Wall clock time and date at job start Tue Mar 31 2020 11:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47100 * 2 1 4 4 N 1.29034 * 124.92034 * 90.02445 * 3 2 1 5 5 C 1.31778 * 117.12643 * 179.97438 * 4 3 2 6 6 C 1.33639 * 114.50302 * 359.97438 * 5 4 3 7 7 C 1.50698 * 126.04256 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.46767 * 90.00063 * 7 6 5 9 9 C 1.46904 * 111.00002 * 183.07986 * 8 7 6 10 10 H 1.08998 * 109.46803 * 325.36262 * 9 8 7 11 11 C 1.53006 * 109.47280 * 85.35893 * 9 8 7 12 12 C 1.50694 * 109.47060 * 185.68963 * 11 9 8 13 13 H 1.08002 * 120.00104 * 5.12068 * 12 11 9 14 14 C 1.37880 * 120.00020 * 185.11804 * 12 11 9 15 15 N 1.31512 * 119.99506 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00198 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46926 * 90.00054 * 16 14 12 18 18 H 1.48499 * 109.47095 * 209.99870 * 16 14 12 19 19 H 1.48500 * 109.47002 * 330.00082 * 16 14 12 20 20 C 1.50701 * 109.47459 * 205.36068 * 9 8 7 21 21 C 1.38227 * 119.99828 * 319.72909 * 20 9 8 22 22 C 1.38236 * 119.99997 * 179.80696 * 21 20 9 23 23 C 1.38233 * 119.99772 * 0.39890 * 22 21 20 24 24 C 1.38230 * 120.00282 * 359.84687 * 23 22 21 25 25 C 1.38237 * 119.99925 * 139.99431 * 20 9 8 26 26 S 1.70985 * 124.91626 * 270.33482 * 3 2 1 27 27 H 1.09005 * 109.47021 * 300.00557 * 1 2 3 28 28 H 1.09004 * 109.47198 * 59.99749 * 1 2 3 29 29 H 1.08995 * 109.47592 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47364 * 239.99769 * 2 1 3 31 31 H 1.09004 * 109.46793 * 119.99386 * 2 1 3 32 32 H 1.07997 * 122.75289 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.46960 * 330.00264 * 7 6 5 34 34 H 1.08997 * 109.47347 * 209.99604 * 7 6 5 35 35 H 1.00894 * 111.00586 * 59.12692 * 8 7 6 36 36 H 1.09004 * 109.47035 * 305.69298 * 11 9 8 37 37 H 1.08998 * 109.46494 * 65.69246 * 11 9 8 38 38 H 0.97006 * 119.99658 * 179.97438 * 15 14 12 39 39 H 1.08000 * 120.00515 * 359.97438 * 21 20 9 40 40 H 1.08002 * 120.00362 * 180.22404 * 22 21 20 41 41 H 1.08003 * 119.99793 * 179.83615 * 23 22 21 42 42 H 1.08001 * 120.00552 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00431 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2789 2.1170 1.0580 5 6 2.7146 3.3478 0.8793 6 6 2.8431 3.7099 -0.4007 7 6 3.3181 5.0502 -0.8996 8 7 4.7779 5.0230 -1.0615 9 6 5.2860 6.3371 -1.4775 10 1 4.5590 6.8169 -2.1326 11 6 5.5136 7.2104 -0.2420 12 6 5.9006 8.6012 -0.6743 13 1 5.8964 8.8617 -1.7224 14 6 6.2600 9.5412 0.2682 15 7 6.2645 9.2241 1.5446 16 14 6.7390 11.2654 -0.2676 17 1 5.5296 12.1265 -0.3032 18 1 7.7194 11.8285 0.6952 19 1 7.3486 11.2118 -1.6206 20 6 6.5883 6.1616 -2.2154 21 6 7.5160 5.2387 -1.7701 22 6 8.7088 5.0749 -2.4492 23 6 8.9773 5.8399 -3.5689 24 6 8.0518 6.7663 -4.0112 25 6 6.8573 6.9274 -3.3343 26 16 2.3508 2.3462 -1.4020 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.9486 4.0097 1.6999 33 1 3.0467 5.8227 -0.1801 34 1 2.8501 5.2672 -1.8597 35 1 5.0562 4.3049 -1.7133 36 1 4.5966 7.2545 0.3457 37 1 6.3128 6.7825 0.3631 38 1 6.5177 9.8853 2.2077 39 1 7.3079 4.6437 -0.8931 40 1 9.4322 4.3513 -2.1034 41 1 9.9104 5.7137 -4.0979 42 1 8.2617 7.3643 -4.8858 43 1 6.1341 7.6512 -3.6800 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344830937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:25 Heat of formation + Delta-G solvation = 38.620221 kcal Electronic energy + Delta-G solvation = -23044.947073 eV Core-core repulsion = 19794.340490 eV Total energy + Delta-G solvation = -3250.606583 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.77889 -40.31289 -37.70137 -35.36993 -34.69355 -33.12943 -31.67267 -30.52757 -30.13083 -27.39483 -26.03283 -24.77134 -23.76272 -23.53681 -23.00872 -21.02624 -20.34614 -18.96346 -18.59789 -17.74940 -16.79443 -16.54436 -16.29670 -16.02366 -15.70144 -15.42930 -15.29010 -14.98980 -14.75869 -14.60559 -14.17981 -14.11634 -14.08336 -13.64766 -13.35633 -13.11832 -13.07159 -12.92625 -12.57869 -12.51444 -12.47506 -12.18414 -11.98540 -11.78945 -11.72257 -11.45142 -11.21649 -10.60707 -10.52207 -10.27304 -9.76485 -9.66674 -9.46658 -9.33111 -8.15719 -6.23800 -0.29245 0.34650 0.61532 0.64571 0.73847 1.38516 1.39574 1.49831 1.81922 2.41341 3.01053 3.16933 3.19168 3.33172 3.82668 4.00551 4.01599 4.09023 4.15338 4.28690 4.29263 4.34141 4.39854 4.50862 4.61893 4.73720 4.78735 4.82261 4.85676 4.96331 4.99873 5.06329 5.19522 5.22810 5.28967 5.34406 5.49186 5.62612 5.64531 5.72270 5.76561 5.84230 6.10410 6.27399 6.34302 6.47995 6.76148 6.91515 7.43697 8.96405 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.003409 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.464502 B = 8211.943945 C = 9665.066434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.043 3.957 4 N -0.501 5.501 5 C 0.039 3.961 6 C -0.220 4.220 7 C 0.142 3.858 8 N -0.679 5.679 9 C 0.143 3.857 10 H 0.040 0.960 11 C 0.057 3.943 12 C -0.522 4.522 13 H 0.062 0.938 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.953 3.047 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.263 1.263 20 C -0.071 4.071 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.123 4.123 26 S 0.152 5.848 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.167 0.833 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.341 0.659 36 H -0.011 1.011 37 H -0.009 1.009 38 H 0.260 0.740 39 H 0.115 0.885 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 -17.125 -11.049 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 C -0.234 4.234 4 N -0.216 5.216 5 C -0.112 4.112 6 C -0.341 4.341 7 C 0.011 3.989 8 N -0.311 5.311 9 C 0.034 3.966 10 H 0.058 0.942 11 C 0.019 3.981 12 C -0.560 4.560 13 H 0.080 0.920 14 C -0.195 4.195 15 N -0.573 5.573 16 Si 0.778 3.222 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.187 1.187 20 C -0.071 4.071 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.141 4.141 26 S 0.407 5.593 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.184 0.816 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.160 0.840 36 H 0.007 0.993 37 H 0.010 0.990 38 H 0.069 0.931 39 H 0.133 0.867 40 H 0.157 0.843 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.995 -17.381 -10.774 21.310 hybrid contribution 0.200 2.038 0.521 2.113 sum -5.795 -15.343 -10.254 19.342 Atomic orbital electron populations 1.21760 0.92625 1.03755 1.02013 1.20425 0.97361 0.85662 1.05440 1.27700 1.02117 1.02851 0.90777 1.66311 1.16081 1.06294 1.32872 1.21734 1.00621 0.92390 0.96500 1.25827 1.10168 1.01550 0.96599 1.20172 0.87884 0.90832 0.99978 1.60513 1.10087 1.06165 1.54355 1.20420 0.92182 0.88477 0.95508 0.94167 1.18815 0.94632 0.92715 0.91893 1.21542 1.44387 0.96774 0.93344 0.91971 1.25834 0.95893 1.02832 0.94921 1.70115 1.49994 1.35821 1.01404 0.85621 0.78164 0.80003 0.78374 1.19866 1.21268 1.18711 1.19850 0.96447 0.96152 0.94663 1.21059 0.94349 0.98839 0.99564 1.21378 0.96687 1.00482 0.96116 1.21397 0.99987 0.96335 0.97121 1.21355 0.93616 0.98983 1.00622 1.21138 0.98596 0.98714 0.95687 1.83591 1.59891 1.04397 1.11395 0.93541 0.92203 0.89115 0.87357 0.88627 0.81590 0.90322 0.92967 0.84004 0.99299 0.99011 0.93127 0.86683 0.84297 0.83547 0.84146 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 71.98 0.71 -1.09 16 2 C -0.05 -0.72 6.52 29.85 0.19 -0.52 16 3 C 0.04 1.00 6.64 88.52 0.59 1.58 16 4 N -0.50 -14.73 10.54 -191.45 -2.02 -16.75 16 5 C 0.04 1.20 11.25 83.66 0.94 2.14 16 6 C -0.22 -6.33 6.14 24.64 0.15 -6.18 16 7 C 0.14 4.50 5.99 85.56 0.51 5.01 16 8 N -0.68 -23.77 5.68 -499.45 -2.84 -26.60 16 9 C 0.14 5.82 2.23 44.17 0.10 5.92 16 10 H 0.04 1.63 7.69 -2.39 -0.02 1.61 16 11 C 0.06 3.00 4.68 29.85 0.14 3.14 16 12 C -0.52 -29.06 8.53 25.60 0.22 -28.84 16 13 H 0.06 3.30 6.78 -2.91 -0.02 3.28 16 14 C 0.00 0.15 5.46 84.66 0.46 0.62 16 15 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 16 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 20 C -0.07 -2.69 4.25 -19.87 -0.08 -2.78 16 21 C -0.12 -4.27 8.99 22.27 0.20 -4.07 16 22 C -0.13 -3.83 10.05 22.27 0.22 -3.61 16 23 C -0.13 -3.56 10.05 22.27 0.22 -3.33 16 24 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 25 C -0.12 -4.33 8.83 22.27 0.20 -4.13 16 26 S 0.15 3.35 23.18 -56.49 -1.31 2.04 16 27 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.17 5.33 8.06 -2.91 -0.02 5.30 16 33 H 0.08 2.81 7.33 -2.39 -0.02 2.80 16 34 H 0.05 1.48 8.12 -2.39 -0.02 1.47 16 35 H 0.34 10.71 8.01 -89.70 -0.72 9.99 16 36 H -0.01 -0.64 7.33 -2.39 -0.02 -0.66 16 37 H -0.01 -0.51 8.13 -2.39 -0.02 -0.53 16 38 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 39 H 0.12 4.22 7.73 -2.91 -0.02 4.20 16 40 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 41 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 42 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 43 H 0.12 3.97 7.85 -2.91 -0.02 3.94 16 Total: -1.00 -68.31 373.29 1.43 -66.88 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.28 Total: 24.60 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 5.00 Total: -39.71 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -4.57 Total: -100.48 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.31 Total: 2.04 kcal Total: -68.31 1.43 -66.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344830937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.501 kcal (2) G-P(sol) polarization free energy of solvation -68.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds