Wall clock time and date at job start Tue Mar 31 2020 10:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38297 * 119.93896 * 2 1 4 4 C 1.38099 * 120.07051 * 179.97438 * 3 2 1 5 5 C 1.38853 * 119.93292 * 359.79693 * 4 3 2 6 6 N 1.40192 * 120.06648 * 180.25340 * 5 4 3 7 7 C 1.37861 * 126.53621 * 130.22869 * 6 5 4 8 8 C 1.34388 * 106.94788 * 179.97438 * 7 6 5 9 9 N 1.34373 * 108.40914 * 0.02562 * 8 7 6 10 10 C 1.31274 * 109.35771 * 359.72012 * 9 8 7 11 11 S 1.76202 * 125.82482 * 180.30597 * 10 9 8 12 12 C 1.80999 * 99.99800 * 0.16063 * 11 10 9 13 13 H 1.08999 * 109.47001 * 55.00424 * 12 11 10 14 14 C 1.52996 * 109.47219 * 294.99833 * 12 11 10 15 15 C 1.52999 * 109.46897 * 174.99963 * 12 11 10 16 16 C 1.50705 * 109.47300 * 294.99939 * 15 12 11 17 17 H 1.08001 * 119.99652 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00029 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00458 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99972 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47155 * 59.99975 * 20 18 16 22 22 H 1.48497 * 109.47293 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46931 * 300.00285 * 20 18 16 24 24 C 1.38806 * 119.86648 * 0.45722 * 5 4 3 25 25 C 1.38141 * 119.93438 * 359.51624 * 24 5 4 26 26 C 1.50703 * 119.96998 * 180.27615 * 25 24 5 27 27 H 1.09001 * 109.47202 * 270.02141 * 1 2 3 28 28 H 1.09002 * 109.47042 * 30.02112 * 1 2 3 29 29 H 1.08997 * 109.47160 * 150.02140 * 1 2 3 30 30 H 1.08007 * 119.96211 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.03263 * 180.02562 * 4 3 2 32 32 H 1.08002 * 126.52343 * 359.96363 * 7 6 5 33 33 H 1.08009 * 125.79918 * 180.02562 * 8 7 6 34 34 H 1.08997 * 109.47274 * 299.99813 * 14 12 11 35 35 H 1.09003 * 109.47132 * 60.00105 * 14 12 11 36 36 H 1.09004 * 109.46936 * 179.97438 * 14 12 11 37 37 H 1.08997 * 109.47071 * 54.99732 * 15 12 11 38 38 H 1.09002 * 109.47154 * 175.00308 * 15 12 11 39 39 H 0.97000 * 120.00216 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.03497 * 179.79991 * 24 5 4 41 41 H 1.08994 * 109.47514 * 90.00091 * 26 25 24 42 42 H 1.08999 * 109.47117 * 210.00754 * 26 25 24 43 43 H 1.09010 * 109.46827 * 330.00068 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5781 1.2016 0.0005 5 6 4.2738 -0.0001 0.0053 6 7 5.6757 -0.0002 0.0113 7 6 6.4928 -0.7142 0.8615 8 6 7.7604 -0.4243 0.5221 9 7 7.7371 0.4420 -0.5049 10 6 6.4912 0.7019 -0.8267 11 16 5.9626 1.7771 -2.1188 12 6 7.5687 2.3148 -2.7570 13 1 8.1651 1.4418 -3.0219 14 6 8.2988 3.1247 -1.6838 15 6 7.3590 3.1848 -3.9979 16 6 6.7511 2.3530 -5.0978 17 1 6.5355 1.3083 -4.9285 18 6 6.4693 2.9258 -6.3198 19 7 6.7313 4.1980 -6.5259 20 14 5.7151 1.8949 -7.6829 21 1 4.4081 1.3549 -7.2298 22 1 5.5117 2.7393 -8.8874 23 1 6.6267 0.7707 -8.0153 24 6 3.5783 -1.2014 0.0000 25 6 2.1969 -1.1982 0.0000 26 6 1.4411 -2.5019 0.0005 27 1 -0.3634 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6555 2.1329 -0.0004 31 1 4.1165 2.1379 0.0010 32 1 6.1748 -1.3798 1.6504 33 1 8.6473 -0.8202 0.9945 34 1 7.7023 3.9977 -1.4189 35 1 8.4482 2.5049 -0.7996 36 1 9.2662 3.4482 -2.0680 37 1 6.6897 4.0099 -3.7543 38 1 8.3185 3.5812 -4.3302 39 1 6.5333 4.6009 -7.3858 40 1 4.1167 -2.1377 0.0004 41 1 1.2588 -2.8159 1.0282 42 1 0.4889 -2.3701 -0.5135 43 1 2.0289 -3.2629 -0.5131 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347590415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:04 Heat of formation + Delta-G solvation = 71.585073 kcal Electronic energy + Delta-G solvation = -23425.583407 eV Core-core repulsion = 20176.406287 eV Total energy + Delta-G solvation = -3249.177120 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.86230 -39.59068 -34.99175 -34.39103 -32.64539 -32.03256 -31.19156 -29.43912 -27.69398 -27.32490 -26.22910 -23.24235 -22.71321 -22.38701 -21.13589 -20.89049 -19.79753 -18.12458 -16.33440 -16.25121 -15.80701 -15.53284 -14.79233 -14.67415 -14.50568 -14.48944 -14.17903 -13.95833 -13.37136 -13.30637 -13.05096 -12.88482 -12.85877 -12.44176 -12.21120 -12.06345 -11.74332 -11.50921 -11.50307 -11.25635 -11.10344 -10.74753 -10.56475 -10.51428 -9.99760 -9.82175 -9.46635 -9.40735 -9.18083 -8.99475 -8.94455 -8.43925 -8.35764 -6.82453 -6.01345 -4.03191 0.87956 1.15450 1.85716 2.16293 2.89320 3.13627 3.25510 3.35827 3.39097 3.43206 3.46886 4.47076 4.52864 4.60879 4.73628 4.83485 4.93418 5.03070 5.24845 5.27126 5.35787 5.36384 5.40864 5.48852 5.55993 5.57553 5.68165 5.78053 5.86058 5.90717 5.98947 6.03405 6.15213 6.25219 6.40035 6.41539 6.64443 6.66484 6.71001 6.77806 6.97374 7.27353 7.54995 7.60982 7.96054 8.11066 8.33528 9.01643 9.60862 11.09740 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011034 B = 0.004374 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.108791 B = 6399.448979 C = 7960.883806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.085 4.085 3 C -0.097 4.097 4 C -0.106 4.106 5 C 0.123 3.877 6 N -0.409 5.409 7 C -0.063 4.063 8 C -0.015 4.015 9 N -0.487 5.487 10 C 0.210 3.790 11 S 0.000 6.000 12 C -0.052 4.052 13 H 0.088 0.912 14 C -0.146 4.146 15 C 0.037 3.963 16 C -0.521 4.521 17 H 0.062 0.938 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.111 4.111 25 C -0.076 4.076 26 C -0.116 4.116 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.172 0.828 33 H 0.170 0.830 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.026 0.974 38 H 0.039 0.961 39 H 0.262 0.738 40 H 0.127 0.873 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.221 -10.094 17.380 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.085 4.085 3 C -0.116 4.116 4 C -0.126 4.126 5 C 0.032 3.968 6 N -0.092 5.092 7 C -0.195 4.195 8 C -0.164 4.164 9 N -0.209 5.209 10 C -0.159 4.159 11 S 0.232 5.768 12 C -0.182 4.182 13 H 0.107 0.893 14 C -0.205 4.205 15 C -0.002 4.002 16 C -0.560 4.560 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.534 5.534 20 Si 0.718 3.282 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.130 4.130 25 C -0.076 4.076 26 C -0.172 4.172 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.189 0.811 33 H 0.188 0.812 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.145 0.855 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.711 -9.326 16.488 21.761 hybrid contribution 0.395 -1.274 0.023 1.334 sum -10.316 -10.600 16.511 22.168 Atomic orbital electron populations 1.20873 0.90873 1.03243 1.02374 1.19859 0.96335 0.92462 0.99839 1.20918 0.93047 0.98004 0.99597 1.21149 0.94607 0.97220 0.99638 1.17649 0.80379 0.94609 1.04163 1.43034 1.03924 1.35882 1.26404 1.22707 0.90853 1.04896 1.01028 1.22303 0.96068 1.00220 0.97786 1.70879 1.17010 1.17466 1.15574 1.26269 0.87658 1.02154 0.99778 1.86070 1.14750 1.48865 1.27097 1.23565 0.92365 1.02710 0.99518 0.89322 1.22119 0.99988 0.99697 0.98733 1.19087 0.98321 0.94193 0.88551 1.21235 1.41044 0.96737 0.96936 0.91972 1.24966 0.95659 0.94883 0.98532 1.69944 1.48119 1.11211 1.24105 0.86668 0.79968 0.80234 0.81295 1.20097 1.21301 1.20169 1.20872 0.93783 0.96598 1.01790 1.19568 0.92591 0.95354 1.00123 1.20856 1.00230 0.93720 1.02415 0.91044 0.91228 0.91000 0.84908 0.84632 0.81086 0.81238 0.92931 0.91455 0.92318 0.95614 0.94310 0.92873 0.85477 0.91010 0.90777 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.60 36.00 0.35 -0.52 16 2 C -0.08 -0.88 5.88 -104.59 -0.62 -1.49 16 3 C -0.10 -1.11 9.69 -39.61 -0.38 -1.50 16 4 C -0.11 -1.47 8.87 -39.40 -0.35 -1.82 16 5 C 0.12 1.79 5.86 -83.60 -0.49 1.30 16 6 N -0.41 -6.61 2.91 -60.74 -0.18 -6.79 16 7 C -0.06 -0.87 11.32 -16.20 -0.18 -1.05 16 8 C -0.02 -0.23 11.84 -17.80 -0.21 -0.44 16 9 N -0.49 -9.14 8.70 -13.38 -0.12 -9.25 16 10 C 0.21 3.96 7.51 -88.48 -0.66 3.29 16 11 S 0.00 0.00 19.38 -107.50 -2.08 -2.08 16 12 C -0.05 -1.15 2.27 -26.73 -0.06 -1.21 16 13 H 0.09 2.04 8.14 -51.92 -0.42 1.62 16 14 C -0.15 -2.79 9.01 37.16 0.33 -2.46 16 15 C 0.04 0.95 4.44 -27.88 -0.12 0.83 16 16 C -0.52 -14.61 8.53 -34.44 -0.29 -14.90 16 17 H 0.06 1.74 7.60 -52.49 -0.40 1.34 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 20 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.11 -1.37 9.35 -39.41 -0.37 -1.74 16 25 C -0.08 -0.80 5.88 -104.65 -0.62 -1.42 16 26 C -0.12 -0.88 9.60 36.01 0.35 -0.53 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.07 0.46 5.94 -51.93 -0.31 0.15 16 30 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.14 1.96 7.56 -52.48 -0.40 1.56 16 32 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.17 1.99 8.06 -52.48 -0.42 1.57 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.27 5.88 -51.93 -0.31 0.96 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.48 5.94 -51.93 -0.31 0.17 16 43 H 0.07 0.49 8.09 -51.92 -0.42 0.07 16 LS Contribution 366.87 15.07 5.53 5.53 Total: -1.00 -32.03 366.87 -10.91 -42.93 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.34 Total: 0.67 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -3.43 Total: -22.01 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.44 Total: -41.89 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.08 Total: -2.08 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.03 -10.91 -42.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347590415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.518 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds