Wall clock time and date at job start Tue Mar 31 2020 11:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46890 * 2 1 4 4 C 1.52995 * 109.47073 * 239.99531 * 2 1 3 5 5 C 1.50709 * 109.46708 * 119.99701 * 2 1 3 6 6 N 1.29028 * 124.91356 * 60.02613 * 5 2 1 7 7 C 1.31777 * 117.12162 * 179.97438 * 6 5 2 8 8 C 1.33640 * 114.50445 * 0.02562 * 7 6 5 9 9 C 1.50695 * 126.04364 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.47099 * 90.02338 * 9 8 7 11 11 C 1.39689 * 119.99791 * 180.02562 * 10 9 8 12 12 C 1.39339 * 119.95247 * 359.72146 * 11 10 9 13 13 C 1.38474 * 120.42244 * 179.72338 * 12 11 10 14 14 C 1.37692 * 120.32356 * 0.55231 * 13 12 11 15 15 C 1.40740 * 119.89288 * 359.72587 * 14 13 12 16 16 C 1.41409 * 120.20829 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00143 * 24.41726 * 16 15 14 18 18 C 1.39930 * 120.00600 * 204.41255 * 16 15 14 19 19 N 1.30831 * 119.99571 * 17.88122 * 18 16 15 20 20 Si 1.86792 * 120.00531 * 197.87604 * 18 16 15 21 21 H 1.48505 * 109.46969 * 60.00136 * 20 18 16 22 22 H 1.48507 * 109.47385 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47232 * 300.00235 * 20 18 16 24 24 C 1.38269 * 119.94964 * 179.97438 * 11 10 9 25 25 S 1.70974 * 124.91484 * 240.02317 * 5 2 1 26 26 H 1.09002 * 109.47582 * 300.00418 * 1 2 3 27 27 H 1.09006 * 109.47405 * 60.00255 * 1 2 3 28 28 H 1.09001 * 109.47538 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46666 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47320 * 299.99402 * 3 2 1 31 31 H 1.08996 * 109.47194 * 60.00136 * 3 2 1 32 32 H 1.09006 * 109.47495 * 299.99863 * 4 2 1 33 33 H 1.08996 * 109.47152 * 60.00588 * 4 2 1 34 34 H 1.09007 * 109.46995 * 180.02562 * 4 2 1 35 35 H 1.08004 * 122.75282 * 179.72885 * 7 6 5 36 36 H 1.09007 * 109.47576 * 210.02355 * 9 8 7 37 37 H 1.08994 * 109.47038 * 330.02182 * 9 8 7 38 38 H 0.96989 * 119.99874 * 359.97438 * 10 9 8 39 39 H 1.08007 * 119.78852 * 0.02562 * 12 11 10 40 40 H 1.08000 * 119.83718 * 180.27767 * 13 12 11 41 41 H 1.08001 * 120.05225 * 179.74174 * 14 13 12 42 42 H 0.97006 * 120.00167 * 179.97438 * 19 18 16 43 43 H 1.08003 * 120.16338 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2491 5 6 2.0322 -0.7104 1.2306 6 7 1.7800 -1.9404 1.5279 7 6 2.2997 -2.4070 2.6454 8 6 3.0306 -1.5214 3.3290 9 6 3.7394 -1.7759 4.6342 10 7 5.0975 -2.2561 4.3669 11 6 5.9518 -2.5620 5.4289 12 6 5.5133 -2.4046 6.7421 13 6 6.3501 -2.7104 7.8022 14 6 7.6296 -3.1629 7.5697 15 6 8.0884 -3.3214 6.2487 16 6 9.4010 -3.7862 6.0024 17 1 9.9120 -4.3801 6.7457 18 6 10.0379 -3.4768 4.7954 19 7 9.5926 -2.4954 4.0537 20 14 11.5240 -4.4648 4.2434 21 1 11.1411 -5.8916 4.0914 22 1 12.0109 -3.9411 2.9418 23 1 12.6016 -4.3468 5.2582 24 6 7.2332 -3.0156 5.1754 25 16 3.0188 -0.0032 2.4346 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7491 -1.2491 33 1 1.6767 -0.2075 -2.1391 34 1 3.1300 -0.7217 -1.2489 35 1 2.1436 -3.4208 2.9837 36 1 3.7877 -0.8504 5.2081 37 1 3.1935 -2.5282 5.2034 38 1 5.4031 -2.3622 3.4525 39 1 4.5127 -2.0464 6.9343 40 1 5.9989 -2.5891 8.8162 41 1 8.2799 -3.3962 8.3999 42 1 10.0343 -2.2806 3.2172 43 1 7.5754 -3.1345 4.1579 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313440122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:58 Heat of formation + Delta-G solvation = 47.538863 kcal Electronic energy + Delta-G solvation = -22814.823554 eV Core-core repulsion = 19564.603713 eV Total energy + Delta-G solvation = -3250.219842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.99812 -37.89233 -36.98472 -35.04087 -33.32889 -30.88016 -29.43513 -27.87843 -27.68229 -27.54152 -25.81980 -25.21169 -23.67071 -21.27057 -20.93787 -19.92612 -18.73816 -17.82633 -17.22843 -16.11714 -15.47162 -15.14165 -14.84146 -14.74509 -14.53489 -14.28216 -14.00519 -13.67832 -13.57480 -13.06730 -12.70570 -12.64487 -12.44918 -12.35978 -12.10074 -11.97715 -11.68111 -11.62423 -11.37420 -11.31809 -11.22992 -11.05127 -10.96862 -10.59536 -10.43364 -9.72243 -9.60293 -9.48606 -9.26506 -9.22956 -8.84560 -8.78571 -7.31559 -6.72804 -6.20353 -4.30934 0.63052 1.28911 1.75474 2.77911 2.88730 3.09481 3.12820 3.22455 3.34130 3.84944 3.98122 4.40551 4.48139 4.59690 4.72508 4.73574 4.92855 5.12195 5.24956 5.28081 5.32282 5.45155 5.55573 5.59126 5.65101 5.76334 5.79867 5.81951 5.93327 5.99034 6.00731 6.18848 6.26056 6.56176 6.86686 7.08090 7.13915 7.36747 7.42371 7.68798 7.78086 7.95113 8.09398 8.16942 8.48074 8.65208 8.82702 9.01238 9.10930 10.25960 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016716 B = 0.002919 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.644366 B = 9590.924940 C =10701.042435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.011 3.989 3 C -0.155 4.155 4 C -0.134 4.134 5 C 0.049 3.951 6 N -0.472 5.472 7 C 0.049 3.951 8 C -0.234 4.234 9 C 0.216 3.784 10 N -0.757 5.757 11 C 0.215 3.785 12 C -0.300 4.300 13 C -0.065 4.065 14 C -0.256 4.256 15 C 0.139 3.861 16 C -0.465 4.465 17 H 0.076 0.924 18 C 0.078 3.922 19 N -0.792 5.792 20 Si 0.905 3.095 21 H -0.264 1.264 22 H -0.280 1.280 23 H -0.266 1.266 24 C -0.229 4.229 25 S 0.140 5.860 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.175 0.825 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.391 0.609 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.278 0.722 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.127 6.663 -9.776 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.007 3.993 3 C -0.213 4.213 4 C -0.193 4.193 5 C -0.229 4.229 6 N -0.185 5.185 7 C -0.103 4.103 8 C -0.355 4.355 9 C 0.088 3.912 10 N -0.392 5.392 11 C 0.117 3.883 12 C -0.323 4.323 13 C -0.084 4.084 14 C -0.277 4.277 15 C 0.136 3.864 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.140 4.140 19 N -0.417 5.417 20 Si 0.729 3.271 21 H -0.189 1.189 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.253 4.253 25 S 0.397 5.603 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.192 0.808 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.224 0.776 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.111 7.544 -10.067 19.662 hybrid contribution 0.726 -1.324 -0.251 1.531 sum -14.386 6.220 -10.318 18.764 Atomic orbital electron populations 1.21830 0.92377 1.03003 1.01958 1.19210 0.96480 0.93966 0.89610 1.22036 1.01928 0.94257 1.03080 1.21840 1.01340 1.00988 0.95141 1.27097 1.00763 0.93845 1.01147 1.66183 1.23394 1.11785 1.17184 1.21743 0.96983 1.01211 0.90318 1.26198 1.08022 0.96779 1.04499 1.19289 0.83713 0.99199 0.88969 1.44441 1.11240 1.76614 1.06884 1.17621 0.89660 0.94544 0.86487 1.19866 1.00058 1.21081 0.91313 1.20282 0.94104 0.98074 0.95972 1.20869 0.96539 1.14097 0.96185 1.17315 0.92065 0.86827 0.90212 1.19523 0.99036 1.29845 1.01033 0.90584 1.25878 0.98536 0.93634 0.95913 1.69858 1.38191 1.21946 1.11723 0.86436 0.81288 0.81045 0.78305 1.18909 1.20471 1.19076 1.20713 0.91311 1.13383 0.99859 1.84076 1.46622 1.14277 1.15328 0.92553 0.91715 0.91489 0.91676 0.90745 0.91808 0.91472 0.91704 0.92400 0.80807 0.92121 0.91141 0.77571 0.89682 0.89575 0.89349 0.91131 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 8.45 37.16 0.31 -0.76 16 2 C 0.01 0.10 0.99 -155.66 -0.15 -0.05 16 3 C -0.16 -1.17 7.54 37.16 0.28 -0.89 16 4 C -0.13 -1.17 8.45 37.15 0.31 -0.85 16 5 C 0.05 0.59 5.78 -13.45 -0.08 0.51 16 6 N -0.47 -6.40 10.53 -11.86 -0.12 -6.52 16 7 C 0.05 0.67 11.25 -19.19 -0.22 0.46 16 8 C -0.23 -3.24 5.97 -35.92 -0.21 -3.46 16 9 C 0.22 3.36 5.44 -5.19 -0.03 3.33 16 10 N -0.76 -14.49 5.72 -59.86 -0.34 -14.83 16 11 C 0.22 4.99 6.64 -83.86 -0.56 4.44 16 12 C -0.30 -6.77 9.32 -39.08 -0.36 -7.13 16 13 C -0.07 -1.51 10.02 -39.69 -0.40 -1.91 16 14 C -0.26 -6.48 9.79 -38.84 -0.38 -6.86 16 15 C 0.14 3.79 5.57 -106.85 -0.60 3.19 16 16 C -0.46 -12.57 9.05 -37.74 -0.34 -12.91 16 17 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 18 C 0.08 1.99 5.14 -17.34 -0.09 1.90 16 19 N -0.79 -20.73 10.96 55.55 0.61 -20.12 16 20 Si 0.90 18.98 29.59 -169.99 -5.03 13.95 16 21 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 C -0.23 -5.99 8.53 -38.68 -0.33 -6.32 16 25 S 0.14 1.72 21.57 -107.50 -2.32 -0.60 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.17 2.13 8.06 -52.48 -0.42 1.70 16 36 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 37 H 0.07 1.06 7.95 -51.93 -0.41 0.65 16 38 H 0.39 7.41 8.47 -40.82 -0.35 7.06 16 39 H 0.08 1.71 6.70 -52.48 -0.35 1.35 16 40 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 41 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 42 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 43 H 0.12 3.16 6.16 -52.48 -0.32 2.84 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -28.71 368.04 -10.95 -39.66 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.45 Total: 10.22 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -2.84 Total: -27.32 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.14 Total: -41.47 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.32 Total: -0.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.71 -10.95 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313440122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.198 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds