Wall clock time and date at job start Tue Mar 31 2020 10:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38326 * 119.87502 * 2 1 4 4 C 1.38001 * 120.12413 * 180.02562 * 3 2 1 5 5 C 1.39375 * 119.87585 * 359.97438 * 4 3 2 6 6 C 1.48341 * 120.12450 * 179.97438 * 5 4 3 7 7 C 1.34836 * 122.96306 * 4.97555 * 6 5 4 8 8 S 1.76174 * 107.87508 * 179.97438 * 7 6 5 9 9 C 1.70915 * 90.43654 * 359.97438 * 8 7 6 10 10 C 1.50705 * 124.75546 * 180.02562 * 9 8 7 11 11 N 1.46898 * 109.46881 * 270.02420 * 10 9 8 12 12 C 1.46896 * 111.00178 * 66.04709 * 11 10 9 13 13 C 1.46903 * 110.99849 * 190.00038 * 11 10 9 14 14 H 1.09003 * 109.46808 * 300.00462 * 13 11 10 15 15 C 1.53000 * 109.47120 * 60.00056 * 13 11 10 16 16 C 1.50694 * 109.47066 * 180.02562 * 13 11 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 N 1.28801 * 110.49084 * 0.26167 * 9 8 7 25 25 C 1.39368 * 119.74739 * 0.25458 * 5 4 3 26 26 C 1.38011 * 119.87835 * 359.46775 * 25 5 4 27 27 H 1.09005 * 109.47102 * 89.99827 * 1 2 3 28 28 H 1.08997 * 109.47035 * 209.99998 * 1 2 3 29 29 H 1.09002 * 109.47081 * 329.99990 * 1 2 3 30 30 H 1.08004 * 119.93928 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.06613 * 180.02562 * 4 3 2 32 32 H 1.07995 * 126.06323 * 0.02562 * 7 6 5 33 33 H 1.09005 * 109.46912 * 150.02640 * 10 9 8 34 34 H 1.08999 * 109.47231 * 30.02339 * 10 9 8 35 35 H 1.09000 * 109.47187 * 183.95237 * 12 11 10 36 36 H 1.08996 * 109.47272 * 303.95406 * 12 11 10 37 37 H 1.09005 * 109.47145 * 63.94894 * 12 11 10 38 38 H 1.09007 * 109.47356 * 300.00024 * 15 13 11 39 39 H 1.09000 * 109.47156 * 59.99749 * 15 13 11 40 40 H 1.08997 * 109.47359 * 180.02562 * 15 13 11 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.08006 * 120.05864 * 179.72534 * 25 5 4 43 43 H 1.07996 * 119.93965 * 180.25454 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1994 0.0000 4 6 3.5761 1.2054 -0.0005 5 6 4.2756 -0.0001 -0.0005 6 6 5.7590 0.0000 -0.0017 7 6 6.4927 1.1270 0.0954 8 16 8.1937 0.6701 0.0552 9 6 7.7613 -0.9774 -0.0861 10 6 8.7418 -2.1176 -0.1840 11 7 9.0607 -2.3693 -1.5957 12 6 9.7852 -1.2340 -2.1823 13 6 9.8226 -3.6159 -1.7492 14 1 10.7541 -3.5438 -1.1878 15 6 8.9956 -4.7878 -1.2166 16 6 10.1311 -3.8397 -3.2071 17 1 9.7946 -3.1275 -3.9460 18 6 10.8422 -4.9545 -3.5980 19 7 11.2516 -5.8222 -2.6984 20 14 11.2241 -5.2323 -5.4053 21 1 11.9944 -6.4925 -5.5605 22 1 9.9550 -5.3300 -6.1701 23 1 12.0272 -4.0951 -5.9221 24 7 6.4799 -1.1074 -0.1022 25 6 3.5761 -1.2055 -0.0054 26 6 2.1960 -1.1995 0.0010 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6530 2.1330 -0.0004 31 1 4.1131 2.1425 -0.0001 32 1 6.1062 2.1316 0.1831 33 1 8.3022 -3.0135 0.2545 34 1 9.6539 -1.8597 0.3541 35 1 9.9472 -1.4161 -3.2447 36 1 9.1991 -0.3239 -2.0548 37 1 10.7471 -1.1195 -1.6825 38 1 8.7727 -4.6257 -0.1620 39 1 8.0640 -4.8598 -1.7779 40 1 9.5610 -5.7127 -1.3300 41 1 11.7515 -6.6066 -2.9735 42 1 4.1131 -2.1426 -0.0099 43 1 1.6529 -2.1330 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286477055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:31 Heat of formation + Delta-G solvation = 57.480513 kcal Electronic energy + Delta-G solvation = -23044.164455 eV Core-core repulsion = 19794.375716 eV Total energy + Delta-G solvation = -3249.788739 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20628 -39.76567 -38.69574 -35.07294 -34.12305 -32.08185 -31.77463 -30.87736 -29.11431 -27.82828 -26.98678 -25.78259 -24.17324 -23.34973 -22.31619 -21.31869 -20.53352 -19.03975 -18.30595 -17.35938 -17.20247 -16.26776 -16.13024 -16.07154 -15.86071 -15.61756 -15.06078 -14.98521 -14.54319 -14.45263 -14.30990 -14.16420 -13.79709 -13.59979 -13.03819 -13.00455 -12.98146 -12.82852 -12.71168 -12.63107 -12.47575 -12.13883 -12.07934 -12.00855 -11.86903 -11.81458 -10.96488 -10.60059 -10.55589 -10.40925 -10.31940 -9.87250 -9.07840 -8.91583 -8.12218 -6.23835 -0.49639 0.31122 0.37838 0.49350 0.72664 1.42354 1.44387 1.51704 1.89062 2.42000 2.90825 2.99985 3.16015 3.39487 3.78093 3.90152 4.05526 4.10651 4.15206 4.28736 4.30790 4.44285 4.51144 4.53790 4.62107 4.66732 4.82160 4.88055 4.89154 4.91138 4.98780 5.01694 5.03506 5.18067 5.20800 5.29465 5.45394 5.51113 5.61765 5.68928 5.69313 5.73050 6.07199 6.21627 6.30350 6.60921 6.80699 6.88054 7.44696 8.93654 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.002961 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.348543 B = 9452.869967 C =10359.782673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.122 4.122 4 C -0.101 4.101 5 C -0.047 4.047 6 C 0.085 3.915 7 C -0.250 4.250 8 S 0.166 5.834 9 C 0.055 3.945 10 C 0.123 3.877 11 N -0.540 5.540 12 C 0.035 3.965 13 C 0.221 3.779 14 H -0.025 1.025 15 C -0.122 4.122 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.959 3.041 21 H -0.283 1.283 22 H -0.275 1.275 23 H -0.270 1.270 24 N -0.483 5.483 25 C -0.105 4.105 26 C -0.132 4.132 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.212 0.788 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.020 0.980 38 H 0.031 0.969 39 H 0.025 0.975 40 H 0.064 0.936 41 H 0.263 0.737 42 H 0.109 0.891 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.399 17.357 8.088 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.140 4.140 4 C -0.120 4.120 5 C -0.049 4.049 6 C -0.046 4.046 7 C -0.389 4.389 8 S 0.422 5.578 9 C -0.224 4.224 10 C -0.008 4.008 11 N -0.266 5.266 12 C -0.114 4.114 13 C 0.115 3.885 14 H -0.007 1.007 15 C -0.180 4.180 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.185 4.185 19 N -0.558 5.558 20 Si 0.785 3.215 21 H -0.208 1.208 22 H -0.201 1.201 23 H -0.195 1.195 24 N -0.197 5.197 25 C -0.125 4.125 26 C -0.150 4.150 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.173 0.827 31 H 0.165 0.835 32 H 0.228 0.772 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.050 0.950 39 H 0.044 0.956 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.128 0.872 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.942 17.130 7.853 24.683 hybrid contribution 0.533 -0.827 -0.496 1.102 sum -15.409 16.303 7.356 23.608 Atomic orbital electron populations 1.20864 0.88948 1.03912 1.03205 1.20408 0.97787 0.92755 0.97666 1.21283 0.93381 0.98757 1.00569 1.21370 0.94867 0.96737 0.98981 1.18247 0.88077 0.94852 1.03750 1.19107 0.94935 0.87093 1.03454 1.27391 0.95067 1.04524 1.11920 1.83678 1.06640 1.01398 1.66078 1.26785 0.93573 0.99276 1.02814 1.20661 0.94218 0.94426 0.91501 1.62002 1.47244 1.04167 1.13163 1.22330 0.95512 0.92757 1.00795 1.19054 0.88904 0.85055 0.95503 1.00738 1.21690 0.98696 1.01111 0.96528 1.21350 1.34136 1.07678 0.92762 0.92384 1.25678 0.95571 0.95583 1.01672 1.69999 1.38459 1.12582 1.34738 0.85591 0.78189 0.77492 0.80236 1.20828 1.20055 1.19486 1.66068 1.05246 1.32604 1.15825 1.21304 0.94891 0.97618 0.98637 1.21216 0.93195 0.99098 1.01477 0.90284 0.90935 0.89873 0.82715 0.83484 0.77163 0.88883 0.92366 0.91722 0.91572 0.96107 0.95037 0.95561 0.91702 0.92822 0.87236 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 71.24 0.71 -0.53 16 2 C -0.09 -1.52 5.88 -19.82 -0.12 -1.64 16 3 C -0.12 -2.01 9.68 22.23 0.22 -1.79 16 4 C -0.10 -1.98 9.48 22.49 0.21 -1.77 16 5 C -0.05 -1.26 5.88 -20.04 -0.12 -1.38 16 6 C 0.08 2.54 6.64 40.95 0.27 2.81 16 7 C -0.25 -5.88 10.62 67.04 0.71 -5.16 16 8 S 0.17 4.23 21.52 -56.49 -1.22 3.01 16 9 C 0.05 1.87 6.16 88.55 0.55 2.41 16 10 C 0.12 4.67 5.35 85.56 0.46 5.13 16 11 N -0.54 -23.99 4.61 -906.04 -4.18 -28.17 16 12 C 0.03 1.37 9.01 127.69 1.15 2.52 16 13 C 0.22 11.41 2.06 44.17 0.09 11.50 16 14 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 15 C -0.12 -6.17 8.76 71.98 0.63 -5.54 16 16 C -0.52 -28.95 7.93 25.60 0.20 -28.74 16 17 H 0.06 3.22 6.39 -2.91 -0.02 3.20 16 18 C 0.01 0.77 5.30 84.66 0.45 1.22 16 19 N -0.92 -52.86 11.32 21.45 0.24 -52.62 16 20 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 N -0.48 -17.40 9.93 -180.57 -1.79 -19.19 16 25 C -0.11 -2.97 9.64 22.49 0.22 -2.75 16 26 C -0.13 -2.93 9.68 22.24 0.22 -2.71 16 27 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 29 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 30 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.15 2.03 6.69 -2.91 -0.02 2.01 16 32 H 0.21 3.15 6.92 -2.91 -0.02 3.13 16 33 H 0.09 3.70 5.83 -2.38 -0.01 3.69 16 34 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 35 H 0.06 2.76 6.23 -2.39 -0.01 2.74 16 36 H 0.07 2.27 5.79 -2.39 -0.01 2.25 16 37 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.03 1.40 6.20 -2.38 -0.01 1.39 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 41 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.11 3.52 7.71 -2.91 -0.02 3.50 16 43 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -66.45 359.46 1.95 -64.50 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 1.02 Total: 12.87 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 5.85 Total: -26.43 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -5.73 Total: -99.97 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.22 Total: 3.01 kcal Total: -66.45 1.95 -64.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286477055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.980 kcal (2) G-P(sol) polarization free energy of solvation -66.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds