Wall clock time and date at job start Tue Mar 31 2020 11:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47140 * 2 1 4 4 C 1.33633 * 126.03717 * 89.98362 * 3 2 1 5 5 N 1.31779 * 114.50003 * 179.79134 * 4 3 2 6 6 C 1.29023 * 117.12563 * 0.47074 * 5 4 3 7 7 C 1.50694 * 124.91837 * 179.81922 * 6 5 4 8 8 N 1.46897 * 109.47666 * 89.69398 * 7 6 5 9 9 C 1.46896 * 111.00314 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47229 * 325.00208 * 9 8 7 11 11 C 1.53001 * 109.47252 * 205.00070 * 9 8 7 12 12 C 1.50701 * 109.47232 * 64.99821 * 11 9 8 13 13 H 1.08001 * 119.99717 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99813 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99578 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00242 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47103 * 89.99714 * 16 14 12 18 18 H 1.48504 * 109.47065 * 209.99608 * 16 14 12 19 19 H 1.48497 * 109.47228 * 329.99836 * 16 14 12 20 20 C 1.50703 * 109.47483 * 84.99935 * 9 8 7 21 21 C 1.38235 * 120.00292 * 220.00182 * 20 9 8 22 22 C 1.38230 * 119.99899 * 179.97438 * 21 20 9 23 23 C 1.38235 * 120.00326 * 359.95697 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99503 * 39.97475 * 20 9 8 26 26 S 1.70974 * 110.16585 * 359.54677 * 6 5 4 27 27 H 1.09005 * 109.47418 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47444 * 300.00155 * 1 2 3 29 29 H 1.08999 * 109.47371 * 60.00084 * 1 2 3 30 30 H 1.08999 * 109.47153 * 240.00255 * 2 1 3 31 31 H 1.08999 * 109.46847 * 119.99918 * 2 1 3 32 32 H 1.08009 * 122.75155 * 0.03378 * 4 3 2 33 33 H 1.09000 * 109.47326 * 329.69158 * 7 6 5 34 34 H 1.09000 * 109.47215 * 209.69566 * 7 6 5 35 35 H 1.00904 * 111.00141 * 303.95190 * 8 7 6 36 36 H 1.09007 * 109.47213 * 185.00060 * 11 9 8 37 37 H 1.08998 * 109.47120 * 304.99534 * 11 9 8 38 38 H 0.97007 * 120.00057 * 180.02562 * 15 14 12 39 39 H 1.08001 * 119.99730 * 359.97438 * 21 20 9 40 40 H 1.08000 * 120.00376 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 42 42 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00455 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2941 2.1622 1.0806 5 7 2.7286 3.3780 0.8170 6 6 2.8391 3.7067 -0.4257 7 6 3.3130 5.0475 -0.9245 8 7 4.7728 5.0219 -1.0862 9 6 5.2715 6.3155 -1.5717 10 1 4.5436 6.7521 -2.2555 11 6 6.5988 6.1082 -2.3039 12 6 6.3658 5.2808 -3.5417 13 1 5.3705 4.9375 -3.7823 14 6 7.4231 4.9630 -4.3676 15 7 7.2197 4.2413 -5.4481 16 14 9.1446 5.5573 -3.9518 17 1 9.8259 4.5465 -3.1037 18 1 9.9167 5.7534 -5.2051 19 1 9.0596 6.8445 -3.2162 20 6 5.4821 7.2434 -0.4030 21 6 5.1401 8.5785 -0.5100 22 6 5.3328 9.4294 0.5622 23 6 5.8667 8.9451 1.7417 24 6 6.2074 7.6097 1.8492 25 6 6.0168 6.7592 0.7762 26 16 2.3773 2.3984 -1.4248 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 2.1640 1.7936 2.0875 33 1 3.0406 5.8197 -0.2051 34 1 2.8448 5.2641 -1.8847 35 1 5.2276 4.7598 -0.2245 36 1 7.0130 7.0761 -2.5865 37 1 7.2989 5.5911 -1.6477 38 1 7.9636 4.0174 -6.0290 39 1 4.7223 8.9567 -1.4314 40 1 5.0660 10.4726 0.4785 41 1 6.0214 9.6108 2.5779 42 1 6.6249 7.2314 2.7706 43 1 6.2840 5.7161 0.8599 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344313297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:12 Heat of formation + Delta-G solvation = 61.902300 kcal Electronic energy + Delta-G solvation = -23209.683643 eV Core-core repulsion = 19960.086647 eV Total energy + Delta-G solvation = -3249.596996 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.67529 -39.23604 -36.30536 -34.45403 -32.77972 -31.62402 -30.69036 -29.42668 -28.70897 -26.48020 -24.49642 -23.50330 -22.58937 -22.12540 -21.67817 -19.74938 -19.03861 -17.99145 -17.13746 -16.35593 -15.54093 -15.28173 -15.03597 -14.57977 -14.44403 -14.27291 -14.13324 -13.81457 -13.59656 -13.34312 -13.11352 -12.69523 -12.59524 -12.49922 -12.28151 -12.02443 -11.70625 -11.65799 -11.47996 -11.18608 -11.01362 -10.82970 -10.73168 -10.24685 -10.16150 -9.71128 -9.43456 -9.10286 -9.03162 -8.70758 -8.67888 -8.43320 -8.34989 -7.87480 -5.92409 -3.86862 0.84065 1.52903 1.60244 1.61978 1.99437 2.94780 3.36904 3.44274 3.47682 4.02144 4.25763 4.54088 4.70481 4.83540 4.87310 5.05738 5.10136 5.10975 5.17685 5.23335 5.34635 5.42482 5.43205 5.51660 5.62905 5.65870 5.73282 5.76495 5.80856 5.91303 5.96302 5.99691 6.21060 6.25840 6.32397 6.54554 6.67567 6.69262 6.84030 7.13272 7.17768 7.23499 7.63898 7.79490 7.88700 7.95167 8.68033 9.17446 9.70366 11.21292 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009285 B = 0.004510 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.000187 B = 6206.718516 C = 8594.236842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C -0.239 4.239 4 C 0.032 3.968 5 N -0.478 5.478 6 C 0.056 3.944 7 C 0.133 3.867 8 N -0.651 5.651 9 C 0.141 3.859 10 H 0.084 0.916 11 C 0.005 3.995 12 C -0.491 4.491 13 H 0.078 0.922 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.871 3.129 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.268 1.268 20 C -0.099 4.099 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.134 4.134 24 C -0.118 4.118 25 C -0.116 4.116 26 S 0.166 5.834 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.167 0.833 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.339 0.661 36 H 0.021 0.979 37 H 0.014 0.986 38 H 0.260 0.740 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.223 -0.690 13.723 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.361 4.361 4 C -0.120 4.120 5 N -0.193 5.193 6 C -0.221 4.221 7 C 0.001 3.999 8 N -0.283 5.283 9 C 0.031 3.969 10 H 0.102 0.898 11 C -0.033 4.033 12 C -0.529 4.529 13 H 0.096 0.904 14 C -0.135 4.135 15 N -0.546 5.546 16 Si 0.699 3.301 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.192 1.192 20 C -0.101 4.101 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.152 4.152 24 C -0.136 4.136 25 C -0.135 4.135 26 S 0.422 5.578 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.184 0.816 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.159 0.841 36 H 0.039 0.961 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.056 -0.791 12.231 16.506 hybrid contribution 0.984 0.473 1.936 2.223 sum -10.072 -0.317 14.167 17.385 Atomic orbital electron populations 1.21796 0.94462 1.01862 1.02393 1.19942 0.95902 0.89190 1.03334 1.26075 1.11215 1.02692 0.96118 1.21553 1.01704 0.88985 0.99712 1.66287 1.16385 1.17673 1.18941 1.26918 1.02540 1.01507 0.91172 1.20497 0.91028 0.88181 1.00190 1.60701 1.01369 1.30566 1.35661 1.20732 1.00105 0.84769 0.91302 0.89809 1.19585 0.90799 0.96951 0.95934 1.20969 0.96642 1.30933 1.04384 0.90360 1.24957 0.98444 0.95088 0.95048 1.69904 1.31462 1.39067 1.14203 0.86923 0.85674 0.79826 0.77679 1.20533 1.21625 1.19232 1.21147 0.96812 0.95720 0.96414 1.21092 1.00440 0.93224 0.98608 1.21094 0.99911 0.99341 0.93609 1.21039 1.00735 0.95619 0.97821 1.21064 1.00251 0.93833 0.98465 1.20975 0.99484 0.99894 0.93137 1.84257 1.58082 1.05524 1.09918 0.92069 0.92442 0.92457 0.90583 0.90064 0.81567 0.92823 0.88953 0.84090 0.96119 0.96796 0.93029 0.86027 0.86528 0.86700 0.86539 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.15 0.37 -0.80 16 2 C -0.04 -0.41 6.47 -27.88 -0.18 -0.59 16 3 C -0.24 -2.97 5.85 -35.92 -0.21 -3.18 16 4 C 0.03 0.43 11.25 -19.19 -0.22 0.22 16 5 N -0.48 -7.49 10.54 -11.87 -0.13 -7.62 16 6 C 0.06 0.88 6.90 -13.46 -0.09 0.79 16 7 C 0.13 2.12 6.06 -4.98 -0.03 2.09 16 8 N -0.65 -11.90 5.94 -109.23 -0.65 -12.55 16 9 C 0.14 2.66 2.17 -68.86 -0.15 2.51 16 10 H 0.08 1.58 7.66 -51.93 -0.40 1.18 16 11 C 0.01 0.12 3.70 -27.88 -0.10 0.01 16 12 C -0.49 -13.57 9.39 -34.44 -0.32 -13.89 16 13 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 14 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 15 N -0.91 -27.87 13.96 55.43 0.77 -27.09 16 16 Si 0.87 21.89 27.47 -169.99 -4.67 17.22 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 20 C -0.10 -1.65 4.71 -104.62 -0.49 -2.14 16 21 C -0.12 -1.74 9.67 -39.59 -0.38 -2.12 16 22 C -0.12 -1.62 10.05 -39.59 -0.40 -2.02 16 23 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 24 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 25 C -0.12 -1.84 9.12 -39.58 -0.36 -2.20 16 26 S 0.17 2.40 23.18 -107.50 -2.49 -0.09 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.17 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.05 0.83 8.00 -51.93 -0.42 0.41 16 34 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 35 H 0.34 6.05 6.34 -39.29 -0.25 5.80 16 36 H 0.02 0.49 7.20 -51.92 -0.37 0.12 16 37 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.12 1.68 8.04 -52.49 -0.42 1.26 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 41 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.12 1.86 6.51 -52.49 -0.34 1.52 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -31.61 371.24 -11.43 -43.04 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.40 Total: 5.22 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: -3.46 Total: -23.72 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.00 Total: -47.26 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.49 Total: -0.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.61 -11.43 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344313297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.944 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds