Wall clock time and date at job start Tue Mar 31 2020 10:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38294 * 119.97102 * 2 1 4 4 C 1.38257 * 120.13437 * 179.97438 * 3 2 1 5 5 C 1.38141 * 120.06160 * 0.02562 * 4 3 2 6 6 C 1.38803 * 119.93686 * 359.76837 * 5 4 3 7 7 N 1.40205 * 120.06755 * 180.25329 * 6 5 4 8 8 C 1.37860 * 126.53494 * 64.91452 * 7 6 5 9 9 C 1.34388 * 106.94547 * 179.84013 * 8 7 6 10 10 N 1.34383 * 108.40991 * 0.43031 * 9 8 7 11 11 C 1.31275 * 109.35366 * 359.72844 * 10 9 8 12 12 S 1.76201 * 125.81995 * 179.97438 * 11 10 9 13 13 C 1.80998 * 99.99745 * 0.03521 * 12 11 10 14 14 H 1.08998 * 109.47676 * 305.00213 * 13 12 11 15 15 C 1.52998 * 109.47235 * 65.00530 * 13 12 11 16 16 C 1.53008 * 109.46885 * 185.00328 * 13 12 11 17 17 C 1.50689 * 109.47297 * 64.99918 * 16 13 12 18 18 H 1.08003 * 120.00081 * 0.02562 * 17 16 13 19 19 C 1.37874 * 120.00401 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00426 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99698 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46713 * 90.00263 * 21 19 17 23 23 H 1.48493 * 109.47200 * 209.99976 * 21 19 17 24 24 H 1.48498 * 109.47129 * 330.00517 * 21 19 17 25 25 C 1.38105 * 119.96551 * 180.02562 * 2 1 3 26 26 C 1.50706 * 120.02983 * 359.97438 * 25 2 1 27 27 H 1.09005 * 109.47212 * 269.97873 * 1 2 3 28 28 H 1.09005 * 109.46963 * 29.97621 * 1 2 3 29 29 H 1.09003 * 109.47315 * 149.97766 * 1 2 3 30 30 H 1.08001 * 119.93381 * 0.02797 * 3 2 1 31 31 H 1.07997 * 119.96707 * 179.97438 * 4 3 2 32 32 H 1.08003 * 120.02824 * 180.02562 * 5 4 3 33 33 H 1.08001 * 126.52635 * 359.96937 * 8 7 6 34 34 H 1.08004 * 125.79796 * 180.15185 * 9 8 7 35 35 H 1.09003 * 109.47431 * 59.99588 * 15 13 12 36 36 H 1.08993 * 109.47497 * 179.97438 * 15 13 12 37 37 H 1.09002 * 109.47317 * 299.99718 * 15 13 12 38 38 H 1.08996 * 109.46892 * 185.00677 * 16 13 12 39 39 H 1.09000 * 109.46970 * 305.00107 * 16 13 12 40 40 H 0.97001 * 119.99805 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.47015 * 90.00201 * 26 25 2 42 42 H 1.09000 * 109.46646 * 209.99353 * 26 25 2 43 43 H 1.09000 * 109.47248 * 330.00071 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5804 1.2020 0.0005 5 6 4.2758 0.0083 0.0005 6 6 3.5852 -1.1957 0.0049 7 7 4.2882 -2.4087 0.0102 8 6 5.1053 -2.8793 1.0159 9 6 5.5724 -4.0737 0.6145 10 7 5.0724 -4.3370 -0.6047 11 6 4.2988 -3.3454 -0.9811 12 16 3.4240 -3.2419 -2.5071 13 6 3.9237 -4.8088 -3.2627 14 1 5.0117 -4.8670 -3.2930 15 6 3.3736 -5.9723 -2.4354 16 6 3.3689 -4.8882 -4.6864 17 6 4.0046 -3.8165 -5.5338 18 1 4.7319 -3.1459 -5.1003 19 6 3.6585 -3.6924 -6.8626 20 7 4.2137 -2.7573 -7.6022 21 14 2.4011 -4.8527 -7.6125 22 1 1.0418 -4.2741 -7.4613 23 1 2.7007 -5.0424 -9.0544 24 1 2.4611 -6.1637 -6.9177 25 6 2.1968 -1.1964 -0.0005 26 6 1.4432 -2.5015 -0.0005 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6563 2.1324 0.0005 31 1 4.1172 2.1391 0.0001 32 1 5.3558 0.0120 0.0014 33 1 5.3262 -2.3834 1.9496 34 1 6.2402 -4.7116 1.1746 35 1 2.2855 -5.9142 -2.4051 36 1 3.6741 -6.9159 -2.8906 37 1 3.7688 -5.9158 -1.4211 38 1 3.5936 -5.8672 -5.1098 39 1 2.2891 -4.7412 -4.6643 40 1 3.9699 -2.6699 -8.5370 41 1 1.2611 -2.8159 -1.0282 42 1 2.0325 -3.2613 0.5128 43 1 0.4909 -2.3713 0.5137 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347626671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:10 Heat of formation + Delta-G solvation = 77.986829 kcal Electronic energy + Delta-G solvation = -23993.192639 eV Core-core repulsion = 20744.293120 eV Total energy + Delta-G solvation = -3248.899519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.90865 -39.50676 -34.78661 -34.19801 -33.53866 -32.07929 -30.51490 -29.31858 -27.85782 -27.59857 -26.50935 -23.16304 -22.99874 -21.46242 -21.33414 -20.78418 -19.94078 -18.05233 -16.72229 -16.37262 -16.09813 -15.58568 -14.74687 -14.59947 -14.34895 -14.25553 -14.08755 -13.87219 -13.36914 -13.17052 -12.96044 -12.90714 -12.71840 -12.50183 -12.20869 -12.12547 -11.93566 -11.71058 -11.49703 -11.40653 -11.18697 -10.96297 -10.54204 -10.06561 -9.88553 -9.74807 -9.61123 -9.45338 -9.28152 -8.99714 -8.73871 -8.65284 -8.54246 -6.82640 -6.03515 -4.02277 0.95569 1.16519 1.82865 2.11868 2.86939 3.10763 3.26133 3.30155 3.37993 3.40366 3.45908 4.44205 4.59519 4.65967 4.79102 4.88583 5.00396 5.12655 5.30047 5.35118 5.38713 5.43593 5.49777 5.60066 5.65116 5.69371 5.70206 5.72388 5.83826 5.90351 6.10024 6.11176 6.15459 6.23604 6.32930 6.42481 6.50774 6.52416 6.65947 6.70178 6.91461 7.06443 7.19809 7.30135 7.71166 8.11696 8.51612 9.03588 9.57040 11.09223 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012787 B = 0.004578 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.174850 B = 6114.221052 C = 7074.515520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.107 4.107 4 C -0.113 4.113 5 C -0.106 4.106 6 C 0.116 3.884 7 N -0.407 5.407 8 C -0.060 4.060 9 C -0.017 4.017 10 N -0.489 5.489 11 C 0.212 3.788 12 S 0.010 5.990 13 C -0.048 4.048 14 H 0.094 0.906 15 C -0.149 4.149 16 C 0.000 4.000 17 C -0.521 4.521 18 H 0.081 0.919 19 C 0.071 3.929 20 N -0.898 5.898 21 Si 0.873 3.127 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.061 4.061 26 C -0.126 4.126 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 4.962 19.872 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.079 4.079 3 C -0.125 4.125 4 C -0.131 4.131 5 C -0.125 4.125 6 C 0.025 3.975 7 N -0.091 5.091 8 C -0.192 4.192 9 C -0.165 4.165 10 N -0.211 5.211 11 C -0.157 4.157 12 S 0.242 5.758 13 C -0.177 4.177 14 H 0.112 0.888 15 C -0.208 4.208 16 C -0.039 4.039 17 C -0.560 4.560 18 H 0.099 0.901 19 C -0.131 4.131 20 N -0.536 5.536 21 Si 0.700 3.300 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.062 4.062 26 C -0.183 4.183 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.188 0.812 34 H 0.187 0.813 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.877 5.256 18.791 20.378 hybrid contribution 0.389 -0.675 0.478 0.914 sum -5.488 4.580 19.269 20.553 Atomic orbital electron populations 1.20837 0.90558 1.03504 1.02326 1.19659 0.96384 0.91792 1.00046 1.21132 0.94202 0.97624 0.99556 1.20972 0.94217 0.97450 1.00487 1.21117 1.00309 0.91067 1.00011 1.17454 0.90306 0.83978 1.05754 1.42896 1.36606 1.14820 1.14739 1.22723 1.01658 0.99038 0.95799 1.22277 1.03926 0.96149 0.94186 1.70866 1.13024 1.24264 1.12995 1.26161 1.03815 0.88342 0.97352 1.86085 1.56473 1.30895 1.02355 1.23323 1.04235 0.91376 0.98802 0.88770 1.22154 1.00481 0.97333 1.00800 1.19561 0.96373 0.98826 0.89103 1.21153 1.25244 1.15128 0.94445 0.90106 1.24977 0.95923 0.95106 0.97050 1.69911 1.43233 1.32989 1.07505 0.86877 0.82216 0.82290 0.78578 1.20217 1.21287 1.18931 1.19788 0.91580 0.96218 0.98640 1.21025 0.99536 0.93432 1.04288 0.91099 0.91158 0.90772 0.85451 0.85181 0.85449 0.81160 0.81314 0.92957 0.92336 0.91061 0.94465 0.96238 0.92717 0.88809 0.91773 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.19 36.00 0.33 -0.67 16 2 C -0.08 -0.89 5.88 -104.65 -0.62 -1.51 16 3 C -0.11 -1.11 9.70 -39.55 -0.38 -1.49 16 4 C -0.11 -1.21 10.04 -39.61 -0.40 -1.61 16 5 C -0.11 -1.36 9.92 -39.41 -0.39 -1.75 16 6 C 0.12 1.68 5.47 -83.59 -0.46 1.23 16 7 N -0.41 -6.44 2.11 -60.74 -0.13 -6.57 16 8 C -0.06 -0.82 11.51 -16.20 -0.19 -1.00 16 9 C -0.02 -0.25 11.84 -17.79 -0.21 -0.46 16 10 N -0.49 -8.93 8.71 -13.38 -0.12 -9.05 16 11 C 0.21 3.89 6.59 -88.49 -0.58 3.30 16 12 S 0.01 0.19 18.61 -107.50 -2.00 -1.81 16 13 C -0.05 -1.01 2.27 -26.73 -0.06 -1.07 16 14 H 0.09 2.12 8.14 -51.92 -0.42 1.70 16 15 C -0.15 -2.64 9.01 37.16 0.33 -2.30 16 16 C 0.00 0.01 3.51 -27.88 -0.10 -0.09 16 17 C -0.52 -14.71 9.09 -34.45 -0.31 -15.02 16 18 H 0.08 2.49 7.84 -52.48 -0.41 2.08 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 21 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 25 C -0.06 -0.81 5.74 -104.44 -0.60 -1.41 16 26 C -0.13 -1.62 7.82 36.01 0.28 -1.34 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.07 0.66 6.70 -51.93 -0.35 0.31 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 33 H 0.17 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.17 1.95 8.06 -52.48 -0.42 1.53 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.26 5.89 -51.93 -0.31 0.96 16 38 H 0.04 0.88 7.20 -51.93 -0.37 0.51 16 39 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.09 1.32 6.80 -51.93 -0.35 0.97 16 42 H 0.06 0.90 7.14 -51.93 -0.37 0.53 16 43 H 0.07 0.73 6.70 -51.93 -0.35 0.38 16 LS Contribution 359.74 15.07 5.42 5.42 Total: -1.00 -32.46 359.74 -10.46 -42.93 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.30 Total: 2.35 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -3.45 Total: -23.23 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.53 Total: -42.45 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.00 Total: -1.81 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.46 -10.46 -42.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347626671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.912 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds