Wall clock time and date at job start Tue Mar 31 2020 11:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46890 * 2 1 4 4 C 1.52995 * 109.47073 * 239.99531 * 2 1 3 5 5 C 1.50709 * 109.46708 * 119.99701 * 2 1 3 6 6 N 1.29028 * 124.91356 * 60.02613 * 5 2 1 7 7 C 1.31777 * 117.12162 * 179.97438 * 6 5 2 8 8 C 1.33640 * 114.50445 * 0.02562 * 7 6 5 9 9 C 1.50695 * 126.04364 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.47099 * 90.02338 * 9 8 7 11 11 C 1.39689 * 119.99791 * 180.02562 * 10 9 8 12 12 C 1.39339 * 119.95247 * 359.72146 * 11 10 9 13 13 C 1.38474 * 120.42244 * 179.72338 * 12 11 10 14 14 C 1.37692 * 120.32356 * 0.55231 * 13 12 11 15 15 C 1.40740 * 119.89288 * 359.72587 * 14 13 12 16 16 C 1.41409 * 120.20829 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00143 * 24.41726 * 16 15 14 18 18 C 1.39930 * 120.00600 * 204.41255 * 16 15 14 19 19 N 1.30831 * 119.99571 * 17.88122 * 18 16 15 20 20 Si 1.86792 * 120.00531 * 197.87604 * 18 16 15 21 21 H 1.48505 * 109.46969 * 60.00136 * 20 18 16 22 22 H 1.48507 * 109.47385 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47232 * 300.00235 * 20 18 16 24 24 C 1.38269 * 119.94964 * 179.97438 * 11 10 9 25 25 S 1.70974 * 124.91484 * 240.02317 * 5 2 1 26 26 H 1.09002 * 109.47582 * 300.00418 * 1 2 3 27 27 H 1.09006 * 109.47405 * 60.00255 * 1 2 3 28 28 H 1.09001 * 109.47538 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46666 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47320 * 299.99402 * 3 2 1 31 31 H 1.08996 * 109.47194 * 60.00136 * 3 2 1 32 32 H 1.09006 * 109.47495 * 299.99863 * 4 2 1 33 33 H 1.08996 * 109.47152 * 60.00588 * 4 2 1 34 34 H 1.09007 * 109.46995 * 180.02562 * 4 2 1 35 35 H 1.08004 * 122.75282 * 179.72885 * 7 6 5 36 36 H 1.09007 * 109.47576 * 210.02355 * 9 8 7 37 37 H 1.08994 * 109.47038 * 330.02182 * 9 8 7 38 38 H 0.96989 * 119.99874 * 359.97438 * 10 9 8 39 39 H 1.08007 * 119.78852 * 0.02562 * 12 11 10 40 40 H 1.08000 * 119.83718 * 180.27767 * 13 12 11 41 41 H 1.08001 * 120.05225 * 179.74174 * 14 13 12 42 42 H 0.97006 * 120.00167 * 179.97438 * 19 18 16 43 43 H 1.08003 * 120.16338 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2491 5 6 2.0322 -0.7104 1.2306 6 7 1.7800 -1.9404 1.5279 7 6 2.2997 -2.4070 2.6454 8 6 3.0306 -1.5214 3.3290 9 6 3.7394 -1.7759 4.6342 10 7 5.0975 -2.2561 4.3669 11 6 5.9518 -2.5620 5.4289 12 6 5.5133 -2.4046 6.7421 13 6 6.3501 -2.7104 7.8022 14 6 7.6296 -3.1629 7.5697 15 6 8.0884 -3.3214 6.2487 16 6 9.4010 -3.7862 6.0024 17 1 9.9120 -4.3801 6.7457 18 6 10.0379 -3.4768 4.7954 19 7 9.5926 -2.4954 4.0537 20 14 11.5240 -4.4648 4.2434 21 1 11.1411 -5.8916 4.0914 22 1 12.0109 -3.9411 2.9418 23 1 12.6016 -4.3468 5.2582 24 6 7.2332 -3.0156 5.1754 25 16 3.0188 -0.0032 2.4346 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7491 -1.2491 33 1 1.6767 -0.2075 -2.1391 34 1 3.1300 -0.7217 -1.2489 35 1 2.1436 -3.4208 2.9837 36 1 3.7877 -0.8504 5.2081 37 1 3.1935 -2.5282 5.2034 38 1 5.4031 -2.3622 3.4525 39 1 4.5127 -2.0464 6.9343 40 1 5.9989 -2.5891 8.8162 41 1 8.2799 -3.3962 8.3999 42 1 10.0343 -2.2806 3.2172 43 1 7.5754 -3.1345 4.1579 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313440122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:57 Heat of formation + Delta-G solvation = 33.070001 kcal Electronic energy + Delta-G solvation = -22815.450971 eV Core-core repulsion = 19564.603713 eV Total energy + Delta-G solvation = -3250.847259 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.99317 -39.63942 -37.86623 -36.60997 -35.16016 -32.25338 -31.34868 -29.30656 -28.34956 -28.19629 -27.17739 -26.99061 -24.90548 -22.89935 -22.05366 -21.71856 -19.75824 -19.10144 -18.78781 -17.68902 -16.81391 -16.54803 -16.28707 -16.11717 -15.69691 -15.41297 -14.95786 -14.87553 -14.69744 -14.54664 -14.35525 -14.07417 -13.63355 -13.43941 -13.11534 -13.09671 -12.95804 -12.76196 -12.63608 -12.51577 -12.44100 -12.21453 -12.10872 -12.00151 -11.91770 -11.58045 -11.34269 -11.08951 -10.63592 -10.50266 -10.30944 -9.86870 -9.25875 -8.62842 -7.96270 -6.32353 -0.39235 0.29545 0.74503 1.08671 1.32390 1.37776 1.48790 1.58822 1.73957 2.22266 2.79933 2.88784 3.00960 3.71181 3.76165 3.85201 3.93075 4.01296 4.14718 4.33728 4.49955 4.55346 4.67151 4.71962 4.77475 4.79007 4.82558 4.93536 4.94577 4.97470 4.98736 5.08779 5.19201 5.23901 5.28126 5.33836 5.37831 5.42451 5.56848 5.92792 6.09448 6.20454 6.23622 6.56314 6.68219 6.91404 6.96490 7.05140 7.20512 8.37340 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016716 B = 0.002919 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.644366 B = 9590.924940 C =10701.042435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.006 3.994 3 C -0.154 4.154 4 C -0.132 4.132 5 C 0.057 3.943 6 N -0.494 5.494 7 C 0.051 3.949 8 C -0.254 4.254 9 C 0.219 3.781 10 N -0.751 5.751 11 C 0.220 3.780 12 C -0.300 4.300 13 C -0.062 4.062 14 C -0.283 4.283 15 C 0.108 3.892 16 C -0.504 4.504 17 H 0.072 0.928 18 C 0.037 3.963 19 N -0.821 5.821 20 Si 0.979 3.021 21 H -0.263 1.263 22 H -0.268 1.268 23 H -0.259 1.259 24 C -0.257 4.257 25 S 0.152 5.848 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.183 0.817 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.390 0.610 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.285 0.715 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.434 7.569 -10.768 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.002 3.998 3 C -0.212 4.212 4 C -0.191 4.191 5 C -0.221 4.221 6 N -0.207 5.207 7 C -0.101 4.101 8 C -0.376 4.376 9 C 0.093 3.907 10 N -0.384 5.384 11 C 0.120 3.880 12 C -0.323 4.323 13 C -0.080 4.080 14 C -0.304 4.304 15 C 0.105 3.895 16 C -0.533 4.533 17 H 0.091 0.909 18 C -0.178 4.178 19 N -0.447 5.447 20 Si 0.799 3.201 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.184 1.184 24 C -0.282 4.282 25 S 0.410 5.590 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.200 0.800 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.223 0.777 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.453 8.471 -11.060 21.558 hybrid contribution 0.958 -1.523 0.014 1.799 sum -15.495 6.948 -11.045 20.258 Atomic orbital electron populations 1.21814 0.91276 1.02504 1.03177 1.19460 0.97314 0.94648 0.88343 1.22058 1.01534 0.93212 1.04393 1.21835 1.00727 1.00515 0.95994 1.27761 0.99340 0.93466 1.01500 1.66254 1.24402 1.12627 1.17438 1.21948 0.96385 1.01594 0.90200 1.25995 1.09080 0.97973 1.04503 1.19333 0.81804 0.99345 0.90196 1.44542 1.12234 1.75713 1.05934 1.17717 0.89231 0.93074 0.88012 1.20230 1.01291 1.20090 0.90706 1.20664 0.93129 0.96315 0.97938 1.21037 0.98002 1.15743 0.95629 1.17711 0.92740 0.87603 0.91461 1.19782 0.99785 1.31344 1.02431 0.90948 1.26710 1.01499 0.94213 0.95356 1.69920 1.39671 1.22974 1.12169 0.85317 0.77391 0.79143 0.78208 1.18704 1.19218 1.18372 1.20633 0.92887 1.15844 0.98788 1.84008 1.46525 1.13378 1.15126 0.92619 0.89239 0.92835 0.92322 0.88354 0.91635 0.92856 0.89128 0.93333 0.80029 0.91863 0.90159 0.77713 0.86632 0.86170 0.89121 0.90504 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.45 71.98 0.61 -1.18 16 2 C 0.01 0.10 0.99 -52.93 -0.05 0.05 16 3 C -0.15 -1.94 7.54 71.98 0.54 -1.40 16 4 C -0.13 -2.06 8.45 71.98 0.61 -1.45 16 5 C 0.06 1.29 5.78 88.52 0.51 1.80 16 6 N -0.49 -12.96 10.53 -191.44 -2.02 -14.98 16 7 C 0.05 1.35 11.25 83.66 0.94 2.29 16 8 C -0.25 -6.81 5.97 24.64 0.15 -6.67 16 9 C 0.22 6.55 5.44 85.63 0.47 7.02 16 10 N -0.75 -28.52 5.72 -343.29 -1.96 -30.48 16 11 C 0.22 10.23 6.64 38.16 0.25 10.49 16 12 C -0.30 -13.11 9.32 22.59 0.21 -12.90 16 13 C -0.06 -2.78 10.02 22.20 0.22 -2.56 16 14 C -0.28 -14.58 9.79 22.75 0.22 -14.36 16 15 C 0.11 6.09 5.57 -21.31 -0.12 5.97 16 16 C -0.50 -28.33 9.05 23.46 0.21 -28.11 16 17 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 18 C 0.04 1.93 5.14 85.25 0.44 2.37 16 19 N -0.82 -44.24 10.96 21.82 0.24 -44.00 16 20 Si 0.98 39.54 29.59 68.60 2.03 41.57 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 22 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 24 C -0.26 -13.91 8.53 22.85 0.20 -13.72 16 25 S 0.15 3.57 21.57 -56.49 -1.22 2.35 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.83 7.92 -2.38 -0.02 0.81 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.81 7.92 -2.39 -0.02 0.79 16 32 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.18 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.06 1.88 7.93 -2.38 -0.02 1.86 16 37 H 0.08 2.26 7.95 -2.39 -0.02 2.24 16 38 H 0.39 14.92 8.47 -92.72 -0.79 14.14 16 39 H 0.12 4.29 6.70 -2.91 -0.02 4.27 16 40 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 41 H 0.09 4.45 8.06 -2.91 -0.02 4.43 16 42 H 0.28 13.92 8.30 -92.70 -0.77 13.15 16 43 H 0.10 5.54 6.16 -2.91 -0.02 5.52 16 Total: -1.00 -63.44 368.04 2.70 -60.74 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: 0.22 Total: 37.16 kcal Atomic # 6 Polarization: -57.77 SS G_CDS: 5.41 Total: -52.36 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -3.74 Total: -89.46 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.22 Total: 2.35 kcal Total: -63.44 2.70 -60.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313440122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.810 kcal (2) G-P(sol) polarization free energy of solvation -63.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds