Wall clock time and date at job start Tue Mar 31 2020 11:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.52606 * 2 1 4 4 N 1.27933 * 124.23998 * 59.86541 * 3 2 1 5 5 C 1.34656 * 117.84812 * 179.73590 * 4 3 2 6 6 C 1.40975 * 129.68742 * 180.02562 * 5 4 3 7 7 C 1.36176 * 120.42417 * 179.97438 * 6 5 4 8 8 C 1.38791 * 120.77791 * 0.04531 * 7 6 5 9 9 C 1.37645 * 120.07089 * 359.95134 * 8 7 6 10 10 C 1.39340 * 119.95458 * 0.02767 * 9 8 7 11 11 S 1.70653 * 124.23953 * 239.57603 * 3 2 1 12 12 C 1.53119 * 109.57231 * 120.15919 * 2 1 3 13 13 C 1.53038 * 109.28005 * 62.27977 * 12 2 1 14 14 N 1.46845 * 109.52035 * 59.18167 * 13 12 2 15 15 C 1.46900 * 110.99566 * 174.16002 * 14 13 12 16 16 C 1.50698 * 109.47415 * 59.33537 * 15 14 13 17 17 H 1.08002 * 119.99634 * 5.00088 * 16 15 14 18 18 C 1.37874 * 120.00288 * 185.00304 * 16 15 14 19 19 N 1.31515 * 120.00174 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99789 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47485 * 89.99705 * 20 18 16 22 22 H 1.48509 * 109.46969 * 209.99802 * 20 18 16 23 23 H 1.48499 * 109.47265 * 329.99271 * 20 18 16 24 24 C 1.46841 * 111.19849 * 298.25453 * 14 13 12 25 25 C 1.53037 * 109.52152 * 61.74492 * 24 14 13 26 26 H 1.09006 * 109.46791 * 60.00157 * 1 2 3 27 27 H 1.08997 * 109.47366 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46976 * 300.00577 * 1 2 3 29 29 H 1.07996 * 119.78714 * 0.02562 * 6 5 4 30 30 H 1.08005 * 119.60712 * 179.97438 * 7 6 5 31 31 H 1.08006 * 119.96256 * 179.97438 * 8 7 6 32 32 H 1.08003 * 120.02664 * 180.02562 * 9 8 7 33 33 H 1.08996 * 109.50476 * 182.22372 * 12 2 1 34 34 H 1.09004 * 109.50046 * 302.33758 * 12 2 1 35 35 H 1.09001 * 109.46206 * 299.16110 * 13 12 2 36 36 H 1.08998 * 109.46267 * 179.19831 * 13 12 2 37 37 H 1.09005 * 109.46874 * 179.33383 * 15 14 13 38 38 H 1.09002 * 109.47189 * 299.32946 * 15 14 13 39 39 H 0.96995 * 120.00169 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.46689 * 301.73283 * 24 14 13 41 41 H 1.09005 * 109.46305 * 181.75814 * 24 14 13 42 42 H 1.09004 * 109.50719 * 180.87783 * 25 24 14 43 43 H 1.09003 * 109.50460 * 60.76247 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 7 1.7739 2.2762 0.9147 5 6 2.2965 3.5107 0.7878 6 6 2.1747 4.6313 1.6344 7 6 2.7920 5.8036 1.3198 8 6 3.5502 5.9189 0.1630 9 6 3.6868 4.8413 -0.6824 10 6 3.0627 3.6336 -0.3765 11 16 3.0279 2.0865 -1.2165 12 6 2.0429 -0.7248 1.2474 13 6 1.5791 -2.1828 1.2113 14 7 2.0950 -2.8319 -0.0007 15 6 1.7861 -4.2680 -0.0008 16 6 0.2931 -4.4608 0.0686 17 1 -0.3643 -3.6050 0.0272 18 6 -0.2335 -5.7297 0.1849 19 7 -1.5365 -5.8979 0.2460 20 14 0.9037 -7.2098 0.2573 21 1 1.2555 -7.4951 1.6715 22 1 0.2188 -8.3895 -0.3300 23 1 2.1407 -6.9218 -0.5122 24 6 1.5780 -2.1824 -1.2120 25 6 2.0417 -0.7244 -1.2481 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.5887 4.5593 2.5387 30 1 2.6895 6.6540 1.9777 31 1 4.0338 6.8551 -0.0739 32 1 4.2772 4.9317 -1.5822 33 1 3.1322 -0.6898 1.2666 34 1 1.6470 -0.2389 2.1392 35 1 0.4897 -2.2173 1.2062 36 1 1.9547 -2.7053 2.0910 37 1 2.1690 -4.7220 -0.9148 38 1 2.2540 -4.7403 0.8630 39 1 -1.9070 -6.7905 0.3282 40 1 0.4886 -2.2168 -1.2058 41 1 1.9527 -2.7046 -2.0923 42 1 1.6449 -0.2382 -2.1394 43 1 3.1310 -0.6894 -1.2683 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334435494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:35 Heat of formation + Delta-G solvation = 53.094903 kcal Electronic energy + Delta-G solvation = -23900.116376 eV Core-core repulsion = 20650.137463 eV Total energy + Delta-G solvation = -3249.978914 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.58990 -39.24956 -36.97491 -34.52454 -32.25892 -31.31894 -30.45548 -29.74556 -28.27234 -26.47674 -25.17211 -23.60453 -22.92847 -22.48172 -21.25317 -20.16388 -18.72608 -18.09936 -16.76922 -16.58210 -16.05464 -15.47166 -15.04353 -14.82229 -14.48049 -14.24153 -14.14516 -14.09397 -13.69889 -13.36325 -12.76041 -12.57567 -12.31696 -12.18059 -12.00239 -11.98098 -11.59965 -11.53424 -11.17847 -11.07009 -10.90141 -10.71997 -10.70421 -10.37382 -10.27868 -10.05408 -10.01586 -9.86683 -9.54688 -9.45163 -8.72172 -8.61116 -8.25736 -7.19471 -6.12597 -4.12594 0.31732 0.94216 1.17807 1.70093 2.25463 3.26680 3.34703 3.38403 3.52490 3.75718 4.38115 4.41952 4.63149 4.76052 4.88455 4.91243 4.99791 5.11352 5.12630 5.21491 5.31061 5.43736 5.64517 5.68564 5.79584 5.89944 5.92266 5.94403 5.99059 6.06965 6.14090 6.15803 6.30146 6.31822 6.35659 6.41087 6.49444 6.63452 6.71109 6.88877 6.95473 7.06106 7.54210 7.60662 8.03284 8.09542 8.42149 8.89291 9.50594 11.00203 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.036309 B = 0.002921 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.965212 B = 9582.893073 C = 9834.811944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.013 3.987 3 C 0.125 3.875 4 N -0.472 5.472 5 C 0.089 3.911 6 C -0.068 4.068 7 C -0.109 4.109 8 C -0.112 4.112 9 C -0.069 4.069 10 C -0.198 4.198 11 S 0.104 5.896 12 C -0.095 4.095 13 C 0.062 3.938 14 N -0.535 5.535 15 C 0.155 3.845 16 C -0.552 4.552 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.879 3.121 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.264 1.264 24 C 0.065 3.935 25 C -0.115 4.115 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.028 0.972 38 H 0.026 0.974 39 H 0.263 0.737 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.895 21.724 -1.475 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.009 3.991 3 C -0.159 4.159 4 N -0.184 5.184 5 C -0.032 4.032 6 C -0.089 4.089 7 C -0.130 4.130 8 C -0.134 4.134 9 C -0.092 4.092 10 C -0.316 4.316 11 S 0.363 5.637 12 C -0.134 4.134 13 C -0.066 4.066 14 N -0.259 5.259 15 C 0.028 3.972 16 C -0.590 4.590 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.706 3.294 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.063 4.063 25 C -0.154 4.154 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.356 21.036 -1.951 23.528 hybrid contribution -0.581 -0.229 0.673 0.918 sum 9.775 20.807 -1.278 23.024 Atomic orbital electron populations 1.21953 0.91920 1.03819 1.01989 1.19490 0.96846 0.84301 0.98466 1.27094 0.96579 1.00186 0.92054 1.66132 1.23941 1.00637 1.27673 1.19273 0.97317 0.92011 0.94570 1.20399 0.99553 0.90213 0.98720 1.20696 0.97474 0.97377 0.97462 1.21085 0.99365 0.98294 0.94612 1.20328 0.98713 0.90220 0.99892 1.24049 1.06751 1.00012 1.00818 1.84036 1.51081 1.01525 1.27093 1.21661 1.00803 0.95771 0.95174 1.21929 0.99203 0.91697 0.93810 1.62385 1.57918 1.04626 1.00971 1.20165 0.95692 0.84422 0.96937 1.21689 0.91334 0.94421 1.51596 0.90656 1.24968 0.94855 0.99025 0.94185 1.69923 1.10991 1.22728 1.50019 0.86801 0.81414 0.82455 0.78758 1.20216 1.21371 1.18856 1.21851 0.98984 0.91385 0.94124 1.21831 1.01326 0.97021 0.95240 0.92934 0.89880 0.91820 0.84953 0.85007 0.85021 0.85409 0.91756 0.91185 0.92933 0.91303 0.95421 0.95600 0.92678 0.93127 0.91224 0.91559 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 7.86 37.16 0.29 -1.83 16 2 C 0.01 0.19 0.74 -155.54 -0.12 0.08 16 3 C 0.13 1.83 5.72 -13.90 -0.08 1.75 16 4 N -0.47 -7.22 10.52 -9.08 -0.10 -7.31 16 5 C 0.09 1.22 7.00 -84.96 -0.59 0.63 16 6 C -0.07 -0.75 10.05 -39.29 -0.39 -1.14 16 7 C -0.11 -0.92 9.94 -40.12 -0.40 -1.32 16 8 C -0.11 -0.90 10.04 -39.59 -0.40 -1.30 16 9 C -0.07 -0.67 10.07 -39.39 -0.40 -1.07 16 10 C -0.20 -2.48 6.56 -38.54 -0.25 -2.73 16 11 S 0.10 1.30 21.41 -107.50 -2.30 -1.00 16 12 C -0.09 -1.51 4.85 -26.65 -0.13 -1.64 16 13 C 0.06 1.17 4.78 -3.83 -0.02 1.15 16 14 N -0.54 -10.67 4.86 -236.12 -1.15 -11.82 16 15 C 0.15 3.59 4.19 -4.98 -0.02 3.57 16 16 C -0.55 -14.81 8.27 -34.44 -0.28 -15.09 16 17 H 0.08 2.17 6.10 -52.49 -0.32 1.85 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 20 Si 0.88 21.08 27.37 -169.99 -4.65 16.43 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.26 -6.10 6.69 56.52 0.38 -5.72 16 24 C 0.07 1.17 4.87 -3.84 -0.02 1.15 16 25 C -0.12 -1.70 3.92 -26.65 -0.10 -1.81 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.43 4.93 -51.93 -0.26 1.18 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 31 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 32 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.05 1.09 5.10 -51.93 -0.26 0.83 16 36 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 37 H 0.03 0.65 7.49 -51.93 -0.39 0.26 16 38 H 0.03 0.61 7.29 -51.93 -0.38 0.23 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.05 1.01 5.24 -51.93 -0.27 0.74 16 41 H 0.07 1.23 8.08 -51.93 -0.42 0.82 16 42 H 0.07 0.87 8.00 -51.93 -0.42 0.46 16 43 H 0.07 1.03 7.78 -51.93 -0.40 0.63 16 LS Contribution 344.59 15.07 5.19 5.19 Total: -1.00 -30.29 344.59 -11.32 -41.61 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.08 Total: 0.66 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -3.01 Total: -17.67 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.47 Total: -45.21 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.65 Total: 16.43 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.30 Total: -1.00 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.29 -11.32 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334435494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.705 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds