Wall clock time and date at job start Tue Mar 31 2020 11:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46912 * 2 1 4 4 C 1.53001 * 109.46989 * 173.78787 * 3 2 1 5 5 N 1.46902 * 109.47315 * 53.79013 * 3 2 1 6 6 C 1.46898 * 110.99869 * 59.99675 * 5 3 2 7 7 C 1.50702 * 109.46874 * 180.02562 * 6 5 3 8 8 C 1.38636 * 119.74907 * 269.72964 * 7 6 5 9 9 C 1.37622 * 120.24704 * 179.72143 * 8 7 6 10 10 C 1.40714 * 119.74509 * 0.57269 * 9 8 7 11 11 C 1.41393 * 120.24379 * 179.68277 * 10 9 8 12 12 H 1.07998 * 120.00275 * 29.10644 * 11 10 9 13 13 C 1.39950 * 119.99390 * 209.10529 * 11 10 9 14 14 N 1.30821 * 120.00528 * 10.40530 * 13 11 10 15 15 Si 1.86805 * 119.99521 * 190.40460 * 13 11 10 16 16 H 1.48502 * 109.46914 * 60.00264 * 15 13 11 17 17 H 1.48494 * 109.47160 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47123 * 300.00106 * 15 13 11 19 19 C 1.40714 * 119.51150 * 359.69923 * 10 9 8 20 20 C 1.37624 * 119.74669 * 0.02562 * 19 10 9 21 21 C 1.50699 * 109.47352 * 293.78725 * 3 2 1 22 22 N 1.29018 * 124.91867 * 170.95618 * 21 3 2 23 23 C 1.31783 * 117.12723 * 180.02562 * 22 21 3 24 24 C 1.33640 * 114.49797 * 0.22342 * 23 22 21 25 25 S 1.70975 * 124.91469 * 350.95544 * 21 3 2 26 26 H 1.08998 * 109.47085 * 65.23859 * 1 2 3 27 27 H 1.08996 * 109.46825 * 185.24049 * 1 2 3 28 28 H 1.08999 * 109.47145 * 305.23845 * 1 2 3 29 29 H 1.08996 * 109.46703 * 239.99812 * 2 1 3 30 30 H 1.08997 * 109.46738 * 119.99960 * 2 1 3 31 31 H 1.08995 * 109.47402 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47431 * 300.00312 * 4 3 2 33 33 H 1.09006 * 109.46869 * 59.99732 * 4 3 2 34 34 H 1.00897 * 110.99722 * 296.04213 * 5 3 2 35 35 H 1.09000 * 109.47136 * 300.00259 * 6 5 3 36 36 H 1.09001 * 109.47379 * 60.00508 * 6 5 3 37 37 H 1.07999 * 119.87734 * 359.97438 * 8 7 6 38 38 H 1.07999 * 120.12829 * 180.27133 * 9 8 7 39 39 H 0.97002 * 119.99937 * 179.97438 * 14 13 11 40 40 H 1.07997 * 120.13232 * 179.97438 * 19 10 9 41 41 H 1.07998 * 119.87821 * 179.97438 * 20 19 10 42 42 H 1.07999 * 122.75216 * 179.97438 * 23 22 21 43 43 H 1.08002 * 126.03613 * 179.76639 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5620 1.4454 0.1561 5 7 1.4318 2.1769 1.1175 6 6 1.7746 1.5561 2.4040 7 6 1.1339 2.3348 3.5239 8 6 1.8224 3.3834 4.1144 9 6 1.2448 4.1050 5.1340 10 6 -0.0446 3.7673 5.5849 11 6 -0.6453 4.4974 6.6363 12 1 -0.3914 5.5363 6.7862 13 6 -1.5689 3.8735 7.4827 14 7 -1.7264 2.5757 7.4359 15 14 -2.5768 4.8942 8.6794 16 1 -3.3909 5.8807 7.9249 17 1 -3.4751 4.0025 9.4560 18 1 -1.6661 5.6107 9.6080 19 6 -0.7317 2.6976 4.9820 20 6 -0.1370 1.9934 3.9600 21 6 1.6672 2.1072 -1.3001 22 7 1.8017 3.3655 -1.5514 23 6 1.4246 3.7839 -2.7428 24 6 0.9409 2.8259 -3.5392 25 16 1.0046 1.3029 -2.6556 26 1 -0.3633 0.4304 -0.9332 27 1 -0.3633 -1.0233 0.0939 28 1 -0.3633 0.5929 0.8393 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9253 2.4730 0.1566 32 1 3.8318 0.9646 1.0964 33 1 4.0133 0.9004 -0.6731 34 1 0.4316 2.2448 1.0038 35 1 1.4094 0.5293 2.4206 36 1 2.8570 1.5590 2.5319 37 1 2.8140 3.6374 3.7702 38 1 1.7812 4.9242 5.5897 39 1 -2.3663 2.1433 8.0229 40 1 -1.7217 2.4295 5.3205 41 1 -0.6623 1.1717 3.4961 42 1 1.4966 4.8171 -3.0490 43 1 0.5770 2.9611 -4.5470 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342725555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:04 Heat of formation + Delta-G solvation = 61.481745 kcal Electronic energy + Delta-G solvation = -23611.152508 eV Core-core repulsion = 20361.537275 eV Total energy + Delta-G solvation = -3249.615233 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.01464 -38.38046 -37.20422 -33.91099 -32.13821 -30.91003 -29.72930 -29.20721 -28.96269 -26.42735 -25.40225 -23.67722 -23.22472 -20.96405 -20.87291 -19.75917 -19.27851 -17.73322 -17.23501 -16.24874 -15.53453 -15.14758 -15.06233 -14.77435 -14.50360 -13.97084 -13.69619 -13.58219 -13.34345 -13.20976 -13.03305 -12.43839 -12.19852 -12.12471 -11.88911 -11.73356 -11.54102 -11.42199 -11.20885 -11.19134 -11.07933 -10.94131 -10.81697 -10.45710 -10.33491 -9.59593 -9.50015 -9.37752 -9.32108 -9.15018 -8.89699 -8.04055 -7.40644 -7.19953 -6.66750 -4.33095 0.65258 1.28828 1.69940 2.76946 2.87504 3.08595 3.11982 3.12703 3.21596 3.97328 4.00618 4.43099 4.65289 4.79331 4.89505 4.99484 5.08906 5.12186 5.42463 5.46298 5.49552 5.67261 5.71506 5.75992 5.79340 5.87411 5.94144 5.97453 6.12868 6.15311 6.27406 6.34138 6.44248 6.46834 6.98098 7.13264 7.30710 7.34757 7.42575 7.66021 7.70781 7.81367 7.92371 8.10366 8.16884 8.35638 8.68895 8.94846 9.01838 10.27378 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.002812 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.249186 B = 9954.394183 C =10051.797083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.162 4.162 3 C 0.189 3.811 4 C -0.133 4.133 5 N -0.656 5.656 6 C 0.120 3.880 7 C -0.206 4.206 8 C -0.070 4.070 9 C -0.223 4.223 10 C 0.112 3.888 11 C -0.465 4.465 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.804 5.804 15 Si 0.910 3.090 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.158 4.158 20 C -0.098 4.098 21 C 0.074 3.926 22 N -0.447 5.447 23 C 0.039 3.961 24 C -0.276 4.276 25 S 0.110 5.890 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.343 0.657 35 H 0.026 0.974 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.279 0.721 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.173 0.827 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 -5.819 -17.795 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.202 4.202 3 C 0.094 3.906 4 C -0.192 4.192 5 N -0.289 5.289 6 C -0.007 4.007 7 C -0.208 4.208 8 C -0.089 4.089 9 C -0.243 4.243 10 C 0.110 3.890 11 C -0.495 4.495 12 H 0.093 0.907 13 C -0.142 4.142 14 N -0.431 5.431 15 Si 0.735 3.265 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.178 4.178 20 C -0.117 4.117 21 C -0.206 4.206 22 N -0.160 5.160 23 C -0.112 4.112 24 C -0.415 4.415 25 S 0.365 5.635 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.163 0.837 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.136 0.864 41 H 0.100 0.900 42 H 0.190 0.810 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.571 -6.206 -17.478 19.102 hybrid contribution -1.106 0.595 0.187 1.270 sum 3.465 -5.611 -17.292 18.506 Atomic orbital electron populations 1.22050 0.95179 1.02668 1.02592 1.22397 0.97122 0.97305 1.03363 1.19481 0.96203 0.89368 0.85547 1.21856 0.92026 1.03537 1.01766 1.60777 1.16429 1.51888 0.99797 1.20707 0.99377 0.94194 0.86446 1.18890 0.97226 1.02745 1.01928 1.20347 0.97618 0.95063 0.95852 1.21039 0.96448 1.03934 1.02838 1.17629 0.89861 0.91156 0.90376 1.19555 1.20578 0.98285 1.11107 0.90668 1.25871 0.95820 0.94904 0.97651 1.69784 1.29767 1.09431 1.34094 0.86345 0.79816 0.80303 0.80065 1.18953 1.20426 1.19091 1.21318 1.00495 0.99290 0.96653 1.20534 0.94583 0.98747 0.97881 1.27165 1.01356 0.92207 0.99846 1.66200 1.17943 1.13338 1.18491 1.21918 0.99428 1.01323 0.88529 1.27175 1.12085 0.96071 1.06144 1.83984 1.58953 1.12553 1.08041 0.92183 0.91870 0.91677 0.91403 0.89734 0.90765 0.91211 0.92699 0.83703 0.95636 0.91429 0.89385 0.89102 0.91042 0.86424 0.89971 0.81022 0.80955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 9.15 37.16 0.34 -1.51 16 2 C -0.16 -1.76 3.99 -26.73 -0.11 -1.87 16 3 C 0.19 2.44 0.69 -132.75 -0.09 2.35 16 4 C -0.13 -1.61 8.22 37.16 0.31 -1.30 16 5 N -0.66 -10.38 5.88 -102.39 -0.60 -10.98 16 6 C 0.12 2.01 4.82 -4.98 -0.02 1.99 16 7 C -0.21 -4.38 5.41 -104.33 -0.56 -4.94 16 8 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 9 C -0.22 -5.56 9.80 -38.87 -0.38 -5.94 16 10 C 0.11 3.02 5.55 -106.83 -0.59 2.43 16 11 C -0.46 -12.53 9.06 -37.74 -0.34 -12.87 16 12 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 13 C 0.07 1.88 5.26 -17.34 -0.09 1.78 16 14 N -0.80 -21.03 10.85 55.55 0.60 -20.43 16 15 Si 0.91 19.02 29.57 -169.99 -5.03 13.99 16 16 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 C -0.16 -4.10 8.66 -38.87 -0.34 -4.44 16 20 C -0.10 -2.24 9.67 -39.66 -0.38 -2.63 16 21 C 0.07 0.96 5.64 -13.46 -0.08 0.89 16 22 N -0.45 -6.51 10.54 -11.87 -0.13 -6.63 16 23 C 0.04 0.46 11.35 -19.18 -0.22 0.24 16 24 C -0.28 -2.71 11.37 29.12 0.33 -2.38 16 25 S 0.11 1.13 19.28 -107.50 -2.07 -0.94 16 26 H 0.06 0.64 5.55 -51.00 -0.28 0.36 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.83 6.14 -51.93 -0.32 0.51 16 29 H 0.07 0.64 7.41 -51.93 -0.38 0.26 16 30 H 0.08 0.92 6.75 -51.93 -0.35 0.57 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.80 6.40 -51.93 -0.33 0.47 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.34 5.70 6.79 -39.29 -0.27 5.43 16 35 H 0.03 0.40 6.24 -51.93 -0.32 0.08 16 36 H 0.07 1.09 6.24 -51.93 -0.32 0.77 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.28 6.67 8.30 -40.82 -0.34 6.34 16 40 H 0.12 3.17 6.23 -52.49 -0.33 2.84 16 41 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -28.52 354.38 -10.34 -38.86 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.84 Total: 10.96 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: -2.61 Total: -30.17 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.12 Total: -38.04 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.07 Total: -0.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.52 -10.34 -38.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342725555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.339 kcal (2) G-P(sol) polarization free energy of solvation -28.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds