Wall clock time and date at job start Tue Mar 31 2020 11:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47140 * 2 1 4 4 C 1.33633 * 126.03717 * 89.98362 * 3 2 1 5 5 N 1.31779 * 114.50003 * 179.79134 * 4 3 2 6 6 C 1.29023 * 117.12563 * 0.47074 * 5 4 3 7 7 C 1.50694 * 124.91837 * 179.81922 * 6 5 4 8 8 N 1.46897 * 109.47666 * 89.69398 * 7 6 5 9 9 C 1.46896 * 111.00314 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47229 * 325.00208 * 9 8 7 11 11 C 1.53001 * 109.47252 * 205.00070 * 9 8 7 12 12 C 1.50701 * 109.47232 * 64.99821 * 11 9 8 13 13 H 1.08001 * 119.99717 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99813 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99578 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00242 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47103 * 89.99714 * 16 14 12 18 18 H 1.48504 * 109.47065 * 209.99608 * 16 14 12 19 19 H 1.48497 * 109.47228 * 329.99836 * 16 14 12 20 20 C 1.50703 * 109.47483 * 84.99935 * 9 8 7 21 21 C 1.38235 * 120.00292 * 220.00182 * 20 9 8 22 22 C 1.38230 * 119.99899 * 179.97438 * 21 20 9 23 23 C 1.38235 * 120.00326 * 359.95697 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99503 * 39.97475 * 20 9 8 26 26 S 1.70974 * 110.16585 * 359.54677 * 6 5 4 27 27 H 1.09005 * 109.47418 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47444 * 300.00155 * 1 2 3 29 29 H 1.08999 * 109.47371 * 60.00084 * 1 2 3 30 30 H 1.08999 * 109.47153 * 240.00255 * 2 1 3 31 31 H 1.08999 * 109.46847 * 119.99918 * 2 1 3 32 32 H 1.08009 * 122.75155 * 0.03378 * 4 3 2 33 33 H 1.09000 * 109.47326 * 329.69158 * 7 6 5 34 34 H 1.09000 * 109.47215 * 209.69566 * 7 6 5 35 35 H 1.00904 * 111.00141 * 303.95190 * 8 7 6 36 36 H 1.09007 * 109.47213 * 185.00060 * 11 9 8 37 37 H 1.08998 * 109.47120 * 304.99534 * 11 9 8 38 38 H 0.97007 * 120.00057 * 180.02562 * 15 14 12 39 39 H 1.08001 * 119.99730 * 359.97438 * 21 20 9 40 40 H 1.08000 * 120.00376 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 42 42 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00455 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2941 2.1622 1.0806 5 7 2.7286 3.3780 0.8170 6 6 2.8391 3.7067 -0.4257 7 6 3.3130 5.0475 -0.9245 8 7 4.7728 5.0219 -1.0862 9 6 5.2715 6.3155 -1.5717 10 1 4.5436 6.7521 -2.2555 11 6 6.5988 6.1082 -2.3039 12 6 6.3658 5.2808 -3.5417 13 1 5.3705 4.9375 -3.7823 14 6 7.4231 4.9630 -4.3676 15 7 7.2197 4.2413 -5.4481 16 14 9.1446 5.5573 -3.9518 17 1 9.8259 4.5465 -3.1037 18 1 9.9167 5.7534 -5.2051 19 1 9.0596 6.8445 -3.2162 20 6 5.4821 7.2434 -0.4030 21 6 5.1401 8.5785 -0.5100 22 6 5.3328 9.4294 0.5622 23 6 5.8667 8.9451 1.7417 24 6 6.2074 7.6097 1.8492 25 6 6.0168 6.7592 0.7762 26 16 2.3773 2.3984 -1.4248 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 2.1640 1.7936 2.0875 33 1 3.0406 5.8197 -0.2051 34 1 2.8448 5.2641 -1.8847 35 1 5.2276 4.7598 -0.2245 36 1 7.0130 7.0761 -2.5865 37 1 7.2989 5.5911 -1.6477 38 1 7.9636 4.0174 -6.0290 39 1 4.7223 8.9567 -1.4314 40 1 5.0660 10.4726 0.4785 41 1 6.0214 9.6108 2.5779 42 1 6.6249 7.2314 2.7706 43 1 6.2840 5.7161 0.8599 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344313297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:12 Heat of formation + Delta-G solvation = 43.667519 kcal Electronic energy + Delta-G solvation = -23210.474362 eV Core-core repulsion = 19960.086647 eV Total energy + Delta-G solvation = -3250.387716 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.83255 -40.39292 -37.63388 -35.44948 -34.70055 -33.05637 -31.77846 -30.92684 -29.95621 -27.72184 -26.01732 -24.61432 -23.61153 -23.33015 -23.13177 -21.20569 -20.12714 -19.18841 -18.87042 -17.84147 -16.78853 -16.53986 -16.21539 -16.08871 -15.61472 -15.54527 -15.22096 -14.97505 -14.83298 -14.70842 -14.29212 -14.18106 -13.88973 -13.71024 -13.67088 -13.20370 -13.14032 -12.87858 -12.55079 -12.43631 -12.33950 -12.22428 -11.87893 -11.74480 -11.69571 -11.63832 -11.21634 -10.67235 -10.60749 -10.17739 -9.81066 -9.78084 -9.54616 -9.27059 -8.16784 -6.15111 -0.27927 0.41971 0.47818 0.52421 0.87896 1.36952 1.38102 1.48844 1.83688 2.41971 2.90351 3.07446 3.18889 3.50184 3.84933 3.88483 3.95579 4.05700 4.14758 4.18206 4.30622 4.34186 4.40632 4.47659 4.55069 4.60225 4.65622 4.73540 4.80012 4.86246 5.03351 5.11102 5.13582 5.16399 5.21935 5.26727 5.36013 5.37888 5.58779 5.62536 5.65211 5.74563 6.15016 6.15937 6.40190 6.49993 6.76899 6.91556 7.45252 9.00113 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009285 B = 0.004510 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.000187 B = 6206.718516 C = 8594.236842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.046 4.046 3 C -0.217 4.217 4 C 0.016 3.984 5 N -0.489 5.489 6 C 0.036 3.964 7 C 0.143 3.857 8 N -0.667 5.667 9 C 0.151 3.849 10 H 0.075 0.925 11 C 0.011 3.989 12 C -0.487 4.487 13 H 0.042 0.958 14 C 0.004 3.996 15 N -0.953 5.953 16 Si 0.937 3.063 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.252 1.252 20 C -0.117 4.117 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.131 4.131 26 S 0.137 5.863 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.196 0.804 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.339 0.661 36 H 0.019 0.981 37 H 0.010 0.990 38 H 0.261 0.739 39 H 0.126 0.874 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.140 0.860 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.057 0.059 16.526 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.339 4.339 4 C -0.135 4.135 5 N -0.204 5.204 6 C -0.241 4.241 7 C 0.011 3.989 8 N -0.300 5.300 9 C 0.041 3.959 10 H 0.093 0.907 11 C -0.027 4.027 12 C -0.526 4.526 13 H 0.060 0.940 14 C -0.191 4.191 15 N -0.596 5.596 16 Si 0.762 3.238 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.176 1.176 20 C -0.119 4.119 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.150 4.150 26 S 0.392 5.608 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.212 0.788 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.160 0.840 36 H 0.037 0.963 37 H 0.028 0.972 38 H 0.070 0.930 39 H 0.144 0.856 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.157 0.843 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.903 -0.026 15.058 18.591 hybrid contribution 0.819 0.180 1.119 1.398 sum -10.084 0.154 16.177 19.063 Atomic orbital electron populations 1.21777 0.93218 1.03120 1.02042 1.20142 0.96855 0.87061 1.04500 1.26481 1.09338 1.03645 0.94421 1.22000 1.01917 0.88368 1.01178 1.66278 1.16350 1.18962 1.18848 1.26774 1.04172 1.01662 0.91535 1.20347 0.89500 0.88907 1.00137 1.60594 1.02893 1.30585 1.35892 1.20349 0.97527 0.85798 0.92189 0.90657 1.19453 0.93305 0.95599 0.94296 1.21220 0.95022 1.30508 1.05815 0.93958 1.25806 1.02858 0.95507 0.94969 1.70059 1.32761 1.41097 1.15674 0.85864 0.80409 0.79936 0.77606 1.20030 1.21311 1.17578 1.20865 0.99120 0.95989 0.95914 1.21271 1.00749 0.92862 0.99770 1.21446 0.98908 1.00480 0.92965 1.21471 0.98973 0.95624 0.98565 1.21372 0.99786 0.94170 0.98600 1.21037 1.00167 1.00088 0.93668 1.84334 1.58528 1.06285 1.11633 0.90027 0.92179 0.93456 0.90396 0.87829 0.78770 0.92400 0.89352 0.84038 0.96264 0.97162 0.93032 0.85577 0.83637 0.83407 0.84250 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.89 71.98 0.71 -1.28 16 2 C -0.05 -0.75 6.47 29.85 0.19 -0.56 16 3 C -0.22 -5.19 5.85 24.64 0.14 -5.05 16 4 C 0.02 0.41 11.25 83.66 0.94 1.35 16 5 N -0.49 -15.24 10.54 -191.46 -2.02 -17.26 16 6 C 0.04 1.15 6.90 88.52 0.61 1.76 16 7 C 0.14 4.76 6.06 85.56 0.52 5.27 16 8 N -0.67 -25.42 5.94 -499.48 -2.97 -28.38 16 9 C 0.15 5.89 2.17 44.17 0.10 5.99 16 10 H 0.08 2.98 7.66 -2.39 -0.02 2.96 16 11 C 0.01 0.53 3.70 29.85 0.11 0.64 16 12 C -0.49 -27.93 9.39 25.60 0.24 -27.69 16 13 H 0.04 2.67 7.99 -2.91 -0.02 2.64 16 14 C 0.00 0.24 5.47 84.65 0.46 0.70 16 15 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 16 Si 0.94 45.66 27.47 68.60 1.88 47.55 16 17 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 19 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 20 C -0.12 -3.87 4.71 -19.87 -0.09 -3.97 16 21 C -0.13 -3.71 9.67 22.27 0.22 -3.49 16 22 C -0.12 -2.84 10.05 22.27 0.22 -2.61 16 23 C -0.13 -2.86 10.05 22.27 0.22 -2.63 16 24 C -0.12 -3.05 10.05 22.27 0.22 -2.82 16 25 C -0.13 -4.02 9.12 22.27 0.20 -3.82 16 26 S 0.14 4.08 23.18 -56.49 -1.31 2.77 16 27 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.20 3.68 8.06 -2.91 -0.02 3.65 16 33 H 0.06 1.85 8.00 -2.39 -0.02 1.83 16 34 H 0.09 2.92 8.06 -2.39 -0.02 2.90 16 35 H 0.34 12.55 6.34 -89.69 -0.57 11.98 16 36 H 0.02 0.91 7.20 -2.38 -0.02 0.89 16 37 H 0.01 0.48 7.57 -2.39 -0.02 0.47 16 38 H 0.26 15.62 8.31 -92.70 -0.77 14.84 16 39 H 0.13 3.42 8.04 -2.91 -0.02 3.39 16 40 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 41 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 42 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 43 H 0.11 3.52 6.51 -2.91 -0.02 3.50 16 Total: -1.00 -69.92 371.24 1.29 -68.62 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.38 Total: 25.20 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 5.02 Total: -38.21 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -4.68 Total: -105.93 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.88 Total: 47.55 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.31 Total: 2.77 kcal Total: -69.92 1.29 -68.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344313297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.291 kcal (2) G-P(sol) polarization free energy of solvation -69.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds