Wall clock time and date at job start Tue Mar 31 2020 11:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47058 * 2 1 4 4 N 1.46500 * 109.47260 * 180.02562 * 3 2 1 5 5 C 1.36862 * 119.99916 * 267.13687 * 4 3 2 6 6 H 1.08001 * 120.00133 * 144.97900 * 5 4 3 7 7 C 1.39051 * 120.00179 * 324.98326 * 5 4 3 8 8 N 1.31359 * 120.00195 * 157.58069 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 337.57707 * 7 5 4 10 10 H 1.48500 * 109.47287 * 95.40261 * 9 7 5 11 11 H 1.48501 * 109.47019 * 215.40582 * 9 7 5 12 12 H 1.48500 * 109.47056 * 335.40054 * 9 7 5 13 13 C 1.34781 * 119.99907 * 87.13585 * 4 3 2 14 14 O 1.21609 * 120.00310 * 5.11796 * 13 4 3 15 15 C 1.47600 * 119.99701 * 185.11532 * 13 4 3 16 16 C 1.39188 * 120.27348 * 51.59582 * 15 13 4 17 17 C 1.40391 * 117.96914 * 179.97438 * 16 15 13 18 18 C 1.40616 * 121.17950 * 180.26932 * 17 16 15 19 19 C 1.36059 * 119.65025 * 180.30944 * 18 17 16 20 20 C 1.39601 * 120.80223 * 359.45060 * 19 18 17 21 21 F 1.35099 * 119.48116 * 180.27383 * 20 19 18 22 22 C 1.36401 * 121.03877 * 0.26218 * 20 19 18 23 23 C 1.40409 * 119.80662 * 0.02562 * 22 20 19 24 24 N 1.33836 * 120.79775 * 179.97438 * 23 22 20 25 25 C 1.30805 * 121.73711 * 180.02562 * 24 23 22 26 26 C 1.50700 * 119.24383 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47469 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47339 * 299.99793 * 1 2 3 29 29 H 1.08996 * 109.47319 * 60.00256 * 1 2 3 30 30 H 1.09004 * 109.47339 * 240.00207 * 2 1 3 31 31 H 1.08996 * 109.47319 * 119.99744 * 2 1 3 32 32 H 1.08994 * 109.47385 * 59.99795 * 3 2 1 33 33 H 1.09006 * 109.46793 * 300.00003 * 3 2 1 34 34 H 0.96999 * 120.00443 * 180.02562 * 8 7 5 35 35 H 1.08000 * 121.01208 * 359.97438 * 16 15 13 36 36 H 1.08001 * 120.17144 * 0.03407 * 18 17 16 37 37 H 1.08006 * 119.59749 * 179.73486 * 19 18 17 38 38 H 1.07990 * 120.09666 * 179.97438 * 22 20 19 39 39 H 1.08994 * 109.47350 * 90.25485 * 26 25 24 40 40 H 1.09002 * 109.47078 * 210.26065 * 26 25 24 41 41 H 1.09006 * 109.46839 * 330.25639 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1897 1.5016 1.1829 6 1 5.1231 0.9698 1.2938 7 6 3.6837 2.2463 2.2426 8 7 4.0577 1.9765 3.4726 9 14 2.4721 3.6302 1.9170 10 1 1.0860 3.1245 2.0850 11 1 2.7151 4.7369 2.8769 12 1 2.6521 4.1296 0.5301 13 6 4.1783 1.3844 -1.1667 14 8 3.5735 1.4259 -2.2209 15 6 5.6499 1.2705 -1.1641 16 6 6.2758 0.2811 -0.4114 17 6 7.6778 0.2164 -0.4446 18 6 8.3791 -0.7595 0.2855 19 6 9.7385 -0.7897 0.2357 20 6 10.4460 0.1296 -0.5409 21 9 11.7953 0.0717 -0.5752 22 6 9.7964 1.0852 -1.2657 23 6 8.3943 1.1518 -1.2348 24 7 7.7367 2.0815 -1.9379 25 6 6.4312 2.1606 -1.9221 26 6 5.7484 3.2297 -2.7358 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6765 1.9563 -0.8901 34 1 3.7044 2.4957 4.2119 35 1 5.7004 -0.4155 0.1803 36 1 7.8417 -1.4784 0.8862 37 1 10.2764 -1.5370 0.8003 38 1 10.3590 1.7890 -1.8610 39 1 5.5313 2.8449 -3.7321 40 1 4.8180 3.5194 -2.2473 41 1 6.4023 4.0981 -2.8162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299056066.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:54 Heat of formation + Delta-G solvation = -20.580566 kcal Electronic energy + Delta-G solvation = -26376.732631 eV Core-core repulsion = 22557.345733 eV Total energy + Delta-G solvation = -3819.386898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.92334 -40.70458 -38.96832 -36.78983 -35.40724 -33.55275 -32.84647 -31.77450 -31.56827 -29.86865 -27.65766 -26.14138 -25.21915 -23.64920 -22.72137 -22.04333 -21.32647 -19.79766 -18.45215 -17.82333 -16.81304 -16.42980 -16.04281 -15.65810 -15.63183 -15.46636 -14.57767 -14.30138 -14.27857 -14.21317 -13.81253 -13.73044 -13.21037 -13.05936 -12.77095 -12.58967 -12.57384 -12.38396 -11.85707 -11.85380 -11.72848 -11.60483 -11.45063 -11.10611 -10.96280 -10.93560 -10.58968 -10.32274 -9.90744 -9.87916 -9.53879 -9.25377 -8.76216 -8.36693 -8.17471 -7.87550 -6.65511 -4.21861 0.45781 0.85555 2.08696 2.78739 2.94063 3.12100 3.18184 3.56285 3.96391 4.00656 4.12585 4.34229 4.49820 4.74252 4.79990 4.91344 5.00516 5.09865 5.21981 5.40763 5.47103 5.52772 5.64951 5.78676 5.84269 5.91346 5.96557 6.01768 6.02387 6.09337 6.11673 6.18995 6.24836 6.26684 6.33551 6.44014 6.51135 6.62813 6.71613 6.76262 6.96712 7.16447 7.84121 8.04289 8.16078 8.74082 9.12970 9.44681 10.43532 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.004336 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.115689 B = 6455.888299 C = 6832.476978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.102 3.898 4 N -0.447 5.447 5 C -0.358 4.358 6 H 0.113 0.887 7 C 0.072 3.928 8 N -0.848 5.848 9 Si 0.873 3.127 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.260 1.260 13 C 0.514 3.486 14 O -0.586 6.586 15 C -0.133 4.133 16 C -0.005 4.005 17 C -0.124 4.124 18 C -0.046 4.046 19 C -0.166 4.166 20 C 0.117 3.883 21 F -0.140 7.140 22 C -0.139 4.139 23 C 0.162 3.838 24 N -0.491 5.491 25 C 0.210 3.790 26 C -0.101 4.101 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.278 0.722 35 H 0.151 0.849 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 -3.751 -4.515 7.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.021 4.021 4 N -0.165 5.165 5 C -0.485 4.485 6 H 0.131 0.869 7 C -0.137 4.137 8 N -0.482 5.482 9 Si 0.700 3.300 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.184 1.184 13 C 0.303 3.697 14 O -0.471 6.471 15 C -0.138 4.138 16 C -0.031 4.031 17 C -0.126 4.126 18 C -0.065 4.065 19 C -0.185 4.185 20 C 0.096 3.904 21 F -0.119 7.119 22 C -0.159 4.159 23 C 0.040 3.960 24 N -0.201 5.201 25 C 0.058 3.942 26 C -0.159 4.159 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.169 0.831 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.350 -3.127 -5.260 7.508 hybrid contribution -0.744 0.152 0.884 1.166 sum 3.605 -2.975 -4.376 6.403 Atomic orbital electron populations 1.21704 0.96126 1.01232 1.01493 1.21763 0.95043 0.97574 1.02582 1.21704 0.81732 0.97096 1.01532 1.43686 1.04233 1.62971 1.05633 1.19293 1.08991 1.32459 0.87753 0.86934 1.25318 0.97013 0.96749 0.94622 1.69719 1.42563 1.37465 0.98487 0.87014 0.80787 0.82594 0.79562 1.19849 1.21339 1.18413 1.17886 0.85821 0.81897 0.84067 1.90670 1.69263 1.56026 1.31156 1.20734 0.95789 0.97901 0.99360 1.21971 0.92309 0.96126 0.92710 1.18824 0.94351 0.98508 1.00924 1.20945 0.93336 0.96255 0.95930 1.20782 0.94847 1.00773 1.02087 1.17304 0.76775 0.97315 0.99000 1.91494 1.29237 1.95940 1.95221 1.20543 0.92892 1.00091 1.02365 1.18426 0.92871 0.91435 0.93291 1.67743 1.09141 1.21874 1.21355 1.21445 0.88348 0.93138 0.91227 1.20778 1.00005 0.95530 0.99547 0.92878 0.92949 0.92909 0.91951 0.91130 0.91402 0.91015 0.91190 0.83113 0.84045 0.84486 0.83857 0.89639 0.90041 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.15 0.37 -1.79 16 2 C -0.13 -2.34 6.25 -26.73 -0.17 -2.51 16 3 C 0.10 2.11 4.13 -4.04 -0.02 2.09 16 4 N -0.45 -10.06 2.22 -115.97 -0.26 -10.32 16 5 C -0.36 -8.66 8.96 -15.00 -0.13 -8.80 16 6 H 0.11 2.77 5.00 -52.49 -0.26 2.51 16 7 C 0.07 1.79 5.31 -17.45 -0.09 1.70 16 8 N -0.85 -22.05 13.95 55.50 0.77 -21.28 16 9 Si 0.87 19.48 24.93 -169.99 -4.24 15.24 16 10 H -0.27 -5.75 6.66 56.52 0.38 -5.37 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.51 11.37 6.11 -12.44 -0.08 11.30 16 14 O -0.59 -13.63 15.44 5.27 0.08 -13.55 16 15 C -0.13 -2.70 5.06 -104.83 -0.53 -3.23 16 16 C 0.00 -0.09 7.55 -38.42 -0.29 -0.38 16 17 C -0.12 -2.08 5.74 -106.80 -0.61 -2.70 16 18 C -0.05 -0.63 9.77 -39.47 -0.39 -1.01 16 19 C -0.17 -2.09 9.93 -39.86 -0.40 -2.48 16 20 C 0.12 1.61 7.23 -39.74 -0.29 1.32 16 21 F -0.14 -1.87 17.24 2.25 0.04 -1.83 16 22 C -0.14 -2.09 9.93 -39.43 -0.39 -2.48 16 23 C 0.16 2.83 6.61 -84.79 -0.56 2.27 16 24 N -0.49 -9.15 10.20 -6.93 -0.07 -9.22 16 25 C 0.21 4.05 6.82 -82.13 -0.56 3.49 16 26 C -0.10 -1.72 9.20 36.01 0.33 -1.39 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.44 3.07 -51.93 -0.16 1.28 16 33 H 0.07 1.47 7.44 -51.93 -0.39 1.08 16 34 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.15 2.64 7.16 -52.49 -0.38 2.27 16 36 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.50 6.76 -51.93 -0.35 1.15 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -27.62 342.26 -7.24 -34.86 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.92 Total: 5.54 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.80 Total: -4.61 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.45 Total: -40.81 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.24 Total: 15.24 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.62 -7.24 -34.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299056066.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.281 kcal (2) G-P(sol) polarization free energy of solvation -27.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds