Wall clock time and date at job start Tue Mar 31 2020 11:33:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.34890 * 120.00101 * 2 1
4 4 C 1.46338 * 120.00248 * 5.68883 * 3 2 1
5 5 O 1.21710 * 119.99469 * 5.56046 * 4 3 2
6 6 N 1.34774 * 120.00285 * 185.55787 * 4 3 2
7 7 C 1.46503 * 119.99810 * 179.97438 * 6 4 3
8 8 C 1.50693 * 109.47157 * 90.00445 * 7 6 4
9 9 H 1.08004 * 120.00080 * 359.97438 * 8 7 6
10 10 C 1.37880 * 120.00086 * 179.97438 * 8 7 6
11 11 N 1.31522 * 119.99897 * 180.02562 * 10 8 7
12 12 Si 1.86798 * 119.99946 * 359.97438 * 10 8 7
13 13 H 1.48498 * 109.46719 * 90.00572 * 12 10 8
14 14 H 1.48499 * 109.46755 * 210.00080 * 12 10 8
15 15 H 1.48500 * 109.47280 * 330.00331 * 12 10 8
16 16 C 1.46502 * 119.99990 * 0.02562 * 6 4 3
17 17 C 1.52999 * 109.47058 * 89.99521 * 16 6 4
18 18 C 1.47201 * 109.47019 * 179.97438 * 17 16 6
19 19 N 6.45860 * 139.08382 * 328.92322 * 2 1 3
20 20 C 1.47113 * 119.99933 * 180.02562 * 2 1 3
21 21 C 1.39903 * 120.14111 * 115.26920 * 20 2 1
22 22 C 1.37788 * 119.85072 * 180.25173 * 21 20 2
23 23 C 1.38689 * 120.14493 * 359.49770 * 22 21 20
24 24 F 1.35095 * 119.85915 * 180.25327 * 23 22 21
25 25 C 1.38692 * 120.28886 * 0.23603 * 23 22 21
26 26 C 1.37784 * 120.14638 * 0.02562 * 25 23 22
27 27 H 1.09001 * 109.47696 * 174.79116 * 1 2 3
28 28 H 1.09004 * 109.47217 * 294.78913 * 1 2 3
29 29 H 1.09002 * 109.47260 * 54.79142 * 1 2 3
30 30 H 1.08000 * 120.00017 * 185.68692 * 3 2 1
31 31 H 1.09004 * 109.46934 * 209.99816 * 7 6 4
32 32 H 1.08995 * 109.47488 * 330.00204 * 7 6 4
33 33 H 0.96992 * 119.99915 * 179.97438 * 11 10 8
34 34 H 1.08998 * 109.46689 * 209.99916 * 16 6 4
35 35 H 1.09004 * 109.46784 * 329.99319 * 16 6 4
36 36 H 1.08994 * 109.47269 * 300.00043 * 17 16 6
37 37 H 1.09003 * 109.46870 * 60.00665 * 17 16 6
38 38 H 1.08001 * 120.07528 * 0.03000 * 21 20 2
39 39 H 1.07998 * 119.93033 * 179.77644 * 22 21 20
40 40 H 1.08003 * 119.92524 * 180.02562 * 25 23 22
41 41 H 1.08003 * 120.07595 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1814 1.1682 0.0000
4 6 1.4552 2.4324 0.1256
5 8 0.2556 2.4272 0.3315
6 7 2.1146 3.6024 0.0134
7 6 1.3874 4.8681 0.1386
8 6 1.3779 5.3012 1.5819
9 1 1.8645 4.6943 2.3312
10 6 0.7480 6.4724 1.9461
11 7 0.7401 6.8507 3.2057
12 14 -0.0930 7.5226 0.6502
13 1 -1.5086 7.0963 0.5100
14 1 -0.0439 8.9488 1.0607
15 1 0.6049 7.3574 -0.6502
16 6 3.5584 3.6086 -0.2349
17 6 3.8166 3.6121 -1.7430
18 6 5.2672 3.6190 -1.9924
19 7 6.3875 3.6230 -2.1835
20 6 2.2425 -1.2740 -0.0006
21 6 3.0410 -1.6237 -1.0948
22 6 3.7232 -2.8208 -1.0913
23 6 3.6279 -3.6736 -0.0017
24 9 4.3033 -4.8436 -0.0022
25 6 2.8424 -3.3304 1.0886
26 6 2.1508 -2.1387 1.0954
27 1 -0.3634 -1.0234 -0.0933
28 1 -0.3634 0.4309 0.9330
29 1 -0.3634 0.5925 -0.8397
30 1 3.2574 1.1705 -0.0927
31 1 1.8783 5.6305 -0.4663
32 1 0.3625 4.7340 -0.2072
33 1 0.2973 7.6748 3.4618
34 1 4.0000 4.4997 0.2115
35 1 4.0072 2.7197 0.2085
36 1 3.3750 2.7212 -2.1892
37 1 3.3679 4.5012 -2.1863
38 1 3.1197 -0.9585 -1.9420
39 1 4.3371 -3.0937 -1.9369
40 1 2.7727 -3.9987 1.9341
41 1 1.5398 -1.8723 1.9452
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000299355722.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:33:29
Heat of formation + Delta-G solvation = -28.183229 kcal
Electronic energy + Delta-G solvation = -25092.276031 eV
Core-core repulsion = 21272.559457 eV
Total energy + Delta-G solvation = -3819.716574 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.133 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-49.89751 -40.97611 -39.93121 -38.01351 -36.83691 -35.59041 -34.74569 -32.31085
-32.16193 -30.78263 -30.00069 -28.30784 -25.22423 -25.04419 -23.89065 -23.66961
-21.10059 -19.30842 -19.06793 -18.62762 -18.42633 -18.12483 -17.26855 -16.90343
-16.57717 -16.34637 -16.13255 -15.72715 -15.48021 -15.20548 -14.85967 -14.68493
-14.50577 -14.35824 -14.24909 -14.22201 -13.75636 -13.62311 -13.53084 -13.32423
-13.15703 -12.90245 -12.75992 -12.65433 -12.43414 -12.35296 -12.00066 -11.94396
-11.79737 -11.65897 -10.74991 -10.45554 -10.27404 -10.10166 -9.50321 -9.27023
-8.25747 -6.30289 -0.13902 0.28939 0.51486 1.40779 1.44539 1.52144
1.74253 1.86983 2.28741 2.38595 2.47507 2.59806 3.09268 3.18138
3.28009 3.55283 3.81918 3.92184 3.98582 4.04700 4.15042 4.26065
4.30481 4.42090 4.58414 4.65735 4.83837 4.88005 4.88929 4.94899
4.99129 5.02891 5.08582 5.15527 5.16639 5.22942 5.36313 5.52036
5.55205 5.59165 5.71117 5.88745 6.32501 6.63481 6.72978 6.76648
7.30340 7.51085 8.91317
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.014171 B = 0.003326 C = 0.002885
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1975.355020 B = 8415.950050 C = 9704.554311
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C 0.011 3.989
3 C -0.210 4.210
4 C 0.533 3.467
5 O -0.576 6.576
6 N -0.592 5.592
7 C 0.223 3.777
8 C -0.532 4.532
9 H 0.027 0.973
10 C 0.007 3.993
11 N -0.951 5.951
12 Si 0.945 3.055
13 H -0.277 1.277
14 H -0.285 1.285
15 H -0.226 1.226
16 C 0.112 3.888
17 C -0.036 4.036
18 C 0.245 3.755
19 N -0.491 5.491
20 C -0.074 4.074
21 C -0.071 4.071
22 C -0.151 4.151
23 C 0.082 3.918
24 F -0.148 7.148
25 C -0.153 4.153
26 C -0.078 4.078
27 H 0.071 0.929
28 H 0.065 0.935
29 H 0.072 0.928
30 H 0.155 0.845
31 H 0.059 0.941
32 H 0.028 0.972
33 H 0.265 0.735
34 H 0.081 0.919
35 H 0.099 0.901
36 H 0.139 0.861
37 H 0.128 0.872
38 H 0.158 0.842
39 H 0.156 0.844
40 H 0.151 0.849
41 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.403 -18.502 -12.424 22.717
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.009 3.991
3 C -0.230 4.230
4 C 0.326 3.674
5 O -0.458 6.458
6 N -0.322 5.322
7 C 0.101 3.899
8 C -0.571 4.571
9 H 0.046 0.954
10 C -0.190 4.190
11 N -0.592 5.592
12 Si 0.768 3.232
13 H -0.203 1.203
14 H -0.211 1.211
15 H -0.149 1.149
16 C -0.013 4.013
17 C -0.077 4.077
18 C -0.073 4.073
19 N -0.169 5.169
20 C -0.075 4.075
21 C -0.089 4.089
22 C -0.170 4.170
23 C 0.063 3.937
24 F -0.127 7.127
25 C -0.171 4.171
26 C -0.096 4.096
27 H 0.090 0.910
28 H 0.083 0.917
29 H 0.090 0.910
30 H 0.173 0.827
31 H 0.077 0.923
32 H 0.046 0.954
33 H 0.074 0.926
34 H 0.100 0.900
35 H 0.117 0.883
36 H 0.157 0.843
37 H 0.146 0.854
38 H 0.176 0.824
39 H 0.174 0.826
40 H 0.169 0.831
41 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 5.446 -18.379 -12.497 22.883
hybrid contribution -0.740 0.673 0.584 1.158
sum 4.706 -17.706 -11.913 21.853
Atomic orbital electron populations
1.20900 0.90549 1.01735 1.03151 1.21046 0.95846 0.91216 0.90987
1.22900 1.01109 0.90280 1.08732 1.18779 0.86837 0.84986 0.76822
1.90776 1.16758 1.87851 1.50411 1.47722 1.08708 1.06088 1.69641
1.19395 0.93293 0.82411 0.94787 1.21639 1.34882 1.06573 0.93992
0.95447 1.25876 0.96459 0.99129 0.97532 1.70071 1.45670 1.24594
1.18825 0.85752 0.79391 0.77326 0.80710 1.20271 1.21135 1.14894
1.21526 0.80426 1.05102 0.94204 1.19861 0.81426 1.08538 0.97867
1.29231 0.94942 0.91290 0.91796 1.81283 1.14231 1.11106 1.10305
1.18993 0.98641 0.93934 0.95883 1.21418 0.93646 0.95902 0.97912
1.21307 1.02436 0.94604 0.98611 1.18151 0.95583 0.83050 0.96877
1.91484 1.78361 1.45960 1.96881 1.21236 0.98498 0.98631 0.98780
1.21269 0.98069 0.92233 0.98005 0.90967 0.91661 0.90953 0.82714
0.92334 0.95371 0.92577 0.90021 0.88258 0.84294 0.85372 0.82412
0.82633 0.83082 0.83980
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.62 8.32 71.23 0.59 -2.02 16
2 C 0.01 0.24 5.48 -18.30 -0.10 0.14 16
3 C -0.21 -4.97 8.86 23.61 0.21 -4.76 16
4 C 0.53 18.14 7.54 86.35 0.65 18.79 16
5 O -0.58 -24.53 12.82 -4.38 -0.06 -24.59 16
6 N -0.59 -19.81 2.46 -831.28 -2.04 -21.86 16
7 C 0.22 9.43 4.23 85.63 0.36 9.79 16
8 C -0.53 -29.17 9.94 25.60 0.25 -28.91 16
9 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16
10 C 0.01 0.41 5.47 84.65 0.46 0.88 16
11 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16
12 Si 0.95 41.75 27.47 68.60 1.88 43.64 16
13 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
14 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16
15 H -0.23 -8.51 6.54 99.48 0.65 -7.86 16
16 C 0.11 2.61 5.11 86.38 0.44 3.05 16
17 C -0.04 -0.55 6.03 28.79 0.17 -0.38 16
18 C 0.24 4.87 15.43 89.44 1.38 6.25 16
19 N -0.49 -12.98 18.54 20.01 0.37 -12.61 16
20 C -0.07 -1.30 5.24 -20.14 -0.11 -1.41 16
21 C -0.07 -0.99 9.72 22.57 0.22 -0.77 16
22 C -0.15 -2.13 10.01 22.27 0.22 -1.91 16
23 C 0.08 1.39 7.31 22.49 0.16 1.56 16
24 F -0.15 -2.79 17.26 44.97 0.78 -2.01 16
25 C -0.15 -2.42 10.01 22.27 0.22 -2.20 16
26 C -0.08 -1.31 9.78 22.56 0.22 -1.09 16
27 H 0.07 1.39 7.99 -2.39 -0.02 1.37 16
28 H 0.06 1.98 7.12 -2.39 -0.02 1.96 16
29 H 0.07 1.92 7.43 -2.39 -0.02 1.91 16
30 H 0.16 2.71 6.15 -2.91 -0.02 2.69 16
31 H 0.06 2.17 7.13 -2.38 -0.02 2.16 16
32 H 0.03 1.27 6.85 -2.39 -0.02 1.26 16
33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16
34 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16
35 H 0.10 1.94 6.03 -2.39 -0.01 1.92 16
36 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16
37 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16
38 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16
39 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16
40 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16
41 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16
Total: -1.00 -75.91 363.37 7.60 -68.31
By element:
Atomic # 1 Polarization: 9.52 SS G_CDS: 1.00 Total: 10.52 kcal
Atomic # 6 Polarization: -8.36 SS G_CDS: 5.37 Total: -2.99 kcal
Atomic # 7 Polarization: -91.51 SS G_CDS: -1.37 Total: -92.88 kcal
Atomic # 8 Polarization: -24.53 SS G_CDS: -0.06 Total: -24.59 kcal
Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal
Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.64 kcal
Total: -75.91 7.60 -68.31 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299355722.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.126 kcal
(2) G-P(sol) polarization free energy of solvation -75.914 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.788 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.604 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.309 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.183 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds