Wall clock time and date at job start Tue Mar 31 2020 11:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34890 * 120.00101 * 2 1 4 4 C 1.46338 * 120.00248 * 5.68883 * 3 2 1 5 5 O 1.21710 * 119.99469 * 5.56046 * 4 3 2 6 6 N 1.34774 * 120.00285 * 185.55787 * 4 3 2 7 7 C 1.46503 * 119.99810 * 179.97438 * 6 4 3 8 8 C 1.50693 * 109.47157 * 90.00445 * 7 6 4 9 9 H 1.08004 * 120.00080 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00086 * 179.97438 * 8 7 6 11 11 N 1.31522 * 119.99897 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99946 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46719 * 90.00572 * 12 10 8 14 14 H 1.48499 * 109.46755 * 210.00080 * 12 10 8 15 15 H 1.48500 * 109.47280 * 330.00331 * 12 10 8 16 16 C 1.46502 * 119.99990 * 0.02562 * 6 4 3 17 17 C 1.52999 * 109.47058 * 89.99521 * 16 6 4 18 18 C 1.47201 * 109.47019 * 179.97438 * 17 16 6 19 19 N 6.45860 * 139.08382 * 328.92322 * 2 1 3 20 20 C 1.47113 * 119.99933 * 180.02562 * 2 1 3 21 21 C 1.39903 * 120.14111 * 115.26920 * 20 2 1 22 22 C 1.37788 * 119.85072 * 180.25173 * 21 20 2 23 23 C 1.38689 * 120.14493 * 359.49770 * 22 21 20 24 24 F 1.35095 * 119.85915 * 180.25327 * 23 22 21 25 25 C 1.38692 * 120.28886 * 0.23603 * 23 22 21 26 26 C 1.37784 * 120.14638 * 0.02562 * 25 23 22 27 27 H 1.09001 * 109.47696 * 174.79116 * 1 2 3 28 28 H 1.09004 * 109.47217 * 294.78913 * 1 2 3 29 29 H 1.09002 * 109.47260 * 54.79142 * 1 2 3 30 30 H 1.08000 * 120.00017 * 185.68692 * 3 2 1 31 31 H 1.09004 * 109.46934 * 209.99816 * 7 6 4 32 32 H 1.08995 * 109.47488 * 330.00204 * 7 6 4 33 33 H 0.96992 * 119.99915 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.46689 * 209.99916 * 16 6 4 35 35 H 1.09004 * 109.46784 * 329.99319 * 16 6 4 36 36 H 1.08994 * 109.47269 * 300.00043 * 17 16 6 37 37 H 1.09003 * 109.46870 * 60.00665 * 17 16 6 38 38 H 1.08001 * 120.07528 * 0.03000 * 21 20 2 39 39 H 1.07998 * 119.93033 * 179.77644 * 22 21 20 40 40 H 1.08003 * 119.92524 * 180.02562 * 25 23 22 41 41 H 1.08003 * 120.07595 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1814 1.1682 0.0000 4 6 1.4552 2.4324 0.1256 5 8 0.2556 2.4272 0.3315 6 7 2.1146 3.6024 0.0134 7 6 1.3874 4.8681 0.1386 8 6 1.3779 5.3012 1.5819 9 1 1.8645 4.6943 2.3312 10 6 0.7480 6.4724 1.9461 11 7 0.7401 6.8507 3.2057 12 14 -0.0930 7.5226 0.6502 13 1 -1.5086 7.0963 0.5100 14 1 -0.0439 8.9488 1.0607 15 1 0.6049 7.3574 -0.6502 16 6 3.5584 3.6086 -0.2349 17 6 3.8166 3.6121 -1.7430 18 6 5.2672 3.6190 -1.9924 19 7 6.3875 3.6230 -2.1835 20 6 2.2425 -1.2740 -0.0006 21 6 3.0410 -1.6237 -1.0948 22 6 3.7232 -2.8208 -1.0913 23 6 3.6279 -3.6736 -0.0017 24 9 4.3033 -4.8436 -0.0022 25 6 2.8424 -3.3304 1.0886 26 6 2.1508 -2.1387 1.0954 27 1 -0.3634 -1.0234 -0.0933 28 1 -0.3634 0.4309 0.9330 29 1 -0.3634 0.5925 -0.8397 30 1 3.2574 1.1705 -0.0927 31 1 1.8783 5.6305 -0.4663 32 1 0.3625 4.7340 -0.2072 33 1 0.2973 7.6748 3.4618 34 1 4.0000 4.4997 0.2115 35 1 4.0072 2.7197 0.2085 36 1 3.3750 2.7212 -2.1892 37 1 3.3679 4.5012 -2.1863 38 1 3.1197 -0.9585 -1.9420 39 1 4.3371 -3.0937 -1.9369 40 1 2.7727 -3.9987 1.9341 41 1 1.5398 -1.8723 1.9452 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299355722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:30 Heat of formation + Delta-G solvation = -9.973217 kcal Electronic energy + Delta-G solvation = -25091.486386 eV Core-core repulsion = 21272.559457 eV Total energy + Delta-G solvation = -3818.926929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.15289 -39.81564 -39.04047 -36.97160 -35.60317 -34.54055 -32.79743 -31.49520 -31.03404 -29.81762 -28.67093 -26.99484 -24.15115 -23.77101 -23.20463 -22.36798 -19.96544 -18.17426 -17.88329 -17.64305 -17.02291 -16.83135 -16.50170 -15.85898 -15.72713 -15.24262 -14.74112 -14.59220 -14.43943 -13.99502 -13.87827 -13.77419 -13.48111 -13.41002 -13.23232 -12.70021 -12.56149 -12.51832 -12.41748 -12.20778 -11.86852 -11.75285 -11.66347 -11.52313 -11.32801 -11.06866 -10.83843 -10.57565 -10.23124 -9.59941 -9.44985 -9.35321 -9.03007 -8.63843 -8.61276 -7.87454 -6.13196 -4.12823 0.65276 0.94755 1.50266 2.68055 2.75623 3.24590 3.25591 3.30463 3.32972 3.55338 3.72396 3.96684 4.12435 4.34640 4.45282 4.48813 4.56074 4.89309 4.92880 5.03269 5.08278 5.11181 5.17357 5.27760 5.39166 5.54198 5.60686 5.72537 5.74706 5.81562 5.84656 5.94905 6.00809 6.11981 6.15818 6.41266 6.50525 6.59753 6.65967 6.87607 7.19524 7.51785 7.54529 8.08746 8.40573 8.82171 8.91613 9.46276 11.00109 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003326 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.355020 B = 8415.950050 C = 9704.554311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.012 4.012 3 C -0.202 4.202 4 C 0.540 3.460 5 O -0.529 6.529 6 N -0.588 5.588 7 C 0.215 3.785 8 C -0.531 4.531 9 H 0.075 0.925 10 C 0.073 3.927 11 N -0.896 5.896 12 Si 0.875 3.125 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.265 1.265 16 C 0.117 3.883 17 C -0.050 4.050 18 C 0.215 3.785 19 N -0.443 5.443 20 C -0.061 4.061 21 C -0.077 4.077 22 C -0.152 4.152 23 C 0.095 3.905 24 F -0.142 7.142 25 C -0.151 4.151 26 C -0.072 4.072 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.715 -17.451 -9.642 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.013 4.013 3 C -0.223 4.223 4 C 0.330 3.670 5 O -0.408 6.408 6 N -0.318 5.318 7 C 0.095 3.905 8 C -0.569 4.569 9 H 0.093 0.907 10 C -0.130 4.130 11 N -0.534 5.534 12 Si 0.702 3.298 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.190 1.190 16 C -0.009 4.009 17 C -0.092 4.092 18 C -0.103 4.103 19 N -0.120 5.120 20 C -0.062 4.062 21 C -0.095 4.095 22 C -0.171 4.171 23 C 0.075 3.925 24 F -0.120 7.120 25 C -0.170 4.170 26 C -0.090 4.090 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.144 0.856 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.704 -17.301 -9.686 20.378 hybrid contribution -0.517 0.491 -0.393 0.815 sum 4.186 -16.809 -10.080 20.042 Atomic orbital electron populations 1.20973 0.89635 1.00858 1.04997 1.20978 0.96328 0.90545 0.93497 1.23046 1.00163 0.92380 1.06726 1.18076 0.87127 0.83763 0.78009 1.90794 1.14577 1.87126 1.48258 1.47768 1.07043 1.07399 1.69592 1.19717 0.92795 0.79826 0.98179 1.21314 1.36227 1.07405 0.91999 0.90667 1.24864 0.95534 0.97342 0.95232 1.69894 1.43760 1.23671 1.16099 0.86869 0.80838 0.79858 0.82204 1.19906 1.21153 1.18975 1.21356 0.83216 1.04710 0.91653 1.19904 0.82588 1.06296 1.00387 1.29101 0.95062 0.92893 0.93206 1.81238 1.12761 1.09253 1.08775 1.19063 0.97699 0.94609 0.94790 1.21217 0.94721 0.95675 0.97913 1.21073 1.02615 0.95018 0.98393 1.17892 0.95359 0.83000 0.96203 1.91497 1.78184 1.45526 1.96813 1.21085 0.98913 0.98632 0.98346 1.21176 0.97866 0.92127 0.97872 0.93195 0.88982 0.89953 0.85579 0.95038 0.94185 0.92516 0.88626 0.90139 0.87372 0.86734 0.84574 0.84577 0.84483 0.84387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 8.32 36.00 0.30 -1.05 16 2 C -0.01 -0.14 5.48 -102.21 -0.56 -0.70 16 3 C -0.20 -2.60 8.86 -37.51 -0.33 -2.93 16 4 C 0.54 9.36 7.54 -13.00 -0.10 9.26 16 5 O -0.53 -11.06 12.82 5.18 0.07 -10.99 16 6 N -0.59 -10.17 2.46 -176.73 -0.43 -10.61 16 7 C 0.22 4.64 4.23 -5.20 -0.02 4.61 16 8 C -0.53 -14.19 9.94 -34.44 -0.34 -14.53 16 9 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 10 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 11 N -0.90 -26.66 13.96 55.43 0.77 -25.88 16 12 Si 0.88 20.34 27.47 -169.99 -4.67 15.68 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.27 -5.66 6.54 56.52 0.37 -5.29 16 16 C 0.12 1.49 5.11 -4.04 -0.02 1.47 16 17 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16 18 C 0.22 2.46 15.43 -20.75 -0.32 2.14 16 19 N -0.44 -6.29 18.54 42.17 0.78 -5.51 16 20 C -0.06 -0.62 5.24 -105.05 -0.55 -1.17 16 21 C -0.08 -0.68 9.72 -39.12 -0.38 -1.06 16 22 C -0.15 -1.31 10.01 -39.58 -0.40 -1.71 16 23 C 0.09 0.91 7.31 -39.25 -0.29 0.62 16 24 F -0.14 -1.46 17.26 2.25 0.04 -1.42 16 25 C -0.15 -1.35 10.01 -39.58 -0.40 -1.74 16 26 C -0.07 -0.68 9.78 -39.13 -0.38 -1.06 16 27 H 0.05 0.51 7.99 -51.93 -0.42 0.10 16 28 H 0.09 1.35 7.12 -51.93 -0.37 0.98 16 29 H 0.08 1.10 7.43 -51.93 -0.39 0.72 16 30 H 0.13 1.33 6.15 -52.49 -0.32 1.00 16 31 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 32 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 35 H 0.08 0.89 6.03 -51.93 -0.31 0.58 16 36 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -32.96 363.37 -7.11 -40.07 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.08 Total: -0.23 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -4.06 Total: -6.58 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 1.12 Total: -42.00 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.07 Total: -10.99 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.96 -7.11 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299355722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.097 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds