Wall clock time and date at job start Tue Mar 31 2020 11:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99867 * 2 1 4 4 N 1.46499 * 109.47219 * 124.99709 * 3 2 1 5 5 C 1.46499 * 120.00136 * 269.99493 * 4 3 2 6 6 C 1.50697 * 109.47293 * 270.00491 * 5 4 3 7 7 H 1.07997 * 120.00010 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00091 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00242 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 119.99879 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.46938 * 90.00404 * 10 8 6 12 12 H 1.48499 * 109.47143 * 210.00686 * 10 8 6 13 13 H 1.48496 * 109.47136 * 330.00589 * 10 8 6 14 14 C 1.34784 * 119.99971 * 89.99688 * 4 3 2 15 15 O 1.21283 * 119.99649 * 179.97438 * 14 4 3 16 16 C 1.50697 * 119.99774 * 359.72768 * 14 4 3 17 17 C 1.50700 * 109.46617 * 180.02562 * 16 14 4 18 18 C 1.34210 * 126.49818 * 265.01443 * 17 16 14 19 19 N 1.36896 * 109.92631 * 179.97438 * 18 17 16 20 20 H 0.97004 * 125.06994 * 179.97438 * 19 18 17 21 21 C 1.37691 * 109.86533 * 0.02562 * 19 18 17 22 22 C 1.39129 * 133.47287 * 180.02562 * 21 19 18 23 23 C 1.37951 * 119.75310 * 179.24755 * 22 21 19 24 24 F 1.35106 * 119.69247 * 180.20261 * 23 22 21 25 25 C 1.39025 * 120.61141 * 0.62088 * 23 22 21 26 26 C 1.36613 * 120.50588 * 359.60610 * 25 23 22 27 27 C 1.39626 * 119.79562 * 359.97438 * 26 25 23 28 28 H 1.08003 * 120.00239 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00211 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99875 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47074 * 4.99319 * 3 2 1 32 32 H 1.09008 * 109.46468 * 244.99290 * 3 2 1 33 33 H 1.08997 * 109.46865 * 30.00228 * 5 4 3 34 34 H 1.08998 * 109.47058 * 149.99741 * 5 4 3 35 35 H 0.96997 * 120.00230 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46809 * 299.99238 * 16 14 4 37 37 H 1.08993 * 109.47525 * 59.99679 * 16 14 4 38 38 H 1.08000 * 125.03825 * 359.95216 * 18 17 16 39 39 H 1.07995 * 120.12336 * 359.97438 * 22 21 19 40 40 H 1.07999 * 119.75127 * 179.58070 * 25 23 22 41 41 H 1.07994 * 120.09926 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5587 1.8652 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3038 3.8371 1.6366 8 6 2.5192 4.0668 3.6084 9 7 2.7686 5.3572 3.6569 10 14 1.7246 3.2135 5.0679 11 1 2.7806 2.7226 5.9892 12 1 0.8485 4.1738 5.7859 13 1 0.9131 2.0660 4.5887 14 6 4.2496 0.8662 0.9825 15 8 5.0198 0.8889 1.9191 16 6 4.6951 0.3122 -0.3463 17 6 6.1297 -0.1384 -0.2470 18 6 7.2157 0.5753 -0.5825 19 7 8.3468 -0.1615 -0.3551 20 1 9.2528 0.1424 -0.5217 21 6 8.0067 -1.3987 0.1445 22 6 8.7475 -2.5087 0.5382 23 6 8.1007 -3.6262 1.0239 24 9 8.8214 -4.7018 1.4097 25 6 6.7136 -3.6590 1.1120 26 6 5.9685 -2.5809 0.7260 27 6 6.6039 -1.4367 0.2397 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3585 2.1316 0.0894 32 1 2.6213 1.4025 -0.9314 33 1 1.4887 1.6969 2.5458 34 1 3.0988 1.3606 3.2259 35 1 2.5397 5.8659 4.4505 36 1 4.0660 -0.5363 -0.6154 37 1 4.6087 1.0852 -1.1097 38 1 7.1996 1.5816 -0.9742 39 1 9.8254 -2.4912 0.4748 40 1 6.2212 -4.5436 1.4881 41 1 4.8914 -2.6134 0.7977 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293952876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:45 Heat of formation + Delta-G solvation = 3.608905 kcal Electronic energy + Delta-G solvation = -25607.524425 eV Core-core repulsion = 21789.186461 eV Total energy + Delta-G solvation = -3818.337964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.89266 -41.31071 -39.02969 -36.69469 -35.70177 -33.35563 -32.83211 -32.08385 -30.35672 -29.21840 -28.38314 -26.69388 -25.41376 -23.18583 -22.40348 -21.90980 -20.13122 -19.63323 -18.47304 -17.93726 -17.17597 -16.88690 -16.35645 -16.26063 -15.63189 -15.57241 -15.27293 -14.76328 -14.42184 -14.23621 -14.06911 -13.87657 -13.63926 -13.15485 -13.02414 -12.79452 -12.55344 -12.27623 -12.21249 -11.70220 -11.57445 -11.43451 -11.38412 -11.08117 -10.94817 -10.91634 -10.50577 -10.12262 -9.67668 -9.54094 -9.25752 -8.93533 -8.57428 -8.22957 -7.70466 -7.64311 -6.07831 -4.06002 0.95932 1.44269 2.37162 2.61698 3.00643 3.30674 3.36721 3.39109 3.42327 3.70146 4.05241 4.33345 4.41225 4.60153 4.76149 4.95867 5.00544 5.06084 5.21799 5.24804 5.30882 5.37792 5.40751 5.46715 5.62030 5.63919 5.77916 5.88835 5.95933 6.02561 6.13489 6.15872 6.39069 6.62194 6.70901 6.72507 6.76592 6.86130 6.99543 7.05697 7.40043 7.46325 7.63697 8.29778 8.48730 8.94664 9.05889 9.53384 11.05574 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.003571 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.736963 B = 7838.987858 C = 8277.932029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.169 4.169 3 C 0.136 3.864 4 N -0.592 5.592 5 C 0.218 3.782 6 C -0.527 4.527 7 H 0.074 0.926 8 C 0.072 3.928 9 N -0.899 5.899 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.507 3.493 15 O -0.528 6.528 16 C -0.068 4.068 17 C -0.136 4.136 18 C 0.063 3.937 19 N -0.591 5.591 20 H 0.417 0.583 21 C 0.120 3.880 22 C -0.169 4.169 23 C 0.113 3.887 24 F -0.143 7.143 25 C -0.182 4.182 26 C -0.033 4.033 27 C -0.097 4.097 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.173 0.827 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 -15.007 -12.705 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.188 4.188 3 C 0.012 3.988 4 N -0.324 5.324 5 C 0.097 3.903 6 C -0.565 4.565 7 H 0.092 0.908 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.701 3.299 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.294 3.706 15 O -0.404 6.404 16 C -0.109 4.109 17 C -0.143 4.143 18 C -0.062 4.062 19 N -0.194 5.194 20 H 0.253 0.747 21 C 0.012 3.988 22 C -0.191 4.191 23 C 0.093 3.907 24 F -0.121 7.121 25 C -0.202 4.202 26 C -0.052 4.052 27 C -0.102 4.102 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.190 0.810 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.920 -14.767 -12.078 19.975 hybrid contribution 0.115 -0.218 0.904 0.937 sum 6.035 -14.985 -11.174 19.643 Atomic orbital electron populations 1.23840 0.95902 1.01793 1.00690 1.23464 0.96387 0.99142 0.99798 1.20605 0.93169 0.95249 0.89774 1.47913 1.10799 1.60837 1.12832 1.19615 0.94789 0.95036 0.80840 1.21338 1.40954 0.91221 1.02998 0.90775 1.24842 0.95307 0.94705 0.98109 1.69891 1.47965 1.06620 1.29273 0.86877 0.79895 0.79696 0.83418 1.19954 1.21107 1.18997 1.20362 0.81930 0.78533 0.89823 1.90690 1.52299 1.55583 1.41852 1.20065 0.92276 1.01568 0.96966 1.19641 0.93914 0.93258 1.07469 1.21617 0.84321 0.97015 1.03261 1.41638 1.08756 1.11759 1.57242 0.74657 1.17736 0.93680 0.86984 1.00384 1.19703 0.99647 0.91971 1.07739 1.17116 0.89265 0.83829 1.00536 1.91474 1.78169 1.53521 1.88981 1.20544 0.91719 1.00839 1.07054 1.20096 0.99851 0.90495 0.94742 1.19046 0.91813 0.95034 1.04339 0.88793 0.88261 0.87685 0.89345 0.90372 0.95349 0.94701 0.92617 0.88777 0.88507 0.80981 0.85232 0.84928 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 14.32 29.02 0.42 -1.73 16 2 C -0.17 -2.14 9.74 -36.02 -0.35 -2.49 16 3 C 0.14 2.02 5.65 -5.19 -0.03 1.99 16 4 N -0.59 -11.71 2.44 -176.43 -0.43 -12.15 16 5 C 0.22 5.29 4.23 -5.20 -0.02 5.26 16 6 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 7 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 10 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 11 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 14 C 0.51 9.91 7.66 -10.98 -0.08 9.82 16 15 O -0.53 -12.89 15.61 5.56 0.09 -12.80 16 16 C -0.07 -0.94 4.79 -29.04 -0.14 -1.08 16 17 C -0.14 -1.94 4.81 -102.70 -0.49 -2.43 16 18 C 0.06 0.78 11.73 -16.71 -0.20 0.58 16 19 N -0.59 -6.58 6.07 -10.64 -0.06 -6.64 16 20 H 0.42 3.17 8.96 -40.82 -0.37 2.80 16 21 C 0.12 1.59 7.28 -83.99 -0.61 0.98 16 22 C -0.17 -2.06 10.05 -39.36 -0.40 -2.46 16 23 C 0.11 1.44 7.28 -39.39 -0.29 1.16 16 24 F -0.14 -1.82 17.25 2.25 0.04 -1.78 16 25 C -0.18 -2.25 9.95 -39.88 -0.40 -2.64 16 26 C -0.03 -0.44 10.05 -39.65 -0.40 -0.84 16 27 C -0.10 -1.42 6.35 -105.13 -0.67 -2.08 16 28 H 0.09 0.93 8.06 -52.48 -0.42 0.51 16 29 H 0.10 1.15 7.84 -52.48 -0.41 0.74 16 30 H 0.11 1.22 7.81 -52.49 -0.41 0.81 16 31 H 0.09 1.40 7.72 -51.93 -0.40 1.00 16 32 H 0.08 0.94 6.44 -51.92 -0.33 0.60 16 33 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 34 H 0.03 0.92 6.85 -51.93 -0.36 0.56 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.09 1.07 7.75 -51.93 -0.40 0.67 16 37 H 0.10 1.10 7.39 -51.93 -0.38 0.72 16 38 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 357.42 15.07 5.39 5.39 Total: -1.00 -35.86 357.42 -8.11 -43.97 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.14 Total: 3.09 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -4.10 Total: -9.26 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.28 Total: -45.63 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.86 -8.11 -43.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293952876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.579 kcal (2) G-P(sol) polarization free energy of solvation -35.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds