Wall clock time and date at job start Tue Mar 31 2020 11:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 N 1.46502 * 109.47205 * 179.97438 * 3 2 1 5 5 C 1.36941 * 119.99889 * 269.51577 * 4 3 2 6 6 H 1.08001 * 119.99874 * 326.08801 * 5 4 3 7 7 C 1.38810 * 120.00113 * 146.09412 * 5 4 3 8 8 N 1.31624 * 119.99861 * 336.58483 * 7 5 4 9 9 Si 1.86800 * 120.00142 * 156.58614 * 7 5 4 10 10 H 1.48501 * 109.46842 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47145 * 120.00073 * 9 7 5 12 12 H 1.48504 * 109.46958 * 239.99977 * 9 7 5 13 13 C 1.46497 * 119.99899 * 89.51041 * 4 3 2 14 14 C 1.50703 * 109.46821 * 90.00394 * 13 4 3 15 15 N 1.28796 * 124.75785 * 90.01671 * 14 13 4 16 16 C 1.32521 * 117.12825 * 179.97438 * 15 14 13 17 17 C 1.48344 * 122.96471 * 180.02562 * 16 15 14 18 18 C 1.39363 * 120.12112 * 179.70245 * 17 16 15 19 19 C 1.38017 * 119.87030 * 179.71787 * 18 17 16 20 20 C 1.38325 * 120.12560 * 0.55242 * 19 18 17 21 21 C 1.50702 * 119.87553 * 179.74279 * 20 19 18 22 22 C 1.38330 * 120.24932 * 359.72236 * 20 19 18 23 23 C 1.38012 * 120.12327 * 359.97438 * 22 20 19 24 24 C 1.34835 * 114.06995 * 359.97438 * 16 15 14 25 25 S 1.70917 * 124.75443 * 269.97185 * 14 13 4 26 26 H 1.09002 * 109.47309 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47458 * 300.00385 * 1 2 3 28 28 H 1.09003 * 109.47054 * 59.99815 * 1 2 3 29 29 H 1.08996 * 109.47191 * 240.00351 * 2 1 3 30 30 H 1.08990 * 109.47036 * 119.99909 * 2 1 3 31 31 H 1.09005 * 109.47401 * 60.00091 * 3 2 1 32 32 H 1.09003 * 109.47376 * 299.99988 * 3 2 1 33 33 H 0.96995 * 119.99904 * 179.97438 * 8 7 5 34 34 H 1.08992 * 109.47440 * 330.00532 * 13 4 3 35 35 H 1.08997 * 109.46822 * 209.99979 * 13 4 3 36 36 H 1.07995 * 120.06853 * 359.97438 * 18 17 16 37 37 H 1.08004 * 119.93481 * 180.27289 * 19 18 17 38 38 H 1.08992 * 109.47118 * 269.97500 * 21 20 19 39 39 H 1.09004 * 109.46882 * 29.97934 * 21 20 19 40 40 H 1.09005 * 109.46840 * 149.97706 * 21 20 19 41 41 H 1.08001 * 119.94064 * 179.97438 * 22 20 19 42 42 H 1.07992 * 120.06402 * 180.02562 * 23 22 20 43 43 H 1.08002 * 126.05762 * 180.26814 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.4528 1.1868 6 1 3.7865 1.9819 2.0379 7 6 5.4002 0.7832 1.2953 8 7 5.6789 -0.2096 0.4772 9 14 6.6344 1.2908 2.6025 10 1 6.0852 2.4253 3.3877 11 1 6.8972 0.1432 3.5074 12 1 7.9020 1.7080 1.9510 13 6 4.2380 1.4316 -1.2677 14 6 4.4893 2.8486 -1.7149 15 7 5.5281 3.5435 -1.4036 16 6 5.5951 4.7776 -1.8818 17 6 6.7318 5.6898 -1.6054 18 6 6.7442 6.9750 -2.1442 19 6 7.8016 7.8214 -1.8789 20 6 8.8531 7.3923 -1.0893 21 6 10.0076 8.3192 -0.8080 22 6 8.8488 6.1157 -0.5565 23 6 7.7937 5.2629 -0.8101 24 6 4.5393 5.1306 -2.6426 25 16 3.4363 3.7585 -2.7072 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 6.5253 -0.6772 0.5528 34 1 3.6493 0.9113 -2.0231 35 1 5.1903 0.9189 -1.1325 36 1 5.9260 7.3095 -2.7647 37 1 7.8101 8.8191 -2.2924 38 1 10.7708 8.1922 -1.5757 39 1 9.6550 9.3506 -0.8132 40 1 10.4319 8.0851 0.1684 41 1 9.6726 5.7857 0.0590 42 1 7.7911 4.2667 -0.3933 43 1 4.3972 6.0841 -3.1295 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286297600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:09 Heat of formation + Delta-G solvation = 60.261148 kcal Electronic energy + Delta-G solvation = -23500.465961 eV Core-core repulsion = 20250.797799 eV Total energy + Delta-G solvation = -3249.668162 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.05551 -39.63482 -37.97953 -34.71231 -34.22273 -32.79737 -32.03620 -31.09032 -28.60749 -27.78307 -27.35748 -24.97773 -23.63721 -23.35373 -22.33239 -21.57427 -20.35365 -19.27360 -18.39379 -17.28666 -16.88240 -16.18083 -16.11194 -15.92712 -15.82977 -15.59264 -15.24566 -14.80136 -14.59913 -14.42834 -14.34869 -14.19190 -13.84412 -13.29615 -13.13779 -13.02502 -12.93198 -12.80020 -12.66928 -12.54686 -12.25880 -12.22182 -12.06761 -11.95624 -11.86250 -11.82502 -11.34795 -10.60278 -10.39555 -10.33805 -10.23204 -9.91170 -8.90933 -8.73148 -7.92953 -5.46142 -0.38001 0.41941 0.45303 0.58752 0.90083 1.35958 1.42423 1.48532 2.03168 2.45899 2.95497 3.15541 3.31056 3.67793 3.86460 3.96338 4.06702 4.13162 4.26511 4.28597 4.37598 4.44352 4.49883 4.60240 4.67513 4.75717 4.79960 4.83360 4.86149 4.89720 4.93574 5.10640 5.15896 5.18895 5.28046 5.28936 5.45975 5.50664 5.51745 5.58092 5.63402 5.65506 5.73341 6.04943 6.37736 7.05673 7.07856 7.75560 8.23905 9.05828 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.004449 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.896891 B = 6291.427777 C = 8017.228111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.144 3.856 4 N -0.580 5.580 5 C -0.260 4.260 6 H 0.050 0.950 7 C -0.014 4.014 8 N -0.903 5.903 9 Si 0.940 3.060 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.294 1.294 13 C 0.207 3.793 14 C 0.054 3.946 15 N -0.501 5.501 16 C 0.080 3.920 17 C -0.043 4.043 18 C -0.099 4.099 19 C -0.118 4.118 20 C -0.085 4.085 21 C -0.110 4.110 22 C -0.134 4.134 23 C -0.111 4.111 24 C -0.261 4.261 25 S 0.133 5.867 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.253 0.747 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.149 0.851 37 H 0.161 0.839 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.130 0.870 42 H 0.094 0.906 43 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 15.156 -8.334 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.019 3.981 4 N -0.299 5.299 5 C -0.390 4.390 6 H 0.068 0.932 7 C -0.213 4.213 8 N -0.547 5.547 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.221 1.221 13 C 0.077 3.923 14 C -0.227 4.227 15 N -0.216 5.216 16 C -0.050 4.050 17 C -0.046 4.046 18 C -0.118 4.118 19 C -0.136 4.136 20 C -0.086 4.086 21 C -0.167 4.167 22 C -0.152 4.152 23 C -0.131 4.131 24 C -0.401 4.401 25 S 0.389 5.611 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.167 0.833 37 H 0.179 0.821 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.148 0.852 42 H 0.112 0.888 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.026 14.552 -8.463 16.865 hybrid contribution 1.584 -0.017 1.216 1.997 sum 0.558 14.535 -7.246 16.251 Atomic orbital electron populations 1.21664 0.94020 1.01826 1.02043 1.21899 0.96225 0.98601 1.00287 1.21141 0.82604 0.95053 0.99326 1.43928 1.00994 1.83944 1.01083 1.19069 1.03721 1.25462 0.90765 0.93235 1.25427 1.01282 0.94998 0.99585 1.70007 1.23601 1.19984 1.41097 0.85654 0.80043 0.77803 0.79609 1.20216 1.21083 1.22097 1.19613 1.00536 0.85351 0.86835 1.28906 0.92182 1.04130 0.97517 1.66147 1.25241 1.06316 1.23861 1.19249 0.96411 0.90821 0.98545 1.18319 0.92521 0.93815 0.99921 1.21375 0.99886 0.91303 0.99263 1.21313 0.92875 1.00793 0.98608 1.20396 0.97452 0.94339 0.96390 1.20853 0.94964 0.98247 1.02619 1.21180 0.98238 0.94332 1.01431 1.21243 0.94429 0.99490 0.97913 1.27181 0.97953 1.05378 1.09570 1.83329 1.25434 1.05296 1.47034 0.92357 0.92660 0.91722 0.93833 0.94787 0.93972 0.92664 0.93772 0.91774 0.88996 0.83294 0.82142 0.89933 0.89589 0.91251 0.85171 0.88778 0.77591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.91 71.98 0.71 -3.10 16 2 C -0.13 -4.90 6.26 30.59 0.19 -4.71 16 3 C 0.14 5.85 5.67 86.38 0.49 6.34 16 4 N -0.58 -28.71 2.44 -706.34 -1.72 -30.43 16 5 C -0.26 -14.54 9.48 84.03 0.80 -13.75 16 6 H 0.05 2.84 7.93 -2.91 -0.02 2.82 16 7 C -0.01 -0.82 4.94 84.86 0.42 -0.40 16 8 N -0.90 -52.92 11.34 21.65 0.25 -52.67 16 9 Si 0.94 47.38 29.61 68.60 2.03 49.41 16 10 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.29 -15.13 7.11 99.48 0.71 -14.43 16 13 C 0.21 9.91 5.87 85.63 0.50 10.41 16 14 C 0.05 2.37 6.95 88.55 0.62 2.99 16 15 N -0.50 -23.29 9.92 -180.57 -1.79 -25.08 16 16 C 0.08 3.10 6.65 40.95 0.27 3.38 16 17 C -0.04 -1.50 5.88 -20.04 -0.12 -1.61 16 18 C -0.10 -2.51 9.49 22.49 0.21 -2.29 16 19 C -0.12 -2.47 9.68 22.24 0.22 -2.25 16 20 C -0.09 -1.94 5.88 -19.82 -0.12 -2.05 16 21 C -0.11 -1.63 10.01 71.24 0.71 -0.92 16 22 C -0.13 -3.91 9.68 22.24 0.22 -3.70 16 23 C -0.11 -4.13 9.64 22.49 0.22 -3.91 16 24 C -0.26 -8.08 10.63 67.04 0.71 -7.37 16 25 S 0.13 4.32 23.16 -56.49 -1.31 3.01 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.72 8.03 -2.38 -0.02 1.70 16 32 H 0.06 1.98 8.08 -2.39 -0.02 1.97 16 33 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.06 2.77 8.07 -2.39 -0.02 2.75 16 35 H 0.09 5.17 5.33 -2.39 -0.01 5.16 16 36 H 0.15 2.81 6.66 -2.91 -0.02 2.80 16 37 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 40 H 0.07 0.99 8.08 -2.38 -0.02 0.97 16 41 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.09 4.16 7.70 -2.91 -0.02 4.14 16 43 H 0.21 4.46 6.90 -2.91 -0.02 4.44 16 Total: -1.00 -68.61 372.54 4.50 -64.11 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.99 Total: 14.59 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 6.05 Total: -22.94 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -3.27 Total: -108.18 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.31 Total: 3.01 kcal Total: -68.61 4.50 -64.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286297600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.370 kcal (2) G-P(sol) polarization free energy of solvation -68.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds