Wall clock time and date at job start Tue Mar 31 2020 11:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34890 * 120.00101 * 2 1 4 4 C 1.46338 * 120.00248 * 5.68883 * 3 2 1 5 5 O 1.21710 * 119.99469 * 5.56046 * 4 3 2 6 6 N 1.34774 * 120.00285 * 185.55787 * 4 3 2 7 7 C 1.46503 * 119.99810 * 179.97438 * 6 4 3 8 8 C 1.50693 * 109.47157 * 90.00445 * 7 6 4 9 9 H 1.08004 * 120.00080 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00086 * 179.97438 * 8 7 6 11 11 N 1.31522 * 119.99897 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99946 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46719 * 90.00572 * 12 10 8 14 14 H 1.48499 * 109.46755 * 210.00080 * 12 10 8 15 15 H 1.48500 * 109.47280 * 330.00331 * 12 10 8 16 16 C 1.46502 * 119.99990 * 0.02562 * 6 4 3 17 17 C 1.52999 * 109.47058 * 89.99521 * 16 6 4 18 18 C 1.47201 * 109.47019 * 179.97438 * 17 16 6 19 19 N 6.45860 * 139.08382 * 328.92322 * 2 1 3 20 20 C 1.47113 * 119.99933 * 180.02562 * 2 1 3 21 21 C 1.39903 * 120.14111 * 115.26920 * 20 2 1 22 22 C 1.37788 * 119.85072 * 180.25173 * 21 20 2 23 23 C 1.38689 * 120.14493 * 359.49770 * 22 21 20 24 24 F 1.35095 * 119.85915 * 180.25327 * 23 22 21 25 25 C 1.38692 * 120.28886 * 0.23603 * 23 22 21 26 26 C 1.37784 * 120.14638 * 0.02562 * 25 23 22 27 27 H 1.09001 * 109.47696 * 174.79116 * 1 2 3 28 28 H 1.09004 * 109.47217 * 294.78913 * 1 2 3 29 29 H 1.09002 * 109.47260 * 54.79142 * 1 2 3 30 30 H 1.08000 * 120.00017 * 185.68692 * 3 2 1 31 31 H 1.09004 * 109.46934 * 209.99816 * 7 6 4 32 32 H 1.08995 * 109.47488 * 330.00204 * 7 6 4 33 33 H 0.96992 * 119.99915 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.46689 * 209.99916 * 16 6 4 35 35 H 1.09004 * 109.46784 * 329.99319 * 16 6 4 36 36 H 1.08994 * 109.47269 * 300.00043 * 17 16 6 37 37 H 1.09003 * 109.46870 * 60.00665 * 17 16 6 38 38 H 1.08001 * 120.07528 * 0.03000 * 21 20 2 39 39 H 1.07998 * 119.93033 * 179.77644 * 22 21 20 40 40 H 1.08003 * 119.92524 * 180.02562 * 25 23 22 41 41 H 1.08003 * 120.07595 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1814 1.1682 0.0000 4 6 1.4552 2.4324 0.1256 5 8 0.2556 2.4272 0.3315 6 7 2.1146 3.6024 0.0134 7 6 1.3874 4.8681 0.1386 8 6 1.3779 5.3012 1.5819 9 1 1.8645 4.6943 2.3312 10 6 0.7480 6.4724 1.9461 11 7 0.7401 6.8507 3.2057 12 14 -0.0930 7.5226 0.6502 13 1 -1.5086 7.0963 0.5100 14 1 -0.0439 8.9488 1.0607 15 1 0.6049 7.3574 -0.6502 16 6 3.5584 3.6086 -0.2349 17 6 3.8166 3.6121 -1.7430 18 6 5.2672 3.6190 -1.9924 19 7 6.3875 3.6230 -2.1835 20 6 2.2425 -1.2740 -0.0006 21 6 3.0410 -1.6237 -1.0948 22 6 3.7232 -2.8208 -1.0913 23 6 3.6279 -3.6736 -0.0017 24 9 4.3033 -4.8436 -0.0022 25 6 2.8424 -3.3304 1.0886 26 6 2.1508 -2.1387 1.0954 27 1 -0.3634 -1.0234 -0.0933 28 1 -0.3634 0.4309 0.9330 29 1 -0.3634 0.5925 -0.8397 30 1 3.2574 1.1705 -0.0927 31 1 1.8783 5.6305 -0.4663 32 1 0.3625 4.7340 -0.2072 33 1 0.2973 7.6748 3.4618 34 1 4.0000 4.4997 0.2115 35 1 4.0072 2.7197 0.2085 36 1 3.3750 2.7212 -2.1892 37 1 3.3679 4.5012 -2.1863 38 1 3.1197 -0.9585 -1.9420 39 1 4.3371 -3.0937 -1.9369 40 1 2.7727 -3.9987 1.9341 41 1 1.5398 -1.8723 1.9452 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299355722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:29 Heat of formation + Delta-G solvation = -28.183229 kcal Electronic energy + Delta-G solvation = -25092.276031 eV Core-core repulsion = 21272.559457 eV Total energy + Delta-G solvation = -3819.716574 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.89751 -40.97611 -39.93121 -38.01351 -36.83691 -35.59041 -34.74569 -32.31085 -32.16193 -30.78263 -30.00069 -28.30784 -25.22423 -25.04419 -23.89065 -23.66961 -21.10059 -19.30842 -19.06793 -18.62762 -18.42633 -18.12483 -17.26855 -16.90343 -16.57717 -16.34637 -16.13255 -15.72715 -15.48021 -15.20548 -14.85967 -14.68493 -14.50577 -14.35824 -14.24909 -14.22201 -13.75636 -13.62311 -13.53084 -13.32423 -13.15703 -12.90245 -12.75992 -12.65433 -12.43414 -12.35296 -12.00066 -11.94396 -11.79737 -11.65897 -10.74991 -10.45554 -10.27404 -10.10166 -9.50321 -9.27023 -8.25747 -6.30289 -0.13902 0.28939 0.51486 1.40779 1.44539 1.52144 1.74253 1.86983 2.28741 2.38595 2.47507 2.59806 3.09268 3.18138 3.28009 3.55283 3.81918 3.92184 3.98582 4.04700 4.15042 4.26065 4.30481 4.42090 4.58414 4.65735 4.83837 4.88005 4.88929 4.94899 4.99129 5.02891 5.08582 5.15527 5.16639 5.22942 5.36313 5.52036 5.55205 5.59165 5.71117 5.88745 6.32501 6.63481 6.72978 6.76648 7.30340 7.51085 8.91317 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003326 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.355020 B = 8415.950050 C = 9704.554311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.011 3.989 3 C -0.210 4.210 4 C 0.533 3.467 5 O -0.576 6.576 6 N -0.592 5.592 7 C 0.223 3.777 8 C -0.532 4.532 9 H 0.027 0.973 10 C 0.007 3.993 11 N -0.951 5.951 12 Si 0.945 3.055 13 H -0.277 1.277 14 H -0.285 1.285 15 H -0.226 1.226 16 C 0.112 3.888 17 C -0.036 4.036 18 C 0.245 3.755 19 N -0.491 5.491 20 C -0.074 4.074 21 C -0.071 4.071 22 C -0.151 4.151 23 C 0.082 3.918 24 F -0.148 7.148 25 C -0.153 4.153 26 C -0.078 4.078 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.265 0.735 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 -18.502 -12.424 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.009 3.991 3 C -0.230 4.230 4 C 0.326 3.674 5 O -0.458 6.458 6 N -0.322 5.322 7 C 0.101 3.899 8 C -0.571 4.571 9 H 0.046 0.954 10 C -0.190 4.190 11 N -0.592 5.592 12 Si 0.768 3.232 13 H -0.203 1.203 14 H -0.211 1.211 15 H -0.149 1.149 16 C -0.013 4.013 17 C -0.077 4.077 18 C -0.073 4.073 19 N -0.169 5.169 20 C -0.075 4.075 21 C -0.089 4.089 22 C -0.170 4.170 23 C 0.063 3.937 24 F -0.127 7.127 25 C -0.171 4.171 26 C -0.096 4.096 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.173 0.827 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.176 0.824 39 H 0.174 0.826 40 H 0.169 0.831 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.446 -18.379 -12.497 22.883 hybrid contribution -0.740 0.673 0.584 1.158 sum 4.706 -17.706 -11.913 21.853 Atomic orbital electron populations 1.20900 0.90549 1.01735 1.03151 1.21046 0.95846 0.91216 0.90987 1.22900 1.01109 0.90280 1.08732 1.18779 0.86837 0.84986 0.76822 1.90776 1.16758 1.87851 1.50411 1.47722 1.08708 1.06088 1.69641 1.19395 0.93293 0.82411 0.94787 1.21639 1.34882 1.06573 0.93992 0.95447 1.25876 0.96459 0.99129 0.97532 1.70071 1.45670 1.24594 1.18825 0.85752 0.79391 0.77326 0.80710 1.20271 1.21135 1.14894 1.21526 0.80426 1.05102 0.94204 1.19861 0.81426 1.08538 0.97867 1.29231 0.94942 0.91290 0.91796 1.81283 1.14231 1.11106 1.10305 1.18993 0.98641 0.93934 0.95883 1.21418 0.93646 0.95902 0.97912 1.21307 1.02436 0.94604 0.98611 1.18151 0.95583 0.83050 0.96877 1.91484 1.78361 1.45960 1.96881 1.21236 0.98498 0.98631 0.98780 1.21269 0.98069 0.92233 0.98005 0.90967 0.91661 0.90953 0.82714 0.92334 0.95371 0.92577 0.90021 0.88258 0.84294 0.85372 0.82412 0.82633 0.83082 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.62 8.32 71.23 0.59 -2.02 16 2 C 0.01 0.24 5.48 -18.30 -0.10 0.14 16 3 C -0.21 -4.97 8.86 23.61 0.21 -4.76 16 4 C 0.53 18.14 7.54 86.35 0.65 18.79 16 5 O -0.58 -24.53 12.82 -4.38 -0.06 -24.59 16 6 N -0.59 -19.81 2.46 -831.28 -2.04 -21.86 16 7 C 0.22 9.43 4.23 85.63 0.36 9.79 16 8 C -0.53 -29.17 9.94 25.60 0.25 -28.91 16 9 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 10 C 0.01 0.41 5.47 84.65 0.46 0.88 16 11 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 12 Si 0.95 41.75 27.47 68.60 1.88 43.64 16 13 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 15 H -0.23 -8.51 6.54 99.48 0.65 -7.86 16 16 C 0.11 2.61 5.11 86.38 0.44 3.05 16 17 C -0.04 -0.55 6.03 28.79 0.17 -0.38 16 18 C 0.24 4.87 15.43 89.44 1.38 6.25 16 19 N -0.49 -12.98 18.54 20.01 0.37 -12.61 16 20 C -0.07 -1.30 5.24 -20.14 -0.11 -1.41 16 21 C -0.07 -0.99 9.72 22.57 0.22 -0.77 16 22 C -0.15 -2.13 10.01 22.27 0.22 -1.91 16 23 C 0.08 1.39 7.31 22.49 0.16 1.56 16 24 F -0.15 -2.79 17.26 44.97 0.78 -2.01 16 25 C -0.15 -2.42 10.01 22.27 0.22 -2.20 16 26 C -0.08 -1.31 9.78 22.56 0.22 -1.09 16 27 H 0.07 1.39 7.99 -2.39 -0.02 1.37 16 28 H 0.06 1.98 7.12 -2.39 -0.02 1.96 16 29 H 0.07 1.92 7.43 -2.39 -0.02 1.91 16 30 H 0.16 2.71 6.15 -2.91 -0.02 2.69 16 31 H 0.06 2.17 7.13 -2.38 -0.02 2.16 16 32 H 0.03 1.27 6.85 -2.39 -0.02 1.26 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 35 H 0.10 1.94 6.03 -2.39 -0.01 1.92 16 36 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -75.91 363.37 7.60 -68.31 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.00 Total: 10.52 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 5.37 Total: -2.99 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -1.37 Total: -92.88 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.06 Total: -24.59 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.64 kcal Total: -75.91 7.60 -68.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299355722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.126 kcal (2) G-P(sol) polarization free energy of solvation -75.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds