Wall clock time and date at job start Tue Mar 31 2020 11:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99867 * 2 1 4 4 N 1.46499 * 109.47219 * 124.99709 * 3 2 1 5 5 C 1.46499 * 120.00136 * 269.99493 * 4 3 2 6 6 C 1.50697 * 109.47293 * 270.00491 * 5 4 3 7 7 H 1.07997 * 120.00010 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00091 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00242 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 119.99879 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.46938 * 90.00404 * 10 8 6 12 12 H 1.48499 * 109.47143 * 210.00686 * 10 8 6 13 13 H 1.48496 * 109.47136 * 330.00589 * 10 8 6 14 14 C 1.34784 * 119.99971 * 89.99688 * 4 3 2 15 15 O 1.21283 * 119.99649 * 179.97438 * 14 4 3 16 16 C 1.50697 * 119.99774 * 359.72768 * 14 4 3 17 17 C 1.50700 * 109.46617 * 180.02562 * 16 14 4 18 18 C 1.34210 * 126.49818 * 265.01443 * 17 16 14 19 19 N 1.36896 * 109.92631 * 179.97438 * 18 17 16 20 20 H 0.97004 * 125.06994 * 179.97438 * 19 18 17 21 21 C 1.37691 * 109.86533 * 0.02562 * 19 18 17 22 22 C 1.39129 * 133.47287 * 180.02562 * 21 19 18 23 23 C 1.37951 * 119.75310 * 179.24755 * 22 21 19 24 24 F 1.35106 * 119.69247 * 180.20261 * 23 22 21 25 25 C 1.39025 * 120.61141 * 0.62088 * 23 22 21 26 26 C 1.36613 * 120.50588 * 359.60610 * 25 23 22 27 27 C 1.39626 * 119.79562 * 359.97438 * 26 25 23 28 28 H 1.08003 * 120.00239 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00211 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99875 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47074 * 4.99319 * 3 2 1 32 32 H 1.09008 * 109.46468 * 244.99290 * 3 2 1 33 33 H 1.08997 * 109.46865 * 30.00228 * 5 4 3 34 34 H 1.08998 * 109.47058 * 149.99741 * 5 4 3 35 35 H 0.96997 * 120.00230 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46809 * 299.99238 * 16 14 4 37 37 H 1.08993 * 109.47525 * 59.99679 * 16 14 4 38 38 H 1.08000 * 125.03825 * 359.95216 * 18 17 16 39 39 H 1.07995 * 120.12336 * 359.97438 * 22 21 19 40 40 H 1.07999 * 119.75127 * 179.58070 * 25 23 22 41 41 H 1.07994 * 120.09926 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5587 1.8652 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3038 3.8371 1.6366 8 6 2.5192 4.0668 3.6084 9 7 2.7686 5.3572 3.6569 10 14 1.7246 3.2135 5.0679 11 1 2.7806 2.7226 5.9892 12 1 0.8485 4.1738 5.7859 13 1 0.9131 2.0660 4.5887 14 6 4.2496 0.8662 0.9825 15 8 5.0198 0.8889 1.9191 16 6 4.6951 0.3122 -0.3463 17 6 6.1297 -0.1384 -0.2470 18 6 7.2157 0.5753 -0.5825 19 7 8.3468 -0.1615 -0.3551 20 1 9.2528 0.1424 -0.5217 21 6 8.0067 -1.3987 0.1445 22 6 8.7475 -2.5087 0.5382 23 6 8.1007 -3.6262 1.0239 24 9 8.8214 -4.7018 1.4097 25 6 6.7136 -3.6590 1.1120 26 6 5.9685 -2.5809 0.7260 27 6 6.6039 -1.4367 0.2397 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3585 2.1316 0.0894 32 1 2.6213 1.4025 -0.9314 33 1 1.4887 1.6969 2.5458 34 1 3.0988 1.3606 3.2259 35 1 2.5397 5.8659 4.4505 36 1 4.0660 -0.5363 -0.6154 37 1 4.6087 1.0852 -1.1097 38 1 7.1996 1.5816 -0.9742 39 1 9.8254 -2.4912 0.4748 40 1 6.2212 -4.5436 1.4881 41 1 4.8914 -2.6134 0.7977 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293952876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:44 Heat of formation + Delta-G solvation = -18.450060 kcal Electronic energy + Delta-G solvation = -25608.480973 eV Core-core repulsion = 21789.186461 eV Total energy + Delta-G solvation = -3819.294512 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.86380 -42.26550 -40.52488 -37.63785 -37.12896 -35.08935 -34.00748 -33.66774 -31.47156 -30.41081 -29.81368 -27.88581 -26.76116 -24.30056 -24.10261 -22.87132 -21.30344 -20.68337 -19.67560 -19.07383 -19.00711 -18.12954 -17.76592 -17.29567 -17.03262 -16.59755 -16.25321 -16.20799 -15.91751 -15.50095 -15.17362 -14.89505 -14.69291 -14.61783 -14.29283 -14.06844 -14.03174 -13.63376 -13.56427 -13.19868 -12.94268 -12.81629 -12.49904 -12.36234 -12.32850 -12.15412 -11.92762 -11.89771 -11.70291 -10.82107 -10.77446 -10.40152 -10.24842 -9.34338 -9.19081 -8.61618 -8.32401 -6.35892 -0.00153 0.47274 1.31625 1.36039 1.39226 1.44598 1.61965 1.95791 2.13144 2.31578 2.56783 2.80052 3.02559 3.39797 3.68286 3.83753 3.92425 4.01929 4.08087 4.19959 4.33176 4.34487 4.43530 4.54713 4.57527 4.66968 4.77238 4.83337 4.92662 4.96702 5.00066 5.10036 5.14593 5.18330 5.43186 5.49712 5.61426 5.68147 5.75187 5.79310 5.99638 6.09785 6.28378 6.65491 6.66677 6.81639 7.25572 7.56513 8.84310 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.003571 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.736963 B = 7838.987858 C = 8277.932029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.179 4.179 3 C 0.131 3.869 4 N -0.599 5.599 5 C 0.229 3.771 6 C -0.530 4.530 7 H 0.034 0.966 8 C 0.013 3.987 9 N -0.945 5.945 10 Si 0.941 3.059 11 H -0.279 1.279 12 H -0.274 1.274 13 H -0.240 1.240 14 C 0.500 3.500 15 O -0.587 6.587 16 C -0.052 4.052 17 C -0.170 4.170 18 C 0.069 3.931 19 N -0.580 5.580 20 H 0.432 0.568 21 C 0.104 3.896 22 C -0.166 4.166 23 C 0.098 3.902 24 F -0.144 7.144 25 C -0.182 4.182 26 C -0.049 4.049 27 C -0.121 4.121 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.013 0.987 35 H 0.267 0.733 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.198 0.802 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 -16.750 -13.679 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.199 4.199 3 C 0.009 3.991 4 N -0.329 5.329 5 C 0.106 3.894 6 C -0.569 4.569 7 H 0.052 0.948 8 C -0.185 4.185 9 N -0.585 5.585 10 Si 0.764 3.236 11 H -0.205 1.205 12 H -0.200 1.200 13 H -0.163 1.163 14 C 0.290 3.710 15 O -0.467 6.467 16 C -0.092 4.092 17 C -0.177 4.177 18 C -0.057 4.057 19 N -0.184 5.184 20 H 0.272 0.728 21 C -0.005 4.005 22 C -0.188 4.188 23 C 0.077 3.923 24 F -0.123 7.123 25 C -0.201 4.201 26 C -0.067 4.067 27 C -0.126 4.126 28 H 0.134 0.866 29 H 0.115 0.885 30 H 0.138 0.862 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.215 0.785 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.176 -16.530 -13.114 21.726 hybrid contribution 0.395 0.381 1.131 1.257 sum 5.571 -16.149 -11.983 20.867 Atomic orbital electron populations 1.24055 0.95674 1.02777 0.98683 1.23348 0.96651 0.98337 1.01517 1.20859 0.92731 0.96284 0.89208 1.47998 1.12080 1.60316 1.12526 1.19205 0.95061 0.92071 0.83071 1.21582 1.40087 0.93465 1.01752 0.94811 1.25767 0.96053 0.95319 1.01330 1.70034 1.49651 1.08381 1.30447 0.85813 0.79089 0.79432 0.79242 1.20529 1.19962 1.16341 1.21426 0.80959 0.77321 0.91334 1.90652 1.53797 1.57967 1.44287 1.20024 0.92570 1.02946 0.93642 1.19832 0.94586 0.93824 1.09444 1.22084 0.84216 0.97650 1.01765 1.41656 1.09492 1.11004 1.56266 0.72775 1.17924 0.93601 0.87887 1.01056 1.19930 1.00770 0.91407 1.06693 1.17292 0.89622 0.84122 1.01220 1.91467 1.78192 1.53576 1.89072 1.20775 0.91740 1.01270 1.06356 1.20289 1.00546 0.90606 0.95282 1.19398 0.92763 0.95643 1.04801 0.86613 0.88513 0.86215 0.90807 0.87268 0.93981 0.96928 0.92377 0.86061 0.85796 0.78544 0.83129 0.83111 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 14.32 67.79 0.97 -2.57 16 2 C -0.18 -4.06 9.74 25.65 0.25 -3.81 16 3 C 0.13 3.68 5.65 85.63 0.48 4.17 16 4 N -0.60 -23.38 2.44 -830.50 -2.03 -25.40 16 5 C 0.23 11.13 4.23 85.63 0.36 11.49 16 6 C -0.53 -30.96 9.94 25.60 0.25 -30.71 16 7 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 8 C 0.01 0.78 5.47 84.65 0.46 1.25 16 9 N -0.94 -59.57 13.96 21.45 0.30 -59.27 16 10 Si 0.94 44.95 27.47 68.60 1.88 46.84 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.24 -10.40 6.54 99.48 0.65 -9.74 16 14 C 0.50 19.36 7.66 87.65 0.67 20.03 16 15 O -0.59 -29.24 15.61 -3.04 -0.05 -29.29 16 16 C -0.05 -1.33 4.79 29.10 0.14 -1.19 16 17 C -0.17 -4.63 4.81 -18.62 -0.09 -4.72 16 18 C 0.07 1.60 11.73 82.98 0.97 2.57 16 19 N -0.58 -12.03 6.07 -187.59 -1.14 -13.17 16 20 H 0.43 5.80 8.96 -92.71 -0.83 4.97 16 21 C 0.10 2.64 7.28 39.03 0.28 2.92 16 22 C -0.17 -3.87 10.05 22.42 0.23 -3.65 16 23 C 0.10 2.41 7.28 22.39 0.16 2.57 16 24 F -0.14 -3.53 17.25 44.97 0.78 -2.75 16 25 C -0.18 -4.33 9.95 22.08 0.22 -4.11 16 26 C -0.05 -1.26 10.05 22.22 0.22 -1.04 16 27 C -0.12 -3.42 6.35 -20.19 -0.13 -3.55 16 28 H 0.12 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.10 2.01 7.84 -2.91 -0.02 1.99 16 30 H 0.12 2.38 7.81 -2.91 -0.02 2.35 16 31 H 0.07 2.27 7.72 -2.39 -0.02 2.26 16 32 H 0.11 2.33 6.44 -2.38 -0.02 2.31 16 33 H 0.04 1.92 7.13 -2.39 -0.02 1.91 16 34 H 0.01 0.67 6.85 -2.39 -0.02 0.66 16 35 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.12 2.41 7.75 -2.39 -0.02 2.39 16 37 H 0.12 2.45 7.39 -2.39 -0.02 2.43 16 38 H 0.20 3.35 8.06 -2.91 -0.02 3.32 16 39 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 40 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -80.99 357.42 5.39 -75.60 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.17 Total: 17.79 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 5.47 Total: -10.34 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -2.87 Total: -97.84 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.05 Total: -29.29 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.78 Total: -2.75 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -80.99 5.39 -75.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293952876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.152 kcal (2) G-P(sol) polarization free energy of solvation -80.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds