Wall clock time and date at job start Tue Mar 31 2020 10:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38298 * 119.93199 * 2 1 4 4 C 1.38103 * 120.06105 * 179.97438 * 3 2 1 5 5 C 1.38847 * 119.93815 * 0.02562 * 4 3 2 6 6 N 1.40195 * 120.06761 * 180.02562 * 5 4 3 7 7 C 1.37863 * 126.53610 * 129.68355 * 6 5 4 8 8 C 1.34398 * 106.94610 * 179.83841 * 7 6 5 9 9 N 1.34379 * 108.40688 * 0.42780 * 8 7 6 10 10 C 1.31284 * 109.35751 * 359.72850 * 9 8 7 11 11 S 1.76199 * 125.82151 * 180.02562 * 10 9 8 12 12 C 1.81008 * 99.99855 * 359.95597 * 11 10 9 13 13 H 1.08994 * 109.46958 * 305.00332 * 12 11 10 14 14 C 1.53002 * 109.46926 * 65.00098 * 12 11 10 15 15 C 1.52995 * 109.46957 * 184.99859 * 12 11 10 16 16 C 1.50705 * 109.46892 * 65.00385 * 15 12 11 17 17 H 1.07995 * 119.99830 * 359.97438 * 16 15 12 18 18 C 1.37876 * 119.99728 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99945 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00196 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.46590 * 90.00817 * 20 18 16 22 22 H 1.48499 * 109.47172 * 210.00399 * 20 18 16 23 23 H 1.48494 * 109.47120 * 330.00585 * 20 18 16 24 24 C 1.38807 * 119.86625 * 359.72514 * 5 4 3 25 25 C 1.38143 * 119.93354 * 0.52292 * 24 5 4 26 26 C 1.50703 * 119.96803 * 179.75158 * 25 24 5 27 27 H 1.08999 * 109.47785 * 270.02740 * 1 2 3 28 28 H 1.08997 * 109.47037 * 30.02952 * 1 2 3 29 29 H 1.09007 * 109.47242 * 150.02215 * 1 2 3 30 30 H 1.07999 * 119.97027 * 359.96861 * 3 2 1 31 31 H 1.08001 * 120.03198 * 179.97438 * 4 3 2 32 32 H 1.07998 * 126.52624 * 359.96833 * 7 6 5 33 33 H 1.07995 * 125.79800 * 180.11883 * 8 7 6 34 34 H 1.09002 * 109.46943 * 299.99777 * 14 12 11 35 35 H 1.09000 * 109.47052 * 59.99607 * 14 12 11 36 36 H 1.08998 * 109.46748 * 179.97438 * 14 12 11 37 37 H 1.08997 * 109.47290 * 185.00070 * 15 12 11 38 38 H 1.09003 * 109.47475 * 305.00418 * 15 12 11 39 39 H 0.96992 * 120.00285 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.03619 * 180.29868 * 24 5 4 41 41 H 1.09002 * 109.47152 * 269.72807 * 26 25 24 42 42 H 1.09001 * 109.46980 * 149.72907 * 26 25 24 43 43 H 1.09004 * 109.47113 * 29.72888 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1985 0.0000 4 6 3.5781 1.2016 0.0005 5 6 4.2737 0.0000 0.0005 6 7 5.6757 0.0000 0.0016 7 6 6.4957 -0.7077 0.8544 8 6 7.7622 -0.4226 0.5064 9 7 7.7353 0.4413 -0.5225 10 6 6.4882 0.7047 -0.8370 11 16 5.9551 1.7840 -2.1237 12 6 7.5590 2.3247 -2.7651 13 1 8.1533 2.7423 -1.9524 14 6 8.2948 1.1286 -3.3724 15 6 7.3448 3.3914 -3.8408 16 6 6.7311 4.6181 -3.2164 17 1 6.5151 4.6349 -2.1584 18 6 6.4445 5.7184 -3.9963 19 7 5.9094 6.7892 -3.4514 20 14 6.8174 5.6890 -5.8264 21 1 5.6377 5.1695 -6.5636 22 1 7.1247 7.0654 -6.2912 23 1 7.9862 4.8086 -6.0793 24 6 3.5783 -1.2013 0.0058 25 6 2.1969 -1.1981 0.0000 26 6 1.4411 -2.5020 0.0001 27 1 -0.3635 0.0005 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6555 2.1329 -0.0005 31 1 4.1165 2.1379 0.0001 32 1 6.1805 -1.3674 1.6493 33 1 8.6506 -0.8167 0.9772 34 1 8.4474 0.3686 -2.6061 35 1 7.7005 0.7109 -4.1851 36 1 9.2605 1.4542 -3.7591 37 1 8.3032 3.6528 -4.2892 38 1 6.6776 3.0028 -4.6101 39 1 5.7080 7.5634 -3.9998 40 1 4.1166 -2.1375 0.0107 41 1 1.2589 -2.8163 -1.0276 42 1 0.4889 -2.3699 0.5138 43 1 2.0289 -3.2626 0.5140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347590396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:01 Heat of formation + Delta-G solvation = 74.080961 kcal Electronic energy + Delta-G solvation = -23434.211903 eV Core-core repulsion = 20185.143013 eV Total energy + Delta-G solvation = -3249.068890 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.86781 -39.57428 -35.02437 -34.48671 -32.62274 -32.09100 -31.19177 -29.49232 -27.89354 -27.65259 -26.19899 -23.06727 -22.68616 -22.38364 -21.09552 -20.88271 -19.80604 -18.10640 -16.73002 -16.26194 -15.79517 -15.47882 -14.94762 -14.71369 -14.42749 -14.37769 -14.13598 -13.95969 -13.34893 -13.29371 -13.07665 -12.95519 -12.72175 -12.49981 -12.30108 -12.17824 -12.07278 -11.70419 -11.53612 -11.41516 -11.21065 -10.96861 -10.54364 -10.07615 -10.01060 -9.81803 -9.54771 -9.47073 -9.31292 -9.03100 -8.92142 -8.54806 -8.43088 -6.84976 -6.04538 -4.03184 0.88888 1.17777 1.81803 2.15426 2.85579 3.08019 3.23987 3.30392 3.38099 3.40819 3.48369 4.44011 4.54001 4.62351 4.75164 4.87752 5.00213 5.02101 5.26346 5.29392 5.32175 5.35375 5.39376 5.46728 5.58304 5.59798 5.68141 5.70322 5.81313 5.84212 5.90394 6.05525 6.11288 6.18096 6.41262 6.43082 6.51046 6.53146 6.66839 6.70950 6.90547 7.06696 7.19989 7.27158 7.70534 8.09226 8.50625 9.01987 9.56346 11.08140 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.004108 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.349864 B = 6814.242776 C = 8287.273767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.096 4.096 4 C -0.104 4.104 5 C 0.120 3.880 6 N -0.408 5.408 7 C -0.061 4.061 8 C -0.015 4.015 9 N -0.488 5.488 10 C 0.209 3.791 11 S 0.008 5.992 12 C -0.047 4.047 13 H 0.095 0.905 14 C -0.149 4.149 15 C 0.000 4.000 16 C -0.522 4.522 17 H 0.081 0.919 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.873 3.127 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 C -0.112 4.112 25 C -0.078 4.078 26 C -0.114 4.114 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.172 0.828 33 H 0.171 0.829 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.038 0.962 38 H 0.020 0.980 39 H 0.263 0.737 40 H 0.127 0.873 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.368 -18.699 8.438 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.114 4.114 4 C -0.124 4.124 5 C 0.029 3.971 6 N -0.091 5.091 7 C -0.193 4.193 8 C -0.164 4.164 9 N -0.210 5.210 10 C -0.160 4.160 11 S 0.240 5.760 12 C -0.176 4.176 13 H 0.113 0.887 14 C -0.208 4.208 15 C -0.039 4.039 16 C -0.560 4.560 17 H 0.099 0.901 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.700 3.300 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.132 4.132 25 C -0.078 4.078 26 C -0.170 4.170 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.158 0.842 32 H 0.190 0.810 33 H 0.188 0.812 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.145 0.855 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.916 -17.885 7.649 21.398 hybrid contribution 0.924 -0.510 -0.028 1.056 sum -7.992 -18.396 7.620 21.456 Atomic orbital electron populations 1.20840 0.90858 1.03176 1.02385 1.19881 0.96333 0.92448 0.99794 1.20969 0.93104 0.98081 0.99288 1.21256 0.94707 0.97462 0.98990 1.17658 0.80321 0.94603 1.04499 1.43015 1.03966 1.35831 1.26269 1.22722 0.90783 1.05095 1.00737 1.22298 0.96114 1.00352 0.97636 1.70867 1.16880 1.17396 1.15841 1.26201 0.87758 1.01697 1.00318 1.86094 1.13769 1.45528 1.30635 1.23325 0.93114 0.98700 1.02452 0.88700 1.22160 0.99889 0.97792 1.00994 1.19570 0.97882 0.93233 0.93239 1.21151 1.40624 0.96694 0.97513 0.90072 1.24968 0.94499 0.95317 0.98221 1.69903 1.43257 1.04497 1.36006 0.86878 0.79431 0.77405 0.86263 1.20206 1.21286 1.18933 1.20839 0.93764 0.96469 1.02111 1.19563 0.92580 0.95301 1.00385 1.20813 0.99974 0.93639 1.02583 0.91034 0.91123 0.91221 0.84751 0.84241 0.81046 0.81212 0.91092 0.92938 0.92303 0.94429 0.96200 0.92708 0.85549 0.90903 0.91043 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.19 36.00 0.33 -0.54 16 2 C -0.08 -0.89 5.88 -104.59 -0.62 -1.50 16 3 C -0.10 -1.17 9.69 -39.61 -0.38 -1.55 16 4 C -0.10 -1.53 8.86 -39.41 -0.35 -1.88 16 5 C 0.12 1.76 5.86 -83.60 -0.49 1.27 16 6 N -0.41 -6.58 2.91 -60.74 -0.18 -6.76 16 7 C -0.06 -0.84 11.32 -16.19 -0.18 -1.03 16 8 C -0.02 -0.23 11.84 -17.79 -0.21 -0.44 16 9 N -0.49 -9.04 8.71 -13.38 -0.12 -9.16 16 10 C 0.21 3.91 7.51 -88.48 -0.66 3.24 16 11 S 0.01 0.15 19.37 -107.50 -2.08 -1.93 16 12 C -0.05 -0.99 2.27 -26.73 -0.06 -1.05 16 13 H 0.09 2.13 8.14 -51.92 -0.42 1.71 16 14 C -0.15 -2.72 9.01 37.16 0.33 -2.38 16 15 C 0.00 -0.01 3.51 -27.88 -0.10 -0.10 16 16 C -0.52 -14.60 9.09 -34.44 -0.31 -14.92 16 17 H 0.08 2.46 7.84 -52.49 -0.41 2.05 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 20 Si 0.87 21.45 27.47 -169.99 -4.67 16.79 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 24 C -0.11 -1.36 9.35 -39.41 -0.37 -1.72 16 25 C -0.08 -0.81 5.88 -104.65 -0.62 -1.42 16 26 C -0.11 -0.82 9.19 36.01 0.33 -0.49 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.07 0.45 6.69 -51.93 -0.35 0.10 16 30 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.14 2.28 7.55 -52.49 -0.40 1.88 16 32 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.07 1.29 5.88 -51.93 -0.31 0.99 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.89 7.20 -51.93 -0.37 0.52 16 38 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.42 6.69 -51.93 -0.35 0.07 16 43 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -32.26 363.94 -10.63 -42.88 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.39 Total: 1.86 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -3.45 Total: -22.56 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.48 Total: -42.52 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.08 Total: -1.93 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.26 -10.63 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347590396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.965 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds