Wall clock time and date at job start Tue Mar 31 2020 11:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47058 * 2 1 4 4 N 1.46500 * 109.47260 * 180.02562 * 3 2 1 5 5 C 1.36862 * 119.99916 * 267.13687 * 4 3 2 6 6 H 1.08001 * 120.00133 * 144.97900 * 5 4 3 7 7 C 1.39051 * 120.00179 * 324.98326 * 5 4 3 8 8 N 1.31359 * 120.00195 * 157.58069 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 337.57707 * 7 5 4 10 10 H 1.48500 * 109.47287 * 95.40261 * 9 7 5 11 11 H 1.48501 * 109.47019 * 215.40582 * 9 7 5 12 12 H 1.48500 * 109.47056 * 335.40054 * 9 7 5 13 13 C 1.34781 * 119.99907 * 87.13585 * 4 3 2 14 14 O 1.21609 * 120.00310 * 5.11796 * 13 4 3 15 15 C 1.47600 * 119.99701 * 185.11532 * 13 4 3 16 16 C 1.39188 * 120.27348 * 51.59582 * 15 13 4 17 17 C 1.40391 * 117.96914 * 179.97438 * 16 15 13 18 18 C 1.40616 * 121.17950 * 180.26932 * 17 16 15 19 19 C 1.36059 * 119.65025 * 180.30944 * 18 17 16 20 20 C 1.39601 * 120.80223 * 359.45060 * 19 18 17 21 21 F 1.35099 * 119.48116 * 180.27383 * 20 19 18 22 22 C 1.36401 * 121.03877 * 0.26218 * 20 19 18 23 23 C 1.40409 * 119.80662 * 0.02562 * 22 20 19 24 24 N 1.33836 * 120.79775 * 179.97438 * 23 22 20 25 25 C 1.30805 * 121.73711 * 180.02562 * 24 23 22 26 26 C 1.50700 * 119.24383 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47469 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47339 * 299.99793 * 1 2 3 29 29 H 1.08996 * 109.47319 * 60.00256 * 1 2 3 30 30 H 1.09004 * 109.47339 * 240.00207 * 2 1 3 31 31 H 1.08996 * 109.47319 * 119.99744 * 2 1 3 32 32 H 1.08994 * 109.47385 * 59.99795 * 3 2 1 33 33 H 1.09006 * 109.46793 * 300.00003 * 3 2 1 34 34 H 0.96999 * 120.00443 * 180.02562 * 8 7 5 35 35 H 1.08000 * 121.01208 * 359.97438 * 16 15 13 36 36 H 1.08001 * 120.17144 * 0.03407 * 18 17 16 37 37 H 1.08006 * 119.59749 * 179.73486 * 19 18 17 38 38 H 1.07990 * 120.09666 * 179.97438 * 22 20 19 39 39 H 1.08994 * 109.47350 * 90.25485 * 26 25 24 40 40 H 1.09002 * 109.47078 * 210.26065 * 26 25 24 41 41 H 1.09006 * 109.46839 * 330.25639 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1897 1.5016 1.1829 6 1 5.1231 0.9698 1.2938 7 6 3.6837 2.2463 2.2426 8 7 4.0577 1.9765 3.4726 9 14 2.4721 3.6302 1.9170 10 1 1.0860 3.1245 2.0850 11 1 2.7151 4.7369 2.8769 12 1 2.6521 4.1296 0.5301 13 6 4.1783 1.3844 -1.1667 14 8 3.5735 1.4259 -2.2209 15 6 5.6499 1.2705 -1.1641 16 6 6.2758 0.2811 -0.4114 17 6 7.6778 0.2164 -0.4446 18 6 8.3791 -0.7595 0.2855 19 6 9.7385 -0.7897 0.2357 20 6 10.4460 0.1296 -0.5409 21 9 11.7953 0.0717 -0.5752 22 6 9.7964 1.0852 -1.2657 23 6 8.3943 1.1518 -1.2348 24 7 7.7367 2.0815 -1.9379 25 6 6.4312 2.1606 -1.9221 26 6 5.7484 3.2297 -2.7358 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6765 1.9563 -0.8901 34 1 3.7044 2.4957 4.2119 35 1 5.7004 -0.4155 0.1803 36 1 7.8417 -1.4784 0.8862 37 1 10.2764 -1.5370 0.8003 38 1 10.3590 1.7890 -1.8610 39 1 5.5313 2.8449 -3.7321 40 1 4.8180 3.5194 -2.2473 41 1 6.4023 4.0981 -2.8162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299056066.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:54 Heat of formation + Delta-G solvation = -34.610177 kcal Electronic energy + Delta-G solvation = -26377.341001 eV Core-core repulsion = 22557.345733 eV Total energy + Delta-G solvation = -3819.995267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.03449 -42.09052 -40.58143 -38.10215 -37.10815 -35.01293 -34.40638 -33.44139 -32.86894 -31.15026 -28.96576 -27.63655 -26.97652 -25.06820 -23.94633 -23.38293 -22.72708 -21.41736 -19.93867 -19.31112 -18.09631 -18.06553 -17.42133 -17.22965 -16.92475 -16.74285 -16.00870 -15.81797 -15.70849 -15.65460 -15.35127 -14.98727 -14.70825 -14.41423 -14.20473 -14.12755 -13.91590 -13.87241 -13.38040 -13.24822 -13.12491 -13.09632 -12.64316 -12.56043 -12.51766 -12.19370 -12.16546 -11.93281 -11.54107 -11.38082 -11.12936 -10.87314 -10.42739 -9.86275 -9.62387 -9.28815 -8.55091 -6.12428 -0.81489 -0.44652 0.76689 1.14899 1.29405 1.38941 1.50511 1.93473 2.13575 2.49543 2.83341 2.90642 2.96223 3.29923 3.52491 3.64484 3.71363 3.81457 3.94655 4.05855 4.11812 4.14758 4.30952 4.38533 4.53563 4.55023 4.60654 4.67149 4.68771 4.73449 4.90020 4.93168 4.93523 4.98608 5.11237 5.11999 5.19759 5.23612 5.27856 5.44793 5.47440 5.73320 5.98722 6.19561 6.76935 6.88379 7.31708 7.65889 8.56794 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.004336 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.115689 B = 6455.888299 C = 6832.476978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.095 3.905 4 N -0.458 5.458 5 C -0.353 4.353 6 H 0.103 0.897 7 C 0.037 3.963 8 N -0.884 5.884 9 Si 0.913 3.087 10 H -0.252 1.252 11 H -0.288 1.288 12 H -0.270 1.270 13 C 0.520 3.480 14 O -0.601 6.601 15 C -0.167 4.167 16 C 0.000 4.000 17 C -0.137 4.137 18 C -0.046 4.046 19 C -0.151 4.151 20 C 0.131 3.869 21 F -0.133 7.133 22 C -0.152 4.152 23 C 0.145 3.855 24 N -0.498 5.498 25 C 0.194 3.806 26 C -0.095 4.095 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.280 0.720 35 H 0.153 0.847 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.154 0.846 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.845 -4.801 -4.387 8.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.027 4.027 4 N -0.176 5.176 5 C -0.480 4.480 6 H 0.120 0.880 7 C -0.168 4.168 8 N -0.520 5.520 9 Si 0.739 3.261 10 H -0.178 1.178 11 H -0.215 1.215 12 H -0.195 1.195 13 C 0.309 3.691 14 O -0.488 6.488 15 C -0.172 4.172 16 C -0.026 4.026 17 C -0.139 4.139 18 C -0.064 4.064 19 C -0.169 4.169 20 C 0.109 3.891 21 F -0.112 7.112 22 C -0.171 4.171 23 C 0.023 3.977 24 N -0.208 5.208 25 C 0.042 3.958 26 C -0.152 4.152 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.171 0.829 36 H 0.186 0.814 37 H 0.192 0.808 38 H 0.171 0.829 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.136 -4.184 -5.136 8.382 hybrid contribution -0.765 0.375 0.797 1.167 sum 4.371 -3.809 -4.339 7.242 Atomic orbital electron populations 1.21683 0.93338 1.02951 1.02052 1.21693 0.97436 0.95390 1.01723 1.21853 0.80881 0.98904 1.01071 1.43775 1.04996 1.63597 1.05254 1.19254 1.08772 1.31842 0.88103 0.87995 1.25754 0.98509 0.98083 0.94493 1.69764 1.44444 1.38689 0.99069 0.86375 0.80564 0.80613 0.78547 1.17788 1.21497 1.19502 1.18163 0.86697 0.80596 0.83607 1.90635 1.70042 1.56474 1.31608 1.20717 0.94840 0.99914 1.01763 1.22061 0.93301 0.95476 0.91790 1.19030 0.93732 0.99501 1.01611 1.21234 0.93926 0.95780 0.95506 1.21166 0.94408 1.00457 1.00852 1.17419 0.77010 0.96647 0.97990 1.91522 1.28807 1.95805 1.95047 1.20636 0.91979 1.01175 1.03352 1.18788 0.93913 0.91517 0.93501 1.67746 1.08724 1.22479 1.21836 1.21642 0.88730 0.93696 0.91768 1.20732 0.99276 0.95838 0.99351 0.90624 0.92681 0.92054 0.92572 0.92128 0.91921 0.91178 0.90958 0.82938 0.81421 0.80760 0.82879 0.88877 0.91987 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.91 71.98 0.71 -3.19 16 2 C -0.12 -4.37 6.25 30.59 0.19 -4.18 16 3 C 0.10 3.93 4.13 86.38 0.36 4.28 16 4 N -0.46 -20.90 2.22 -639.07 -1.42 -22.32 16 5 C -0.35 -17.32 8.96 84.10 0.75 -16.57 16 6 H 0.10 5.14 5.00 -2.91 -0.01 5.13 16 7 C 0.04 1.87 5.31 84.96 0.45 2.32 16 8 N -0.88 -46.41 13.95 21.68 0.30 -46.10 16 9 Si 0.91 40.12 24.93 68.60 1.71 41.83 16 10 H -0.25 -10.19 6.66 99.48 0.66 -9.53 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 13 C 0.52 23.48 6.11 86.71 0.53 24.01 16 14 O -0.60 -28.52 15.44 -4.06 -0.06 -28.58 16 15 C -0.17 -6.94 5.06 -20.00 -0.10 -7.04 16 16 C 0.00 0.00 7.55 23.02 0.17 0.17 16 17 C -0.14 -4.48 5.74 -21.28 -0.12 -4.60 16 18 C -0.05 -1.13 9.77 22.34 0.22 -0.91 16 19 C -0.15 -3.21 9.93 22.09 0.22 -2.99 16 20 C 0.13 3.20 7.23 22.17 0.16 3.36 16 21 F -0.13 -3.11 17.24 44.97 0.78 -2.33 16 22 C -0.15 -4.31 9.93 22.37 0.22 -4.09 16 23 C 0.14 4.96 6.61 40.26 0.27 5.22 16 24 N -0.50 -18.56 10.20 -175.84 -1.79 -20.35 16 25 C 0.19 7.58 6.82 43.29 0.30 7.88 16 26 C -0.09 -3.28 9.20 71.24 0.66 -2.63 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 2.64 3.07 -2.39 -0.01 2.63 16 33 H 0.07 2.88 7.44 -2.38 -0.02 2.86 16 34 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 35 H 0.15 5.43 7.16 -2.91 -0.02 5.40 16 36 H 0.17 3.22 8.06 -2.91 -0.02 3.19 16 37 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.15 3.94 8.06 -2.92 -0.02 3.92 16 39 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.06 2.36 6.76 -2.39 -0.02 2.34 16 41 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 Total: -1.00 -59.64 342.26 5.52 -54.12 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 1.02 Total: 22.69 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 4.98 Total: 1.05 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -2.91 Total: -88.78 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.06 Total: -28.58 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.71 Total: 41.83 kcal Total: -59.64 5.52 -54.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299056066.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.515 kcal (2) G-P(sol) polarization free energy of solvation -59.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds