42 1 7.7911 4.2667 -0.3933 43 1 4.3972 6.0841 -3.1295 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286297600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:10 Heat of formation + Delta-G solvation = 73.950847 kcal Electronic energy + Delta-G solvation = -23499.872331 eV Core-core repulsion = 20250.797799 eV Total energy + Delta-G solvation = -3249.074532 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.73292 -38.35331 -36.24683 -33.28042 -32.80107 -31.10138 -30.88653 -29.68635 -27.05304 -26.66515 -25.61407 -23.52558 -22.25354 -22.05401 -20.99366 -20.02846 -18.88559 -17.69869 -16.65169 -16.04137 -15.03099 -14.98100 -14.71963 -14.50191 -14.22510 -14.10643 -13.85294 -13.57194 -13.33780 -13.03041 -13.01270 -12.89296 -12.37422 -12.26412 -11.89293 -11.60292 -11.43187 -11.39531 -11.02894 -10.89869 -10.77885 -10.75739 -10.63637 -10.40038 -10.12876 -10.03989 -9.75053 -9.09285 -8.86782 -8.80627 -8.77359 -8.55697 -7.64568 -6.79520 -5.90109 -3.39957 0.90936 1.56268 1.74510 2.01141 2.39817 3.36704 3.41136 3.46355 3.49744 4.16804 4.46531 4.58409 4.85795 4.95728 5.12102 5.27038 5.30514 5.37746 5.46578 5.50465 5.51068 5.65997 5.70957 5.77460 5.79812 5.87531 5.99014 6.07362 6.14216 6.20675 6.25822 6.37503 6.45220 6.51169 6.55655 6.63494 6.68266 6.79607 6.89497 6.98489 7.12824 7.19040 7.44263 7.76449 8.35905 8.55662 9.03631 9.69296 10.21197 11.12260 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.004449 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.896891 B = 6291.427777 C = 8017.228111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.145 3.855 4 N -0.565 5.565 5 C -0.256 4.256 6 H 0.063 0.937 7 C 0.024 3.976 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.200 3.800 14 C 0.097 3.903 15 N -0.464 5.464 16 C 0.111 3.889 17 C -0.014 4.014 18 C -0.104 4.104 19 C -0.125 4.125 20 C -0.091 4.091 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.080 4.080 24 C -0.280 4.280 25 S 0.059 5.941 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.257 0.743 34 H 0.051 0.949 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.122 0.878 42 H 0.136 0.864 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 11.494 -6.561 13.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.019 3.981 4 N -0.283 5.283 5 C -0.386 4.386 6 H 0.081 0.919 7 C -0.177 4.177 8 N -0.521 5.521 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.210 1.210 13 C 0.069 3.931 14 C -0.186 4.186 15 N -0.178 5.178 16 C -0.021 4.021 17 C -0.017 4.017 18 C -0.123 4.123 19 C -0.143 4.143 20 C -0.091 4.091 21 C -0.169 4.169 22 C -0.142 4.142 23 C -0.099 4.099 24 C -0.420 4.420 25 S 0.315 5.685 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.140 0.860 42 H 0.154 0.846 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.006 10.887 -6.692 12.780 hybrid contribution 1.269 0.953 0.798 1.776 sum 1.262 11.840 -5.895 13.286 Atomic orbital electron populations 1.21755 0.97583 1.00458 1.00772 1.22040 0.93191 1.00246 1.02360 1.21022 0.84491 0.93960 0.98619 1.43817 0.99639 1.83162 1.01664 1.19038 1.03326 1.26370 0.89872 0.91916 1.24988 1.00103 0.94608 0.98021 1.69910 1.23607 1.18922 1.39698 0.86330 0.81866 0.78130 0.81073 1.20151 1.21778 1.21008 1.19986 1.02266 0.84028 0.86803 1.29549 0.90185 1.04160 0.94669 1.66187 1.24032 1.04537 1.23016 1.18887 0.94571 0.91276 0.97358 1.18150 0.92869 0.92360 0.98330 1.21073 0.98561 0.92859 0.99794 1.20826 0.94139 0.99525 0.99856 1.19953 0.96290 0.95040 0.97827 1.20774 0.96053 0.98109 1.01930 1.21017 0.98816 0.93474 1.00871 1.21414 0.92188 1.00380 0.95875 1.26634 0.99499 1.04216 1.11643 1.83791 1.27964 1.06847 1.49858 0.93717 0.93369 0.93611 0.92873 0.91581 0.93584 0.94744 0.93267 0.93052 0.85067 0.86046 0.86137 0.91353 0.91749 0.91638 0.86011 0.84616 0.81778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.14 -2.59 6.26 -26.73 -0.17 -2.75 16 3 C 0.15 2.94 5.67 -4.04 -0.02 2.91 16 4 N -0.56 -13.48 2.44 -174.61 -0.43 -13.91 16 5 C -0.26 -6.84 9.48 -15.06 -0.14 -6.98 16 6 H 0.06 1.71 7.93 -52.49 -0.42 1.29 16 7 C 0.02 0.65 4.94 -17.43 -0.09 0.56 16 8 N -0.88 -24.32 11.34 55.49 0.63 -23.69 16 9 Si 0.90 21.86 29.61 -169.99 -5.03 16.83 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 13 C 0.20 4.59 5.87 -5.19 -0.03 4.56 16 14 C 0.10 2.08 6.95 -13.55 -0.09 1.98 16 15 N -0.46 -10.38 9.92 -8.43 -0.08 -10.46 16 16 C 0.11 2.14 6.65 -84.62 -0.56 1.58 16 17 C -0.01 -0.25 5.88 -104.90 -0.62 -0.87 16 18 C -0.10 -1.46 9.49 -39.24 -0.37 -1.83 16 19 C -0.13 -1.56 9.68 -39.63 -0.38 -1.94 16 20 C -0.09 -1.15 5.88 -104.55 -0.62 -1.76 16 21 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 22 C -0.12 -1.80 9.68 -39.63 -0.38 -2.18 16 23 C -0.08 -1.40 9.64 -39.24 -0.38 -1.78 16 24 C -0.28 -4.70 10.63 29.53 0.31 -4.39 16 25 S 0.06 1.02 23.16 -107.50 -2.49 -1.47 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 32 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.05 1.07 8.07 -51.93 -0.42 0.66 16 35 H 0.13 3.45 5.33 -51.93 -0.28 3.17 16 36 H 0.12 1.44 6.66 -52.49 -0.35 1.09 16 37 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 40 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 41 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.14 2.67 7.70 -52.49 -0.40 2.27 16 43 H 0.16 2.20 6.90 -52.49 -0.36 1.84 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -28.96 372.54 -11.02 -39.99 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.42 Total: 2.46 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.81 Total: -15.37 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.12 Total: -48.05 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.96 -11.02 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286297600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.937 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds