Wall clock time and date at job start Tue Mar 31 2020 10:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38326 * 119.87502 * 2 1 4 4 C 1.38001 * 120.12413 * 180.02562 * 3 2 1 5 5 C 1.39375 * 119.87585 * 359.97438 * 4 3 2 6 6 C 1.48341 * 120.12450 * 179.97438 * 5 4 3 7 7 C 1.34836 * 122.96306 * 4.97555 * 6 5 4 8 8 S 1.76174 * 107.87508 * 179.97438 * 7 6 5 9 9 C 1.70915 * 90.43654 * 359.97438 * 8 7 6 10 10 C 1.50705 * 124.75546 * 180.02562 * 9 8 7 11 11 N 1.46898 * 109.46881 * 270.02420 * 10 9 8 12 12 C 1.46896 * 111.00178 * 66.04709 * 11 10 9 13 13 C 1.46903 * 110.99849 * 190.00038 * 11 10 9 14 14 H 1.09003 * 109.46808 * 300.00462 * 13 11 10 15 15 C 1.53000 * 109.47120 * 60.00056 * 13 11 10 16 16 C 1.50694 * 109.47066 * 180.02562 * 13 11 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 N 1.28801 * 110.49084 * 0.26167 * 9 8 7 25 25 C 1.39368 * 119.74739 * 0.25458 * 5 4 3 26 26 C 1.38011 * 119.87835 * 359.46775 * 25 5 4 27 27 H 1.09005 * 109.47102 * 89.99827 * 1 2 3 28 28 H 1.08997 * 109.47035 * 209.99998 * 1 2 3 29 29 H 1.09002 * 109.47081 * 329.99990 * 1 2 3 30 30 H 1.08004 * 119.93928 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.06613 * 180.02562 * 4 3 2 32 32 H 1.07995 * 126.06323 * 0.02562 * 7 6 5 33 33 H 1.09005 * 109.46912 * 150.02640 * 10 9 8 34 34 H 1.08999 * 109.47231 * 30.02339 * 10 9 8 35 35 H 1.09000 * 109.47187 * 183.95237 * 12 11 10 36 36 H 1.08996 * 109.47272 * 303.95406 * 12 11 10 37 37 H 1.09005 * 109.47145 * 63.94894 * 12 11 10 38 38 H 1.09007 * 109.47356 * 300.00024 * 15 13 11 39 39 H 1.09000 * 109.47156 * 59.99749 * 15 13 11 40 40 H 1.08997 * 109.47359 * 180.02562 * 15 13 11 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.08006 * 120.05864 * 179.72534 * 25 5 4 43 43 H 1.07996 * 119.93965 * 180.25454 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1994 0.0000 4 6 3.5761 1.2054 -0.0005 5 6 4.2756 -0.0001 -0.0005 6 6 5.7590 0.0000 -0.0017 7 6 6.4927 1.1270 0.0954 8 16 8.1937 0.6701 0.0552 9 6 7.7613 -0.9774 -0.0861 10 6 8.7418 -2.1176 -0.1840 11 7 9.0607 -2.3693 -1.5957 12 6 9.7852 -1.2340 -2.1823 13 6 9.8226 -3.6159 -1.7492 14 1 10.7541 -3.5438 -1.1878 15 6 8.9956 -4.7878 -1.2166 16 6 10.1311 -3.8397 -3.2071 17 1 9.7946 -3.1275 -3.9460 18 6 10.8422 -4.9545 -3.5980 19 7 11.2516 -5.8222 -2.6984 20 14 11.2241 -5.2323 -5.4053 21 1 11.9944 -6.4925 -5.5605 22 1 9.9550 -5.3300 -6.1701 23 1 12.0272 -4.0951 -5.9221 24 7 6.4799 -1.1074 -0.1022 25 6 3.5761 -1.2055 -0.0054 26 6 2.1960 -1.1995 0.0010 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6530 2.1330 -0.0004 31 1 4.1131 2.1425 -0.0001 32 1 6.1062 2.1316 0.1831 33 1 8.3022 -3.0135 0.2545 34 1 9.6539 -1.8597 0.3541 35 1 9.9472 -1.4161 -3.2447 36 1 9.1991 -0.3239 -2.0548 37 1 10.7471 -1.1195 -1.6825 38 1 8.7727 -4.6257 -0.1620 39 1 8.0640 -4.8598 -1.7779 40 1 9.5610 -5.7127 -1.3300 41 1 11.7515 -6.6066 -2.9735 42 1 4.1131 -2.1426 -0.0099 43 1 1.6529 -2.1330 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286477055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:32 Heat of formation + Delta-G solvation = 73.981823 kcal Electronic energy + Delta-G solvation = -23043.448905 eV Core-core repulsion = 19794.375716 eV Total energy + Delta-G solvation = -3249.073189 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14229 -38.76864 -37.03444 -33.55061 -32.77072 -31.17248 -30.49724 -29.15226 -27.70423 -27.00028 -25.11218 -24.18624 -22.93447 -22.46134 -21.15488 -19.71921 -19.26997 -17.88956 -16.38617 -16.31005 -15.50121 -15.25703 -15.02318 -14.77160 -14.49971 -14.10656 -13.98152 -13.67282 -13.50593 -13.43930 -13.19264 -12.51593 -12.42531 -12.27320 -12.12501 -11.89549 -11.79119 -11.24537 -11.17568 -11.01812 -10.99498 -10.77419 -10.66879 -10.18319 -10.13248 -9.96185 -9.43323 -9.37812 -9.20959 -9.02491 -8.91403 -8.44224 -7.99255 -7.29157 -6.03288 -4.07873 0.54642 1.32412 1.34939 1.49044 1.86908 2.97180 3.31856 3.36128 3.39469 3.85888 4.09252 4.40012 4.65274 4.73732 4.86815 4.96218 5.04962 5.10808 5.19883 5.29155 5.36217 5.37152 5.40314 5.59842 5.64866 5.73574 5.89883 5.96596 6.02698 6.07552 6.12816 6.29608 6.40430 6.49092 6.53722 6.70126 6.81904 6.88833 7.03774 7.08864 7.45093 7.63699 7.79949 7.94264 8.12908 8.26280 8.51195 8.97159 9.56933 11.03520 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.002961 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.348543 B = 9452.869967 C =10359.782673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.101 4.101 5 C -0.021 4.021 6 C 0.110 3.890 7 C -0.268 4.268 8 S 0.115 5.885 9 C 0.094 3.906 10 C 0.118 3.882 11 N -0.527 5.527 12 C 0.029 3.971 13 C 0.215 3.785 14 H 0.002 0.998 15 C -0.135 4.135 16 C -0.504 4.504 17 H 0.063 0.937 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.288 1.288 22 H -0.276 1.276 23 H -0.278 1.278 24 N -0.455 5.455 25 C -0.079 4.079 26 C -0.123 4.123 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.173 0.827 33 H 0.108 0.892 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.016 0.984 38 H 0.009 0.991 39 H 0.037 0.963 40 H 0.087 0.913 41 H 0.261 0.739 42 H 0.136 0.864 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.788 14.383 8.200 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.120 4.120 5 C -0.023 4.023 6 C -0.021 4.021 7 C -0.407 4.407 8 S 0.372 5.628 9 C -0.187 4.187 10 C -0.014 4.014 11 N -0.253 5.253 12 C -0.120 4.120 13 C 0.110 3.890 14 H 0.019 0.981 15 C -0.193 4.193 16 C -0.543 4.543 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.726 3.274 21 H -0.213 1.213 22 H -0.202 1.202 23 H -0.203 1.203 24 N -0.169 5.169 25 C -0.098 4.098 26 C -0.141 4.141 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.191 0.809 33 H 0.125 0.875 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.028 0.972 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.154 0.846 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.325 14.147 7.957 21.649 hybrid contribution 0.139 -0.002 -0.602 0.617 sum -14.186 14.145 7.356 21.341 Atomic orbital electron populations 1.20801 0.91270 1.02682 1.02328 1.20005 0.96062 0.93249 0.99313 1.20859 0.93678 0.97537 1.02127 1.21080 0.94128 0.96936 0.99899 1.18073 0.88591 0.93780 1.01889 1.18802 0.94014 0.87063 1.02243 1.26912 0.95640 1.03468 1.14718 1.83969 1.06650 1.04790 1.67406 1.27181 0.93785 0.97710 1.00026 1.20813 0.93325 0.93735 0.93483 1.62138 1.47743 1.04700 1.10675 1.22387 0.95011 0.92579 1.02029 1.19290 0.89621 0.83227 0.96848 0.98073 1.21878 0.99922 1.02198 0.95265 1.21077 1.33951 1.07565 0.91703 0.91860 1.24918 0.95715 0.95828 0.97668 1.69878 1.38034 1.12274 1.33002 0.86563 0.78409 0.77361 0.85091 1.21332 1.20181 1.20343 1.66116 1.04583 1.30431 1.15751 1.21358 0.93743 0.98251 0.96463 1.21027 0.94012 0.97618 1.01430 0.91145 0.91520 0.91646 0.85941 0.85942 0.80918 0.87453 0.93544 0.90004 0.93870 0.96531 0.97205 0.94384 0.89467 0.92864 0.84638 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.09 -0.86 5.88 -104.55 -0.62 -1.47 16 3 C -0.12 -1.22 9.68 -39.64 -0.38 -1.60 16 4 C -0.10 -1.13 9.48 -39.25 -0.37 -1.50 16 5 C -0.02 -0.28 5.88 -104.90 -0.62 -0.90 16 6 C 0.11 1.69 6.64 -84.62 -0.56 1.12 16 7 C -0.27 -3.50 10.62 29.53 0.31 -3.18 16 8 S 0.12 1.58 21.52 -107.50 -2.31 -0.73 16 9 C 0.09 1.59 6.16 -13.55 -0.08 1.51 16 10 C 0.12 2.19 5.35 -4.97 -0.03 2.16 16 11 N -0.53 -11.43 4.61 -237.73 -1.10 -12.52 16 12 C 0.03 0.57 9.01 60.06 0.54 1.11 16 13 C 0.22 5.37 2.06 -68.87 -0.14 5.23 16 14 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 15 C -0.13 -3.27 8.76 37.16 0.33 -2.94 16 16 C -0.50 -13.68 7.93 -34.44 -0.27 -13.96 16 17 H 0.06 1.72 6.39 -52.49 -0.34 1.38 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 19 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 20 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 N -0.46 -8.05 9.93 -8.42 -0.08 -8.14 16 25 C -0.08 -1.07 9.64 -39.24 -0.38 -1.45 16 26 C -0.12 -1.38 9.68 -39.63 -0.38 -1.76 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 31 H 0.12 1.10 6.69 -52.49 -0.35 0.75 16 32 H 0.17 1.69 6.92 -52.49 -0.36 1.33 16 33 H 0.11 2.04 5.83 -51.93 -0.30 1.74 16 34 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 35 H 0.08 1.72 6.23 -51.93 -0.32 1.40 16 36 H 0.04 0.76 5.79 -51.93 -0.30 0.46 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.14 1.97 7.71 -52.48 -0.40 1.57 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -29.76 359.46 -10.81 -40.57 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.95 Total: 0.23 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -2.39 Total: -16.53 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.55 Total: -45.17 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.31 Total: -0.73 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.76 -10.81 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286477055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.552 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds