Wall clock time and date at job start Tue Mar 31 2020 11:33:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.34890 * 120.00101 * 2 1
4 4 C 1.46338 * 120.00248 * 5.68883 * 3 2 1
5 5 O 1.21710 * 119.99469 * 5.56046 * 4 3 2
6 6 N 1.34774 * 120.00285 * 185.55787 * 4 3 2
7 7 C 1.46503 * 119.99810 * 179.97438 * 6 4 3
8 8 C 1.50693 * 109.47157 * 90.00445 * 7 6 4
9 9 H 1.08004 * 120.00080 * 359.97438 * 8 7 6
10 10 C 1.37880 * 120.00086 * 179.97438 * 8 7 6
11 11 N 1.31522 * 119.99897 * 180.02562 * 10 8 7
12 12 Si 1.86798 * 119.99946 * 359.97438 * 10 8 7
13 13 H 1.48498 * 109.46719 * 90.00572 * 12 10 8
14 14 H 1.48499 * 109.46755 * 210.00080 * 12 10 8
15 15 H 1.48500 * 109.47280 * 330.00331 * 12 10 8
16 16 C 1.46502 * 119.99990 * 0.02562 * 6 4 3
17 17 C 1.52999 * 109.47058 * 89.99521 * 16 6 4
18 18 C 1.47201 * 109.47019 * 179.97438 * 17 16 6
19 19 N 6.45860 * 139.08382 * 328.92322 * 2 1 3
20 20 C 1.47113 * 119.99933 * 180.02562 * 2 1 3
21 21 C 1.39903 * 120.14111 * 115.26920 * 20 2 1
22 22 C 1.37788 * 119.85072 * 180.25173 * 21 20 2
23 23 C 1.38689 * 120.14493 * 359.49770 * 22 21 20
24 24 F 1.35095 * 119.85915 * 180.25327 * 23 22 21
25 25 C 1.38692 * 120.28886 * 0.23603 * 23 22 21
26 26 C 1.37784 * 120.14638 * 0.02562 * 25 23 22
27 27 H 1.09001 * 109.47696 * 174.79116 * 1 2 3
28 28 H 1.09004 * 109.47217 * 294.78913 * 1 2 3
29 29 H 1.09002 * 109.47260 * 54.79142 * 1 2 3
30 30 H 1.08000 * 120.00017 * 185.68692 * 3 2 1
31 31 H 1.09004 * 109.46934 * 209.99816 * 7 6 4
32 32 H 1.08995 * 109.47488 * 330.00204 * 7 6 4
33 33 H 0.96992 * 119.99915 * 179.97438 * 11 10 8
34 34 H 1.08998 * 109.46689 * 209.99916 * 16 6 4
35 35 H 1.09004 * 109.46784 * 329.99319 * 16 6 4
36 36 H 1.08994 * 109.47269 * 300.00043 * 17 16 6
37 37 H 1.09003 * 109.46870 * 60.00665 * 17 16 6
38 38 H 1.08001 * 120.07528 * 0.03000 * 21 20 2
39 39 H 1.07998 * 119.93033 * 179.77644 * 22 21 20
40 40 H 1.08003 * 119.92524 * 180.02562 * 25 23 22
41 41 H 1.08003 * 120.07595 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1814 1.1682 0.0000
4 6 1.4552 2.4324 0.1256
5 8 0.2556 2.4272 0.3315
6 7 2.1146 3.6024 0.0134
7 6 1.3874 4.8681 0.1386
8 6 1.3779 5.3012 1.5819
9 1 1.8645 4.6943 2.3312
10 6 0.7480 6.4724 1.9461
11 7 0.7401 6.8507 3.2057
12 14 -0.0930 7.5226 0.6502
13 1 -1.5086 7.0963 0.5100
14 1 -0.0439 8.9488 1.0607
15 1 0.6049 7.3574 -0.6502
16 6 3.5584 3.6086 -0.2349
17 6 3.8166 3.6121 -1.7430
18 6 5.2672 3.6190 -1.9924
19 7 6.3875 3.6230 -2.1835
20 6 2.2425 -1.2740 -0.0006
21 6 3.0410 -1.6237 -1.0948
22 6 3.7232 -2.8208 -1.0913
23 6 3.6279 -3.6736 -0.0017
24 9 4.3033 -4.8436 -0.0022
25 6 2.8424 -3.3304 1.0886
26 6 2.1508 -2.1387 1.0954
27 1 -0.3634 -1.0234 -0.0933
28 1 -0.3634 0.4309 0.9330
29 1 -0.3634 0.5925 -0.8397
30 1 3.2574 1.1705 -0.0927
31 1 1.8783 5.6305 -0.4663
32 1 0.3625 4.7340 -0.2072
33 1 0.2973 7.6748 3.4618
34 1 4.0000 4.4997 0.2115
35 1 4.0072 2.7197 0.2085
36 1 3.3750 2.7212 -2.1892
37 1 3.3679 4.5012 -2.1863
38 1 3.1197 -0.9585 -1.9420
39 1 4.3371 -3.0937 -1.9369
40 1 2.7727 -3.9987 1.9341
41 1 1.5398 -1.8723 1.9452
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000299355722.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:33:30
Heat of formation + Delta-G solvation = -9.973217 kcal
Electronic energy + Delta-G solvation = -25091.486386 eV
Core-core repulsion = 21272.559457 eV
Total energy + Delta-G solvation = -3818.926929 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.133 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-49.15289 -39.81564 -39.04047 -36.97160 -35.60317 -34.54055 -32.79743 -31.49520
-31.03404 -29.81762 -28.67093 -26.99484 -24.15115 -23.77101 -23.20463 -22.36798
-19.96544 -18.17426 -17.88329 -17.64305 -17.02291 -16.83135 -16.50170 -15.85898
-15.72713 -15.24262 -14.74112 -14.59220 -14.43943 -13.99502 -13.87827 -13.77419
-13.48111 -13.41002 -13.23232 -12.70021 -12.56149 -12.51832 -12.41748 -12.20778
-11.86852 -11.75285 -11.66347 -11.52313 -11.32801 -11.06866 -10.83843 -10.57565
-10.23124 -9.59941 -9.44985 -9.35321 -9.03007 -8.63843 -8.61276 -7.87454
-6.13196 -4.12823 0.65276 0.94755 1.50266 2.68055 2.75623 3.24590
3.25591 3.30463 3.32972 3.55338 3.72396 3.96684 4.12435 4.34640
4.45282 4.48813 4.56074 4.89309 4.92880 5.03269 5.08278 5.11181
5.17357 5.27760 5.39166 5.54198 5.60686 5.72537 5.74706 5.81562
5.84656 5.94905 6.00809 6.11981 6.15818 6.41266 6.50525 6.59753
6.65967 6.87607 7.19524 7.51785 7.54529 8.08746 8.40573 8.82171
8.91613 9.46276 11.00109
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.014171 B = 0.003326 C = 0.002885
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1975.355020 B = 8415.950050 C = 9704.554311
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.012 4.012
3 C -0.202 4.202
4 C 0.540 3.460
5 O -0.529 6.529
6 N -0.588 5.588
7 C 0.215 3.785
8 C -0.531 4.531
9 H 0.075 0.925
10 C 0.073 3.927
11 N -0.896 5.896
12 Si 0.875 3.125
13 H -0.274 1.274
14 H -0.286 1.286
15 H -0.265 1.265
16 C 0.117 3.883
17 C -0.050 4.050
18 C 0.215 3.785
19 N -0.443 5.443
20 C -0.061 4.061
21 C -0.077 4.077
22 C -0.152 4.152
23 C 0.095 3.905
24 F -0.142 7.142
25 C -0.151 4.151
26 C -0.072 4.072
27 H 0.049 0.951
28 H 0.092 0.908
29 H 0.082 0.918
30 H 0.126 0.874
31 H 0.032 0.968
32 H 0.040 0.960
33 H 0.265 0.735
34 H 0.095 0.905
35 H 0.080 0.920
36 H 0.108 0.892
37 H 0.115 0.885
38 H 0.136 0.864
39 H 0.136 0.864
40 H 0.137 0.863
41 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.715 -17.451 -9.642 20.281
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.013 4.013
3 C -0.223 4.223
4 C 0.330 3.670
5 O -0.408 6.408
6 N -0.318 5.318
7 C 0.095 3.905
8 C -0.569 4.569
9 H 0.093 0.907
10 C -0.130 4.130
11 N -0.534 5.534
12 Si 0.702 3.298
13 H -0.199 1.199
14 H -0.212 1.212
15 H -0.190 1.190
16 C -0.009 4.009
17 C -0.092 4.092
18 C -0.103 4.103
19 N -0.120 5.120
20 C -0.062 4.062
21 C -0.095 4.095
22 C -0.171 4.171
23 C 0.075 3.925
24 F -0.120 7.120
25 C -0.170 4.170
26 C -0.090 4.090
27 H 0.068 0.932
28 H 0.110 0.890
29 H 0.100 0.900
30 H 0.144 0.856
31 H 0.050 0.950
32 H 0.058 0.942
33 H 0.075 0.925
34 H 0.114 0.886
35 H 0.099 0.901
36 H 0.126 0.874
37 H 0.133 0.867
38 H 0.154 0.846
39 H 0.154 0.846
40 H 0.155 0.845
41 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges 4.704 -17.301 -9.686 20.378
hybrid contribution -0.517 0.491 -0.393 0.815
sum 4.186 -16.809 -10.080 20.042
Atomic orbital electron populations
1.20973 0.89635 1.00858 1.04997 1.20978 0.96328 0.90545 0.93497
1.23046 1.00163 0.92380 1.06726 1.18076 0.87127 0.83763 0.78009
1.90794 1.14577 1.87126 1.48258 1.47768 1.07043 1.07399 1.69592
1.19717 0.92795 0.79826 0.98179 1.21314 1.36227 1.07405 0.91999
0.90667 1.24864 0.95534 0.97342 0.95232 1.69894 1.43760 1.23671
1.16099 0.86869 0.80838 0.79858 0.82204 1.19906 1.21153 1.18975
1.21356 0.83216 1.04710 0.91653 1.19904 0.82588 1.06296 1.00387
1.29101 0.95062 0.92893 0.93206 1.81238 1.12761 1.09253 1.08775
1.19063 0.97699 0.94609 0.94790 1.21217 0.94721 0.95675 0.97913
1.21073 1.02615 0.95018 0.98393 1.17892 0.95359 0.83000 0.96203
1.91497 1.78184 1.45526 1.96813 1.21085 0.98913 0.98632 0.98346
1.21176 0.97866 0.92127 0.97872 0.93195 0.88982 0.89953 0.85579
0.95038 0.94185 0.92516 0.88626 0.90139 0.87372 0.86734 0.84574
0.84577 0.84483 0.84387
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.35 8.32 36.00 0.30 -1.05 16
2 C -0.01 -0.14 5.48 -102.21 -0.56 -0.70 16
3 C -0.20 -2.60 8.86 -37.51 -0.33 -2.93 16
4 C 0.54 9.36 7.54 -13.00 -0.10 9.26 16
5 O -0.53 -11.06 12.82 5.18 0.07 -10.99 16
6 N -0.59 -10.17 2.46 -176.73 -0.43 -10.61 16
7 C 0.22 4.64 4.23 -5.20 -0.02 4.61 16
8 C -0.53 -14.19 9.94 -34.44 -0.34 -14.53 16
9 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16
10 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16
11 N -0.90 -26.66 13.96 55.43 0.77 -25.88 16
12 Si 0.88 20.34 27.47 -169.99 -4.67 15.68 16
13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
15 H -0.27 -5.66 6.54 56.52 0.37 -5.29 16
16 C 0.12 1.49 5.11 -4.04 -0.02 1.47 16
17 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16
18 C 0.22 2.46 15.43 -20.75 -0.32 2.14 16
19 N -0.44 -6.29 18.54 42.17 0.78 -5.51 16
20 C -0.06 -0.62 5.24 -105.05 -0.55 -1.17 16
21 C -0.08 -0.68 9.72 -39.12 -0.38 -1.06 16
22 C -0.15 -1.31 10.01 -39.58 -0.40 -1.71 16
23 C 0.09 0.91 7.31 -39.25 -0.29 0.62 16
24 F -0.14 -1.46 17.26 2.25 0.04 -1.42 16
25 C -0.15 -1.35 10.01 -39.58 -0.40 -1.74 16
26 C -0.07 -0.68 9.78 -39.13 -0.38 -1.06 16
27 H 0.05 0.51 7.99 -51.93 -0.42 0.10 16
28 H 0.09 1.35 7.12 -51.93 -0.37 0.98 16
29 H 0.08 1.10 7.43 -51.93 -0.39 0.72 16
30 H 0.13 1.33 6.15 -52.49 -0.32 1.00 16
31 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16
32 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16
33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
34 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16
35 H 0.08 0.89 6.03 -51.93 -0.31 0.58 16
36 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16
37 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16
38 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16
39 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16
40 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16
41 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16
LS Contribution 363.37 15.07 5.48 5.48
Total: -1.00 -32.96 363.37 -7.11 -40.07
By element:
Atomic # 1 Polarization: 4.85 SS G_CDS: -5.08 Total: -0.23 kcal
Atomic # 6 Polarization: -2.51 SS G_CDS: -4.06 Total: -6.58 kcal
Atomic # 7 Polarization: -43.12 SS G_CDS: 1.12 Total: -42.00 kcal
Atomic # 8 Polarization: -11.06 SS G_CDS: 0.07 Total: -10.99 kcal
Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal
Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.68 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -32.96 -7.11 -40.07 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299355722.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.097 kcal
(2) G-P(sol) polarization free energy of solvation -32.963 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.866 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.973 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds