Wall clock time and date at job start Tue Mar 31 2020 11:12:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.50704 * 109.47140 * 2 1
4 4 C 1.33633 * 126.03717 * 89.98362 * 3 2 1
5 5 N 1.31779 * 114.50003 * 179.79134 * 4 3 2
6 6 C 1.29023 * 117.12563 * 0.47074 * 5 4 3
7 7 C 1.50694 * 124.91837 * 179.81922 * 6 5 4
8 8 N 1.46897 * 109.47666 * 89.69398 * 7 6 5
9 9 C 1.46896 * 111.00314 * 180.02562 * 8 7 6
10 10 H 1.09000 * 109.47229 * 325.00208 * 9 8 7
11 11 C 1.53001 * 109.47252 * 205.00070 * 9 8 7
12 12 C 1.50701 * 109.47232 * 64.99821 * 11 9 8
13 13 H 1.08001 * 119.99717 * 0.02562 * 12 11 9
14 14 C 1.37876 * 119.99813 * 179.97438 * 12 11 9
15 15 N 1.31516 * 119.99578 * 180.02562 * 14 12 11
16 16 Si 1.86800 * 120.00242 * 0.02562 * 14 12 11
17 17 H 1.48499 * 109.47103 * 89.99714 * 16 14 12
18 18 H 1.48504 * 109.47065 * 209.99608 * 16 14 12
19 19 H 1.48497 * 109.47228 * 329.99836 * 16 14 12
20 20 C 1.50703 * 109.47483 * 84.99935 * 9 8 7
21 21 C 1.38235 * 120.00292 * 220.00182 * 20 9 8
22 22 C 1.38230 * 119.99899 * 179.97438 * 21 20 9
23 23 C 1.38235 * 120.00326 * 359.95697 * 22 21 20
24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21
25 25 C 1.38234 * 119.99503 * 39.97475 * 20 9 8
26 26 S 1.70974 * 110.16585 * 359.54677 * 6 5 4
27 27 H 1.09005 * 109.47418 * 179.97438 * 1 2 3
28 28 H 1.08995 * 109.47444 * 300.00155 * 1 2 3
29 29 H 1.08999 * 109.47371 * 60.00084 * 1 2 3
30 30 H 1.08999 * 109.47153 * 240.00255 * 2 1 3
31 31 H 1.08999 * 109.46847 * 119.99918 * 2 1 3
32 32 H 1.08009 * 122.75155 * 0.03378 * 4 3 2
33 33 H 1.09000 * 109.47326 * 329.69158 * 7 6 5
34 34 H 1.09000 * 109.47215 * 209.69566 * 7 6 5
35 35 H 1.00904 * 111.00141 * 303.95190 * 8 7 6
36 36 H 1.09007 * 109.47213 * 185.00060 * 11 9 8
37 37 H 1.08998 * 109.47120 * 304.99534 * 11 9 8
38 38 H 0.97007 * 120.00057 * 180.02562 * 15 14 12
39 39 H 1.08001 * 119.99730 * 359.97438 * 21 20 9
40 40 H 1.08000 * 120.00376 * 179.97438 * 22 21 20
41 41 H 1.08000 * 120.00616 * 179.72578 * 23 22 21
42 42 H 1.08001 * 120.00299 * 179.97438 * 24 23 22
43 43 H 1.07997 * 120.00455 * 0.02562 * 25 20 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2941 2.1622 1.0806
5 7 2.7286 3.3780 0.8170
6 6 2.8391 3.7067 -0.4257
7 6 3.3130 5.0475 -0.9245
8 7 4.7728 5.0219 -1.0862
9 6 5.2715 6.3155 -1.5717
10 1 4.5436 6.7521 -2.2555
11 6 6.5988 6.1082 -2.3039
12 6 6.3658 5.2808 -3.5417
13 1 5.3705 4.9375 -3.7823
14 6 7.4231 4.9630 -4.3676
15 7 7.2197 4.2413 -5.4481
16 14 9.1446 5.5573 -3.9518
17 1 9.8259 4.5465 -3.1037
18 1 9.9167 5.7534 -5.2051
19 1 9.0596 6.8445 -3.2162
20 6 5.4821 7.2434 -0.4030
21 6 5.1401 8.5785 -0.5100
22 6 5.3328 9.4294 0.5622
23 6 5.8667 8.9451 1.7417
24 6 6.2074 7.6097 1.8492
25 6 6.0168 6.7592 0.7762
26 16 2.3773 2.3984 -1.4248
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3634 0.5138 0.8899
29 1 -0.3634 0.5138 -0.8900
30 1 1.8933 -0.5138 -0.8900
31 1 1.8932 -0.5138 0.8900
32 1 2.1640 1.7936 2.0875
33 1 3.0406 5.8197 -0.2051
34 1 2.8448 5.2641 -1.8847
35 1 5.2276 4.7598 -0.2245
36 1 7.0130 7.0761 -2.5865
37 1 7.2989 5.5911 -1.6477
38 1 7.9636 4.0174 -6.0290
39 1 4.7223 8.9567 -1.4314
40 1 5.0660 10.4726 0.4785
41 1 6.0214 9.6108 2.5779
42 1 6.6249 7.2314 2.7706
43 1 6.2840 5.7161 0.8599
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000344313297.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:12:12
Heat of formation + Delta-G solvation = 43.667519 kcal
Electronic energy + Delta-G solvation = -23210.474362 eV
Core-core repulsion = 19960.086647 eV
Total energy + Delta-G solvation = -3250.387716 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 316.130 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.83255 -40.39292 -37.63388 -35.44948 -34.70055 -33.05637 -31.77846 -30.92684
-29.95621 -27.72184 -26.01732 -24.61432 -23.61153 -23.33015 -23.13177 -21.20569
-20.12714 -19.18841 -18.87042 -17.84147 -16.78853 -16.53986 -16.21539 -16.08871
-15.61472 -15.54527 -15.22096 -14.97505 -14.83298 -14.70842 -14.29212 -14.18106
-13.88973 -13.71024 -13.67088 -13.20370 -13.14032 -12.87858 -12.55079 -12.43631
-12.33950 -12.22428 -11.87893 -11.74480 -11.69571 -11.63832 -11.21634 -10.67235
-10.60749 -10.17739 -9.81066 -9.78084 -9.54616 -9.27059 -8.16784 -6.15111
-0.27927 0.41971 0.47818 0.52421 0.87896 1.36952 1.38102 1.48844
1.83688 2.41971 2.90351 3.07446 3.18889 3.50184 3.84933 3.88483
3.95579 4.05700 4.14758 4.18206 4.30622 4.34186 4.40632 4.47659
4.55069 4.60225 4.65622 4.73540 4.80012 4.86246 5.03351 5.11102
5.13582 5.16399 5.21935 5.26727 5.36013 5.37888 5.58779 5.62536
5.65211 5.74563 6.15016 6.15937 6.40190 6.49993 6.76899 6.91556
7.45252 9.00113
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.009285 B = 0.004510 C = 0.003257
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3015.000187 B = 6206.718516 C = 8594.236842
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.046 4.046
3 C -0.217 4.217
4 C 0.016 3.984
5 N -0.489 5.489
6 C 0.036 3.964
7 C 0.143 3.857
8 N -0.667 5.667
9 C 0.151 3.849
10 H 0.075 0.925
11 C 0.011 3.989
12 C -0.487 4.487
13 H 0.042 0.958
14 C 0.004 3.996
15 N -0.953 5.953
16 Si 0.937 3.063
17 H -0.275 1.275
18 H -0.287 1.287
19 H -0.252 1.252
20 C -0.117 4.117
21 C -0.128 4.128
22 C -0.120 4.120
23 C -0.128 4.128
24 C -0.121 4.121
25 C -0.131 4.131
26 S 0.137 5.863
27 H 0.081 0.919
28 H 0.059 0.941
29 H 0.046 0.954
30 H 0.077 0.923
31 H 0.103 0.897
32 H 0.196 0.804
33 H 0.058 0.942
34 H 0.088 0.912
35 H 0.339 0.661
36 H 0.019 0.981
37 H 0.010 0.990
38 H 0.261 0.739
39 H 0.126 0.874
40 H 0.146 0.854
41 H 0.148 0.852
42 H 0.140 0.860
43 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.057 0.059 16.526 19.884
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.086 4.086
3 C -0.339 4.339
4 C -0.135 4.135
5 N -0.204 5.204
6 C -0.241 4.241
7 C 0.011 3.989
8 N -0.300 5.300
9 C 0.041 3.959
10 H 0.093 0.907
11 C -0.027 4.027
12 C -0.526 4.526
13 H 0.060 0.940
14 C -0.191 4.191
15 N -0.596 5.596
16 Si 0.762 3.238
17 H -0.200 1.200
18 H -0.213 1.213
19 H -0.176 1.176
20 C -0.119 4.119
21 C -0.147 4.147
22 C -0.138 4.138
23 C -0.146 4.146
24 C -0.139 4.139
25 C -0.150 4.150
26 S 0.392 5.608
27 H 0.100 0.900
28 H 0.078 0.922
29 H 0.065 0.935
30 H 0.096 0.904
31 H 0.122 0.878
32 H 0.212 0.788
33 H 0.076 0.924
34 H 0.106 0.894
35 H 0.160 0.840
36 H 0.037 0.963
37 H 0.028 0.972
38 H 0.070 0.930
39 H 0.144 0.856
40 H 0.164 0.836
41 H 0.166 0.834
42 H 0.157 0.843
43 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -10.903 -0.026 15.058 18.591
hybrid contribution 0.819 0.180 1.119 1.398
sum -10.084 0.154 16.177 19.063
Atomic orbital electron populations
1.21777 0.93218 1.03120 1.02042 1.20142 0.96855 0.87061 1.04500
1.26481 1.09338 1.03645 0.94421 1.22000 1.01917 0.88368 1.01178
1.66278 1.16350 1.18962 1.18848 1.26774 1.04172 1.01662 0.91535
1.20347 0.89500 0.88907 1.00137 1.60594 1.02893 1.30585 1.35892
1.20349 0.97527 0.85798 0.92189 0.90657 1.19453 0.93305 0.95599
0.94296 1.21220 0.95022 1.30508 1.05815 0.93958 1.25806 1.02858
0.95507 0.94969 1.70059 1.32761 1.41097 1.15674 0.85864 0.80409
0.79936 0.77606 1.20030 1.21311 1.17578 1.20865 0.99120 0.95989
0.95914 1.21271 1.00749 0.92862 0.99770 1.21446 0.98908 1.00480
0.92965 1.21471 0.98973 0.95624 0.98565 1.21372 0.99786 0.94170
0.98600 1.21037 1.00167 1.00088 0.93668 1.84334 1.58528 1.06285
1.11633 0.90027 0.92179 0.93456 0.90396 0.87829 0.78770 0.92400
0.89352 0.84038 0.96264 0.97162 0.93032 0.85577 0.83637 0.83407
0.84250 0.86926
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.99 9.89 71.98 0.71 -1.28 16
2 C -0.05 -0.75 6.47 29.85 0.19 -0.56 16
3 C -0.22 -5.19 5.85 24.64 0.14 -5.05 16
4 C 0.02 0.41 11.25 83.66 0.94 1.35 16
5 N -0.49 -15.24 10.54 -191.46 -2.02 -17.26 16
6 C 0.04 1.15 6.90 88.52 0.61 1.76 16
7 C 0.14 4.76 6.06 85.56 0.52 5.27 16
8 N -0.67 -25.42 5.94 -499.48 -2.97 -28.38 16
9 C 0.15 5.89 2.17 44.17 0.10 5.99 16
10 H 0.08 2.98 7.66 -2.39 -0.02 2.96 16
11 C 0.01 0.53 3.70 29.85 0.11 0.64 16
12 C -0.49 -27.93 9.39 25.60 0.24 -27.69 16
13 H 0.04 2.67 7.99 -2.91 -0.02 2.64 16
14 C 0.00 0.24 5.47 84.65 0.46 0.70 16
15 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16
16 Si 0.94 45.66 27.47 68.60 1.88 47.55 16
17 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16
18 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16
19 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16
20 C -0.12 -3.87 4.71 -19.87 -0.09 -3.97 16
21 C -0.13 -3.71 9.67 22.27 0.22 -3.49 16
22 C -0.12 -2.84 10.05 22.27 0.22 -2.61 16
23 C -0.13 -2.86 10.05 22.27 0.22 -2.63 16
24 C -0.12 -3.05 10.05 22.27 0.22 -2.82 16
25 C -0.13 -4.02 9.12 22.27 0.20 -3.82 16
26 S 0.14 4.08 23.18 -56.49 -1.31 2.77 16
27 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16
28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16
29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16
30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16
32 H 0.20 3.68 8.06 -2.91 -0.02 3.65 16
33 H 0.06 1.85 8.00 -2.39 -0.02 1.83 16
34 H 0.09 2.92 8.06 -2.39 -0.02 2.90 16
35 H 0.34 12.55 6.34 -89.69 -0.57 11.98 16
36 H 0.02 0.91 7.20 -2.38 -0.02 0.89 16
37 H 0.01 0.48 7.57 -2.39 -0.02 0.47 16
38 H 0.26 15.62 8.31 -92.70 -0.77 14.84 16
39 H 0.13 3.42 8.04 -2.91 -0.02 3.39 16
40 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16
41 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16
42 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16
43 H 0.11 3.52 6.51 -2.91 -0.02 3.50 16
Total: -1.00 -69.92 371.24 1.29 -68.62
By element:
Atomic # 1 Polarization: 24.82 SS G_CDS: 0.38 Total: 25.20 kcal
Atomic # 6 Polarization: -43.24 SS G_CDS: 5.02 Total: -38.21 kcal
Atomic # 7 Polarization: -101.25 SS G_CDS: -4.68 Total: -105.93 kcal
Atomic # 14 Polarization: 45.66 SS G_CDS: 1.88 Total: 47.55 kcal
Atomic # 16 Polarization: 4.08 SS G_CDS: -1.31 Total: 2.77 kcal
Total: -69.92 1.29 -68.62 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344313297.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.291 kcal
(2) G-P(sol) polarization free energy of solvation -69.916 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.375 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.624 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds