Wall clock time and date at job start Tue Mar 31 2020 11:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46912 * 2 1 4 4 C 1.53001 * 109.46989 * 173.78787 * 3 2 1 5 5 N 1.46902 * 109.47315 * 53.79013 * 3 2 1 6 6 C 1.46898 * 110.99869 * 59.99675 * 5 3 2 7 7 C 1.50702 * 109.46874 * 180.02562 * 6 5 3 8 8 C 1.38636 * 119.74907 * 269.72964 * 7 6 5 9 9 C 1.37622 * 120.24704 * 179.72143 * 8 7 6 10 10 C 1.40714 * 119.74509 * 0.57269 * 9 8 7 11 11 C 1.41393 * 120.24379 * 179.68277 * 10 9 8 12 12 H 1.07998 * 120.00275 * 29.10644 * 11 10 9 13 13 C 1.39950 * 119.99390 * 209.10529 * 11 10 9 14 14 N 1.30821 * 120.00528 * 10.40530 * 13 11 10 15 15 Si 1.86805 * 119.99521 * 190.40460 * 13 11 10 16 16 H 1.48502 * 109.46914 * 60.00264 * 15 13 11 17 17 H 1.48494 * 109.47160 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47123 * 300.00106 * 15 13 11 19 19 C 1.40714 * 119.51150 * 359.69923 * 10 9 8 20 20 C 1.37624 * 119.74669 * 0.02562 * 19 10 9 21 21 C 1.50699 * 109.47352 * 293.78725 * 3 2 1 22 22 N 1.29018 * 124.91867 * 170.95618 * 21 3 2 23 23 C 1.31783 * 117.12723 * 180.02562 * 22 21 3 24 24 C 1.33640 * 114.49797 * 0.22342 * 23 22 21 25 25 S 1.70975 * 124.91469 * 350.95544 * 21 3 2 26 26 H 1.08998 * 109.47085 * 65.23859 * 1 2 3 27 27 H 1.08996 * 109.46825 * 185.24049 * 1 2 3 28 28 H 1.08999 * 109.47145 * 305.23845 * 1 2 3 29 29 H 1.08996 * 109.46703 * 239.99812 * 2 1 3 30 30 H 1.08997 * 109.46738 * 119.99960 * 2 1 3 31 31 H 1.08995 * 109.47402 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47431 * 300.00312 * 4 3 2 33 33 H 1.09006 * 109.46869 * 59.99732 * 4 3 2 34 34 H 1.00897 * 110.99722 * 296.04213 * 5 3 2 35 35 H 1.09000 * 109.47136 * 300.00259 * 6 5 3 36 36 H 1.09001 * 109.47379 * 60.00508 * 6 5 3 37 37 H 1.07999 * 119.87734 * 359.97438 * 8 7 6 38 38 H 1.07999 * 120.12829 * 180.27133 * 9 8 7 39 39 H 0.97002 * 119.99937 * 179.97438 * 14 13 11 40 40 H 1.07997 * 120.13232 * 179.97438 * 19 10 9 41 41 H 1.07998 * 119.87821 * 179.97438 * 20 19 10 42 42 H 1.07999 * 122.75216 * 179.97438 * 23 22 21 43 43 H 1.08002 * 126.03613 * 179.76639 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5620 1.4454 0.1561 5 7 1.4318 2.1769 1.1175 6 6 1.7746 1.5561 2.4040 7 6 1.1339 2.3348 3.5239 8 6 1.8224 3.3834 4.1144 9 6 1.2448 4.1050 5.1340 10 6 -0.0446 3.7673 5.5849 11 6 -0.6453 4.4974 6.6363 12 1 -0.3914 5.5363 6.7862 13 6 -1.5689 3.8735 7.4827 14 7 -1.7264 2.5757 7.4359 15 14 -2.5768 4.8942 8.6794 16 1 -3.3909 5.8807 7.9249 17 1 -3.4751 4.0025 9.4560 18 1 -1.6661 5.6107 9.6080 19 6 -0.7317 2.6976 4.9820 20 6 -0.1370 1.9934 3.9600 21 6 1.6672 2.1072 -1.3001 22 7 1.8017 3.3655 -1.5514 23 6 1.4246 3.7839 -2.7428 24 6 0.9409 2.8259 -3.5392 25 16 1.0046 1.3029 -2.6556 26 1 -0.3633 0.4304 -0.9332 27 1 -0.3633 -1.0233 0.0939 28 1 -0.3633 0.5929 0.8393 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9253 2.4730 0.1566 32 1 3.8318 0.9646 1.0964 33 1 4.0133 0.9004 -0.6731 34 1 0.4316 2.2448 1.0038 35 1 1.4094 0.5293 2.4206 36 1 2.8570 1.5590 2.5319 37 1 2.8140 3.6374 3.7702 38 1 1.7812 4.9242 5.5897 39 1 -2.3663 2.1433 8.0229 40 1 -1.7217 2.4295 5.3205 41 1 -0.6623 1.1717 3.4961 42 1 1.4966 4.8171 -3.0490 43 1 0.5770 2.9611 -4.5470 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342725555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:03 Heat of formation + Delta-G solvation = 45.670732 kcal Electronic energy + Delta-G solvation = -23611.838125 eV Core-core repulsion = 20361.537275 eV Total energy + Delta-G solvation = -3250.300850 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.96344 -39.72371 -38.70881 -35.71162 -33.58401 -31.85858 -31.22324 -30.97547 -30.09493 -27.95002 -26.53187 -24.82777 -24.48476 -22.84556 -22.08260 -21.22519 -20.25669 -19.18035 -18.66107 -17.42951 -17.01997 -16.46142 -16.03739 -15.94864 -15.67567 -15.50167 -15.17484 -15.03408 -14.51174 -14.18266 -14.11346 -13.99943 -13.76737 -13.50667 -13.29655 -13.09801 -12.87642 -12.70352 -12.55583 -12.43538 -12.23502 -12.17218 -12.02891 -12.01026 -11.82120 -11.35751 -11.22031 -11.02477 -10.43994 -10.23481 -9.72450 -9.36384 -9.22610 -9.06245 -8.56222 -6.33387 -0.19610 0.46439 0.86051 0.98481 1.19031 1.37664 1.49089 1.52389 1.97742 2.22501 2.75256 3.13814 3.38811 3.73211 3.82658 3.99018 4.15470 4.22691 4.34893 4.39863 4.43018 4.53120 4.59828 4.62379 4.65430 4.71688 4.75818 4.83270 4.99466 5.00590 5.06738 5.11118 5.19157 5.25537 5.31137 5.34514 5.41246 5.51219 5.75395 5.97064 6.13731 6.20567 6.26572 6.43726 6.47843 6.74200 6.95590 6.98161 7.07162 8.39925 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.002812 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.249186 B = 9954.394183 C =10051.797083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.157 4.157 3 C 0.189 3.811 4 C -0.131 4.131 5 N -0.668 5.668 6 C 0.130 3.870 7 C -0.190 4.190 8 C -0.076 4.076 9 C -0.240 4.240 10 C 0.078 3.922 11 C -0.506 4.506 12 H 0.070 0.930 13 C 0.032 3.968 14 N -0.835 5.835 15 Si 0.983 3.017 16 H -0.262 1.262 17 H -0.267 1.267 18 H -0.261 1.261 19 C -0.181 4.181 20 C -0.099 4.099 21 C 0.045 3.955 22 N -0.486 5.486 23 C 0.013 3.987 24 C -0.263 4.263 25 S 0.154 5.846 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.336 0.664 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.285 0.715 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.186 0.814 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 -7.136 -19.799 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.196 4.196 3 C 0.094 3.906 4 C -0.190 4.190 5 N -0.301 5.301 6 C 0.002 3.998 7 C -0.191 4.191 8 C -0.095 4.095 9 C -0.260 4.260 10 C 0.076 3.924 11 C -0.537 4.537 12 H 0.088 0.912 13 C -0.181 4.181 14 N -0.462 5.462 15 Si 0.804 3.196 16 H -0.186 1.186 17 H -0.191 1.191 18 H -0.186 1.186 19 C -0.201 4.201 20 C -0.118 4.118 21 C -0.233 4.233 22 N -0.200 5.200 23 C -0.138 4.138 24 C -0.402 4.402 25 S 0.409 5.591 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.203 0.797 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.732 -7.534 -19.498 21.432 hybrid contribution -1.070 0.941 0.572 1.536 sum 3.662 -6.594 -18.926 20.373 Atomic orbital electron populations 1.22041 0.95323 1.03186 1.01843 1.22356 0.96901 0.95908 1.04467 1.19550 0.96299 0.90165 0.84577 1.21842 0.91703 1.02530 1.02893 1.60638 1.16128 1.53045 1.00273 1.20589 0.99537 0.94097 0.85563 1.19365 0.96233 1.01563 1.01975 1.20650 0.98616 0.95018 0.95185 1.21224 0.96243 1.04634 1.03877 1.17956 0.90951 0.92210 0.91287 1.19789 1.22855 0.98423 1.12608 0.91180 1.26700 0.96310 0.95989 0.99067 1.69847 1.30453 1.10817 1.35132 0.85249 0.78127 0.78633 0.77630 1.18643 1.19090 1.18573 1.21284 1.00214 1.00332 0.98223 1.20790 0.95285 0.98830 0.96899 1.27144 1.02776 0.92480 1.00941 1.66179 1.19025 1.14578 1.20186 1.22199 1.00618 1.02603 0.88338 1.27606 1.10058 0.95441 1.07089 1.83738 1.57434 1.11829 1.06139 0.91989 0.90409 0.93670 0.89462 0.89420 0.92903 0.90688 0.90753 0.84446 0.94042 0.90337 0.87192 0.89021 0.90414 0.88255 0.87640 0.79691 0.77856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 9.15 71.98 0.66 -2.62 16 2 C -0.16 -2.96 3.99 30.60 0.12 -2.84 16 3 C 0.19 4.50 0.69 2.78 0.00 4.50 16 4 C -0.13 -2.92 8.22 71.98 0.59 -2.33 16 5 N -0.67 -20.33 5.88 -477.87 -2.81 -23.14 16 6 C 0.13 4.12 4.82 85.56 0.41 4.54 16 7 C -0.19 -7.94 5.41 -19.67 -0.11 -8.05 16 8 C -0.08 -3.43 9.67 22.22 0.21 -3.22 16 9 C -0.24 -12.35 9.80 22.73 0.22 -12.13 16 10 C 0.08 4.38 5.55 -21.29 -0.12 4.26 16 11 C -0.51 -28.54 9.06 23.46 0.21 -28.33 16 12 H 0.07 3.84 7.87 -2.91 -0.02 3.81 16 13 C 0.03 1.69 5.26 85.26 0.45 2.14 16 14 N -0.84 -45.02 10.85 21.83 0.24 -44.78 16 15 Si 0.98 39.74 29.57 68.60 2.03 41.77 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 19 C -0.18 -9.72 8.66 22.73 0.20 -9.52 16 20 C -0.10 -4.54 9.67 22.22 0.21 -4.33 16 21 C 0.04 1.10 5.64 88.52 0.50 1.60 16 22 N -0.49 -13.69 10.54 -191.45 -2.02 -15.71 16 23 C 0.01 0.28 11.35 83.66 0.95 1.23 16 24 C -0.26 -4.43 11.37 66.78 0.76 -3.67 16 25 S 0.15 2.72 19.28 -56.49 -1.09 1.63 16 26 H 0.06 1.17 5.55 -2.98 -0.02 1.16 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.04 1.08 6.14 -2.39 -0.01 1.06 16 29 H 0.09 1.33 7.41 -2.39 -0.02 1.31 16 30 H 0.09 1.62 6.75 -2.39 -0.02 1.61 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.55 6.40 -2.39 -0.02 1.54 16 33 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.34 10.93 6.79 -89.70 -0.61 10.32 16 35 H 0.04 1.20 6.24 -2.39 -0.01 1.19 16 36 H 0.08 2.35 6.24 -2.39 -0.01 2.34 16 37 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 39 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 40 H 0.10 5.61 6.23 -2.91 -0.02 5.60 16 41 H 0.11 4.25 8.06 -2.91 -0.02 4.22 16 42 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 43 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -64.24 354.38 2.05 -62.19 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.42 Total: 36.79 kcal Atomic # 6 Polarization: -64.04 SS G_CDS: 5.28 Total: -58.76 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -4.59 Total: -83.63 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.09 Total: 1.63 kcal Total: -64.24 2.05 -62.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342725555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.865 kcal (2) G-P(sol) polarization free energy of solvation -64.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds