Wall clock time and date at job start Tue Mar 31 2020 11:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46685 * 2 1 4 4 N 1.30835 * 125.95915 * 265.00044 * 3 2 1 5 5 C 1.33244 * 109.82681 * 179.97438 * 4 3 2 6 6 C 1.50707 * 125.52397 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47027 * 344.99983 * 6 5 4 8 8 C 1.53001 * 109.46670 * 104.99945 * 6 5 4 9 9 N 1.46496 * 109.47004 * 224.99835 * 6 5 4 10 10 S 1.65598 * 119.99819 * 145.00419 * 9 6 5 11 11 O 1.42101 * 104.27645 * 181.07298 * 10 9 6 12 12 O 1.42108 * 104.27735 * 308.92543 * 10 9 6 13 13 C 1.81395 * 104.45247 * 64.99668 * 10 9 6 14 14 C 1.53000 * 109.47329 * 179.97438 * 13 10 9 15 15 C 1.53001 * 109.46836 * 180.02562 * 14 13 10 16 16 C 1.50707 * 109.46624 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00369 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99659 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00313 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99814 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47276 * 60.00082 * 20 18 16 22 22 H 1.48499 * 109.47012 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47153 * 299.99732 * 20 18 16 24 24 N 1.30712 * 108.94650 * 0.02562 * 5 4 3 25 25 N 1.34424 * 125.96453 * 84.98060 * 3 2 1 26 26 H 0.97005 * 126.82354 * 0.02562 * 25 3 2 27 27 H 1.08993 * 109.47605 * 60.00144 * 1 2 3 28 28 H 1.09003 * 109.46746 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47135 * 299.99660 * 1 2 3 30 30 H 1.09001 * 109.46864 * 239.99972 * 2 1 3 31 31 H 1.09001 * 109.47361 * 119.99696 * 2 1 3 32 32 H 1.09001 * 109.47520 * 299.99856 * 8 6 5 33 33 H 1.08999 * 109.47364 * 60.00244 * 8 6 5 34 34 H 1.09002 * 109.46854 * 179.97438 * 8 6 5 35 35 H 0.96998 * 120.00316 * 325.00185 * 9 6 5 36 36 H 1.08996 * 109.47230 * 300.00463 * 13 10 9 37 37 H 1.09007 * 109.46717 * 60.00055 * 13 10 9 38 38 H 1.08999 * 109.47106 * 300.00594 * 14 13 10 39 39 H 1.09002 * 109.46547 * 60.00202 * 14 13 10 40 40 H 1.08999 * 109.47673 * 300.00143 * 15 14 13 41 41 H 1.08997 * 109.47177 * 60.01043 * 15 14 13 42 42 H 0.96997 * 119.99919 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3753 2.1144 -1.0550 5 6 2.7709 3.3322 -0.6862 6 6 3.2410 4.4197 -1.6177 7 1 3.4631 3.9904 -2.5947 8 6 2.1441 5.4765 -1.7623 9 7 4.4496 5.0418 -1.0715 10 16 5.6423 5.5700 -2.0916 11 8 6.6452 6.0803 -1.2237 12 8 5.9011 4.4558 -2.9348 13 6 4.8704 6.9148 -3.0328 14 6 5.8847 7.4929 -4.0217 15 6 5.2337 8.6276 -4.8151 16 6 6.2326 9.1965 -5.7896 17 1 7.2316 8.7892 -5.8385 18 6 5.8710 10.2371 -6.6188 19 7 4.6543 10.7328 -6.5596 20 14 7.1090 10.9418 -7.8272 21 1 7.5509 9.8756 -8.7615 22 1 6.4776 12.0441 -8.5963 23 1 8.2827 11.4665 -7.0841 24 7 2.6852 3.4305 0.6144 25 7 2.2056 2.1969 1.0838 26 1 2.0338 1.9532 2.0069 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.2448 5.0136 -2.1687 33 1 1.9220 5.9058 -0.7854 34 1 2.4842 6.2633 -2.4357 35 1 4.5512 5.1445 -0.1123 36 1 4.0096 6.5288 -3.5786 37 1 4.5449 7.6976 -2.3475 38 1 6.7453 7.8790 -3.4755 39 1 6.2105 6.7103 -4.7069 40 1 4.3729 8.2419 -5.3613 41 1 4.9083 9.4101 -4.1296 42 1 4.4001 11.4651 -7.1427 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342767985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:58 Heat of formation + Delta-G solvation = -41.498472 kcal Electronic energy + Delta-G solvation = -24002.739438 eV Core-core repulsion = 20337.809385 eV Total energy + Delta-G solvation = -3664.930053 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.29710 -38.33678 -37.68829 -37.08472 -36.44746 -34.95815 -34.15068 -33.55061 -31.31021 -30.43957 -29.59778 -25.78341 -25.42517 -25.06743 -22.40760 -21.88757 -21.55486 -20.46278 -19.23004 -18.61878 -18.37131 -17.65957 -17.20850 -16.74065 -16.50974 -16.31925 -15.78712 -15.69657 -15.14936 -14.98352 -14.50713 -14.45009 -14.10792 -13.67252 -13.53783 -13.42636 -13.24621 -13.18931 -13.17677 -13.01093 -12.77172 -12.71038 -12.61964 -12.49536 -12.37314 -12.14370 -11.97508 -11.69932 -11.38479 -11.27989 -11.17788 -11.11438 -10.66503 -10.56496 -10.53967 -8.19908 -6.30316 -0.81150 0.48206 1.41875 1.44255 1.51196 1.52121 1.62104 1.86410 2.41864 2.69932 2.80573 3.13645 3.21510 3.43826 3.68221 3.74205 3.90369 4.01116 4.09135 4.24680 4.29798 4.38187 4.41796 4.64929 4.67528 4.76267 4.97174 4.97654 4.99153 5.04925 5.10457 5.14905 5.21282 5.29237 5.35604 5.49207 5.67898 5.83003 5.91821 6.13698 6.23112 6.85185 6.99206 7.38561 8.91206 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.027078 B = 0.002485 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.802486 B =11266.916426 C =11696.704914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C 0.292 3.708 4 N -0.565 5.565 5 C 0.217 3.783 6 C 0.236 3.764 7 H 0.116 0.884 8 C -0.172 4.172 9 N -1.104 6.104 10 S 2.627 3.373 11 O -0.988 6.988 12 O -0.987 6.987 13 C -0.606 4.606 14 C -0.106 4.106 15 C 0.032 3.968 16 C -0.552 4.552 17 H 0.060 0.940 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.961 3.039 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.269 1.269 24 N -0.322 5.322 25 N -0.470 5.470 26 H 0.456 0.544 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.426 0.574 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.006 0.994 41 H 0.005 0.995 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.370 -21.599 17.651 30.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C 0.013 3.987 4 N -0.294 5.294 5 C -0.067 4.067 6 C 0.126 3.874 7 H 0.134 0.866 8 C -0.231 4.231 9 N -0.864 5.864 10 S 2.723 3.277 11 O -0.979 6.979 12 O -0.977 6.977 13 C -0.738 4.738 14 C -0.146 4.146 15 C -0.007 4.007 16 C -0.590 4.590 17 H 0.078 0.922 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.786 3.214 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.194 1.194 24 N -0.152 5.152 25 N -0.189 5.189 26 H 0.306 0.694 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.139 0.861 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.262 0.738 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.411 -21.333 17.403 29.434 hybrid contribution -0.128 0.841 0.208 0.876 sum -10.539 -20.493 17.612 29.003 Atomic orbital electron populations 1.21743 0.92237 1.04149 1.02187 1.20465 0.97437 0.83695 1.06876 1.25165 0.94071 0.97337 0.82090 1.70354 1.23125 1.04590 1.31363 1.24166 0.98307 0.93638 0.90613 1.19108 0.85175 0.88833 0.94286 0.86634 1.22457 0.97970 0.98301 1.04386 1.55468 1.34098 1.75790 1.21063 1.04381 0.73540 0.75760 0.74029 1.93540 1.56818 1.82302 1.65189 1.93546 1.83896 1.50416 1.69858 1.30598 1.12152 1.18190 1.12816 1.21330 0.96767 0.99693 0.96767 1.18960 0.95299 0.92484 0.93933 1.21722 0.99183 1.17530 1.20577 0.92224 1.25911 0.97287 0.97097 0.99250 1.70060 1.19885 1.26702 1.40228 0.85559 0.78984 0.78058 0.78829 1.19265 1.20694 1.19356 1.77827 1.22673 1.02683 1.12012 1.47912 1.50606 1.09054 1.11374 0.69446 0.93393 0.88890 0.92058 0.87669 0.86148 0.89814 0.90593 0.89485 0.73847 0.82975 0.82856 0.91567 0.91391 0.97512 0.97698 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.89 71.98 0.71 -0.02 16 2 C -0.04 -0.30 6.56 29.85 0.20 -0.10 16 3 C 0.29 4.63 7.49 138.23 1.04 5.66 16 4 N -0.56 -13.37 11.19 -179.72 -2.01 -15.38 16 5 C 0.22 5.28 6.98 138.63 0.97 6.25 16 6 C 0.24 5.43 3.35 44.25 0.15 5.58 16 7 H 0.12 2.76 7.48 -2.39 -0.02 2.74 16 8 C -0.17 -3.18 9.46 71.98 0.68 -2.50 16 9 N -1.10 -26.50 5.35 -172.52 -0.92 -27.42 16 10 S 2.63 78.83 5.44 -56.49 -0.31 78.52 16 11 O -0.99 -35.45 18.08 -127.65 -2.31 -37.76 16 12 O -0.99 -35.72 17.39 -127.65 -2.22 -37.94 16 13 C -0.61 -17.90 5.22 71.98 0.38 -17.52 16 14 C -0.11 -4.27 5.16 30.59 0.16 -4.12 16 15 C 0.03 1.61 4.97 29.85 0.15 1.76 16 16 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 18 C 0.00 0.16 5.46 84.65 0.46 0.62 16 19 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 20 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 N -0.32 -7.10 12.51 -51.33 -0.64 -7.74 16 25 N -0.47 -6.89 7.45 -50.71 -0.38 -7.26 16 26 H 0.46 2.99 8.96 -213.09 -1.91 1.08 16 27 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.49 5.78 -2.39 -0.01 1.48 16 35 H 0.43 9.38 8.56 -96.75 -0.83 8.55 16 36 H 0.15 3.82 6.77 -2.39 -0.02 3.80 16 37 H 0.15 3.89 8.14 -2.39 -0.02 3.87 16 38 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -81.78 366.52 -3.05 -84.83 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -1.69 Total: 14.56 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 5.12 Total: -35.46 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -3.67 Total: -113.09 kcal Atomic # 8 Polarization: -71.18 SS G_CDS: -4.53 Total: -75.70 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 78.83 SS G_CDS: -0.31 Total: 78.52 kcal Total: -81.78 -3.05 -84.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342767985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.331 kcal (2) G-P(sol) polarization free energy of solvation -81.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds