Wall clock time and date at job start Tue Mar 31 2020 11:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46954 * 2 1 4 4 H 1.08993 * 109.47278 * 55.67286 * 3 2 1 5 5 N 1.46898 * 109.46656 * 175.67538 * 3 2 1 6 6 C 1.46909 * 110.99779 * 273.22409 * 5 3 2 7 7 C 1.50697 * 109.47160 * 176.73519 * 6 5 3 8 8 C 1.38637 * 119.74681 * 269.72590 * 7 6 5 9 9 C 1.37616 * 120.24522 * 179.71977 * 8 7 6 10 10 C 1.40713 * 119.74858 * 0.57405 * 9 8 7 11 11 C 1.41395 * 120.24943 * 179.67851 * 10 9 8 12 12 H 1.07994 * 119.99668 * 26.33030 * 11 10 9 13 13 C 1.39943 * 120.00257 * 206.33066 * 11 10 9 14 14 N 1.30828 * 119.99862 * 16.09117 * 13 11 10 15 15 Si 1.86798 * 120.00155 * 196.08433 * 13 11 10 16 16 H 1.48500 * 109.46925 * 90.00161 * 15 13 11 17 17 H 1.48498 * 109.47316 * 210.00303 * 15 13 11 18 18 H 1.48499 * 109.46961 * 330.00101 * 15 13 11 19 19 C 1.40720 * 119.50741 * 359.70244 * 10 9 8 20 20 C 1.37618 * 119.74576 * 0.02562 * 19 10 9 21 21 C 1.50709 * 109.46990 * 295.66852 * 3 2 1 22 22 N 1.29021 * 124.91133 * 104.72128 * 21 3 2 23 23 C 1.31785 * 117.12106 * 179.81069 * 22 21 3 24 24 C 1.50701 * 122.74684 * 180.22617 * 23 22 21 25 25 C 1.33638 * 114.50004 * 0.47825 * 23 22 21 26 26 S 1.70976 * 124.91575 * 285.02462 * 21 3 2 27 27 H 1.09001 * 109.46922 * 176.78756 * 1 2 3 28 28 H 1.09001 * 109.47367 * 56.77979 * 1 2 3 29 29 H 1.09005 * 109.46960 * 296.78066 * 1 2 3 30 30 H 1.08997 * 109.47153 * 119.99930 * 2 1 3 31 31 H 1.09000 * 109.46840 * 240.00400 * 2 1 3 32 32 H 1.00891 * 111.00945 * 37.17866 * 5 3 2 33 33 H 1.08999 * 109.46790 * 296.73384 * 6 5 3 34 34 H 1.09000 * 109.46457 * 56.73315 * 6 5 3 35 35 H 1.07996 * 119.87721 * 359.97438 * 8 7 6 36 36 H 1.08003 * 120.12909 * 180.27935 * 9 8 7 37 37 H 0.97000 * 119.99770 * 180.02562 * 14 13 11 38 38 H 1.08004 * 120.12301 * 179.97438 * 19 10 9 39 39 H 1.07996 * 119.87224 * 180.02562 * 20 19 10 40 40 H 1.09004 * 109.47277 * 270.24392 * 24 23 22 41 41 H 1.08998 * 109.47483 * 30.24960 * 24 23 22 42 42 H 1.09002 * 109.46828 * 150.24957 * 24 23 22 43 43 H 1.07992 * 126.03652 * 179.78913 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6148 1.9783 0.8486 5 7 3.5052 1.4438 0.1044 6 6 3.9329 1.4015 1.5093 7 6 5.4364 1.3232 1.5745 8 6 6.0606 0.0854 1.5928 9 6 7.4331 0.0019 1.6464 10 6 8.2029 1.1788 1.6950 11 6 9.6135 1.1052 1.7572 12 1 10.1276 0.2451 1.3546 13 6 10.3435 2.1470 2.3406 14 7 9.7387 3.0247 3.0991 15 14 12.1814 2.2842 2.0364 16 1 12.4229 3.1210 0.8336 17 1 12.8328 2.9111 3.2145 18 1 12.7496 0.9295 1.8192 19 6 7.5582 2.4296 1.6818 20 6 6.1846 2.4892 1.6222 21 6 1.6271 2.1213 -1.2807 22 7 0.6764 2.9873 -1.3841 23 6 0.4476 3.4882 -2.5814 24 6 -0.6274 4.5108 -2.8455 25 6 1.2434 3.0109 -3.5431 26 16 2.3460 1.8497 -2.8080 27 1 -0.3633 -1.0261 -0.0576 28 1 -0.3634 0.5630 -0.8597 29 1 -0.3633 0.4631 0.9175 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.9058 0.6796 -0.4185 33 1 3.5936 2.3029 2.0196 34 1 3.5020 0.5255 1.9939 35 1 5.4676 -0.8167 1.5606 36 1 7.9176 -0.9634 1.6560 37 1 10.2446 3.7470 3.5031 38 1 8.1393 3.3392 1.7192 39 1 5.6878 3.4481 1.6115 40 1 -1.5596 4.0026 -3.0922 41 1 -0.7721 5.1239 -1.9560 42 1 -0.3280 5.1456 -3.6795 43 1 1.2160 3.2885 -4.5864 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347617855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:05 Heat of formation + Delta-G solvation = 46.515809 kcal Electronic energy + Delta-G solvation = -22877.179486 eV Core-core repulsion = 19626.915281 eV Total energy + Delta-G solvation = -3250.264205 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.94727 -38.03402 -36.87888 -34.03221 -32.63740 -31.67797 -30.04001 -29.26006 -27.82404 -27.23051 -25.34728 -23.57223 -22.95237 -21.15241 -20.89820 -20.05496 -19.47950 -17.62035 -17.29305 -16.15744 -15.44662 -15.28638 -14.86178 -14.63495 -14.31169 -14.09742 -13.75303 -13.57494 -13.28745 -13.21802 -12.66992 -12.56133 -12.46662 -12.40477 -12.08346 -11.94593 -11.66586 -11.51619 -11.44641 -11.26156 -11.11613 -11.02018 -10.92323 -10.45912 -10.40878 -9.64561 -9.57698 -9.37846 -9.33269 -9.16871 -8.66104 -8.22256 -7.44942 -7.31058 -6.75337 -4.36307 0.75627 1.44527 1.86034 2.69976 2.80173 3.06436 3.07817 3.10606 3.16771 3.86363 3.93344 4.50304 4.73983 4.77162 4.80725 5.00535 5.09090 5.18728 5.29387 5.41810 5.47963 5.56854 5.61323 5.70306 5.77020 5.79868 5.83294 5.86793 5.96513 6.10916 6.19513 6.23374 6.33653 6.44934 6.95313 7.07546 7.19466 7.28967 7.34173 7.55242 7.62206 7.79071 7.86037 8.05732 8.13003 8.29938 8.64637 8.89390 8.97217 10.19548 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.002674 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.205705 B =10468.236317 C =11099.520735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.148 4.148 3 C 0.155 3.845 4 H 0.105 0.895 5 N -0.678 5.678 6 C 0.128 3.872 7 C -0.215 4.215 8 C -0.084 4.084 9 C -0.226 4.226 10 C 0.114 3.886 11 C -0.464 4.464 12 H 0.077 0.923 13 C 0.075 3.925 14 N -0.794 5.794 15 Si 0.908 3.092 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.165 4.165 20 C -0.078 4.078 21 C 0.085 3.915 22 N -0.479 5.479 23 C 0.066 3.934 24 C -0.076 4.076 25 C -0.282 4.282 26 S 0.142 5.858 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.344 0.656 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.280 0.720 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.271 -1.225 -9.369 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 C 0.041 3.959 4 H 0.123 0.877 5 N -0.309 5.309 6 C 0.001 3.999 7 C -0.217 4.217 8 C -0.103 4.103 9 C -0.246 4.246 10 C 0.111 3.889 11 C -0.493 4.493 12 H 0.095 0.905 13 C -0.142 4.142 14 N -0.420 5.420 15 Si 0.733 3.267 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.184 4.184 20 C -0.097 4.097 21 C -0.193 4.193 22 N -0.195 5.195 23 C -0.067 4.067 24 C -0.136 4.136 25 C -0.421 4.421 26 S 0.398 5.602 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.163 0.837 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.617 -0.829 -9.137 18.113 hybrid contribution 0.093 -0.089 -0.067 0.145 sum -15.524 -0.918 -9.205 18.071 Atomic orbital electron populations 1.21694 0.94953 1.01412 1.02356 1.22284 0.97354 0.96227 1.03005 1.20124 0.90056 0.93820 0.91869 0.87727 1.60664 1.04223 1.51730 1.14283 1.20598 0.93790 0.99286 0.86227 1.18847 0.92105 0.93517 1.17242 1.20352 0.94488 0.94890 1.00585 1.20941 0.92941 0.97144 1.13553 1.17638 0.93167 0.90933 0.87127 1.19601 0.91637 1.03971 1.34124 0.90497 1.25904 1.01088 0.94496 0.92735 1.69821 1.38475 1.12057 1.21625 0.86314 0.82072 0.79566 0.78767 1.19281 1.20338 1.18661 1.21306 0.92761 0.98330 1.06021 1.20508 0.94207 0.95596 0.99340 1.27009 0.94922 0.97886 0.99515 1.66096 1.17911 1.10749 1.24704 1.20241 0.99353 0.99936 0.87135 1.20320 0.95011 0.95684 1.02561 1.26797 1.03420 1.07035 1.04860 1.84054 1.34708 1.39175 1.02265 0.92734 0.92690 0.92360 0.90443 0.91514 0.83722 0.91592 0.95688 0.89861 0.89127 0.90895 0.86612 0.89451 0.90957 0.90701 0.90958 0.81102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.77 37.16 0.36 -1.11 16 2 C -0.15 -1.61 5.38 -26.73 -0.14 -1.75 16 3 C 0.16 2.02 2.59 -68.86 -0.18 1.85 16 4 H 0.10 1.43 7.81 -51.93 -0.41 1.02 16 5 N -0.68 -10.25 6.06 -109.21 -0.66 -10.91 16 6 C 0.13 2.14 5.59 -4.97 -0.03 2.11 16 7 C -0.22 -4.49 5.38 -104.33 -0.56 -5.05 16 8 C -0.08 -1.80 9.67 -39.66 -0.38 -2.19 16 9 C -0.23 -5.45 9.80 -38.87 -0.38 -5.83 16 10 C 0.11 3.01 5.56 -106.82 -0.59 2.42 16 11 C -0.46 -12.26 9.05 -37.74 -0.34 -12.61 16 12 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 13 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 14 N -0.79 -20.58 10.98 55.55 0.61 -19.97 16 15 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 16 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 19 C -0.16 -4.26 8.68 -38.87 -0.34 -4.60 16 20 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 21 C 0.09 1.16 5.24 -13.45 -0.07 1.09 16 22 N -0.48 -6.76 10.44 -8.05 -0.08 -6.85 16 23 C 0.07 0.81 6.74 -84.22 -0.57 0.24 16 24 C -0.08 -0.67 10.31 36.01 0.37 -0.30 16 25 C -0.28 -3.16 11.13 29.12 0.32 -2.84 16 26 S 0.14 1.74 22.97 -107.50 -2.47 -0.73 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.61 7.18 -51.93 -0.37 0.24 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.82 7.45 -51.93 -0.39 0.44 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.34 5.10 8.40 -39.30 -0.33 4.77 16 33 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 34 H 0.02 0.38 7.38 -51.93 -0.38 0.00 16 35 H 0.08 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.09 2.07 8.06 -52.48 -0.42 1.64 16 37 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 38 H 0.12 3.12 6.23 -52.48 -0.33 2.79 16 39 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 43 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -27.90 370.83 -11.45 -39.35 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.40 Total: 8.80 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -3.00 Total: -28.94 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -0.14 Total: -37.73 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.47 Total: -0.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.90 -11.45 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347617855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.866 kcal (2) G-P(sol) polarization free energy of solvation -27.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds