Wall clock time and date at job start Tue Mar 31 2020 10:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38294 * 119.97102 * 2 1 4 4 C 1.38257 * 120.13437 * 179.97438 * 3 2 1 5 5 C 1.38141 * 120.06160 * 0.02562 * 4 3 2 6 6 C 1.38803 * 119.93686 * 359.76837 * 5 4 3 7 7 N 1.40205 * 120.06755 * 180.25329 * 6 5 4 8 8 C 1.37860 * 126.53494 * 64.91452 * 7 6 5 9 9 C 1.34388 * 106.94547 * 179.84013 * 8 7 6 10 10 N 1.34383 * 108.40991 * 0.43031 * 9 8 7 11 11 C 1.31275 * 109.35366 * 359.72844 * 10 9 8 12 12 S 1.76201 * 125.81995 * 179.97438 * 11 10 9 13 13 C 1.80998 * 99.99745 * 0.03521 * 12 11 10 14 14 H 1.08998 * 109.47676 * 305.00213 * 13 12 11 15 15 C 1.52998 * 109.47235 * 65.00530 * 13 12 11 16 16 C 1.53008 * 109.46885 * 185.00328 * 13 12 11 17 17 C 1.50689 * 109.47297 * 64.99918 * 16 13 12 18 18 H 1.08003 * 120.00081 * 0.02562 * 17 16 13 19 19 C 1.37874 * 120.00401 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00426 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99698 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46713 * 90.00263 * 21 19 17 23 23 H 1.48493 * 109.47200 * 209.99976 * 21 19 17 24 24 H 1.48498 * 109.47129 * 330.00517 * 21 19 17 25 25 C 1.38105 * 119.96551 * 180.02562 * 2 1 3 26 26 C 1.50706 * 120.02983 * 359.97438 * 25 2 1 27 27 H 1.09005 * 109.47212 * 269.97873 * 1 2 3 28 28 H 1.09005 * 109.46963 * 29.97621 * 1 2 3 29 29 H 1.09003 * 109.47315 * 149.97766 * 1 2 3 30 30 H 1.08001 * 119.93381 * 0.02797 * 3 2 1 31 31 H 1.07997 * 119.96707 * 179.97438 * 4 3 2 32 32 H 1.08003 * 120.02824 * 180.02562 * 5 4 3 33 33 H 1.08001 * 126.52635 * 359.96937 * 8 7 6 34 34 H 1.08004 * 125.79796 * 180.15185 * 9 8 7 35 35 H 1.09003 * 109.47431 * 59.99588 * 15 13 12 36 36 H 1.08993 * 109.47497 * 179.97438 * 15 13 12 37 37 H 1.09002 * 109.47317 * 299.99718 * 15 13 12 38 38 H 1.08996 * 109.46892 * 185.00677 * 16 13 12 39 39 H 1.09000 * 109.46970 * 305.00107 * 16 13 12 40 40 H 0.97001 * 119.99805 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.47015 * 90.00201 * 26 25 2 42 42 H 1.09000 * 109.46646 * 209.99353 * 26 25 2 43 43 H 1.09000 * 109.47248 * 330.00071 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5804 1.2020 0.0005 5 6 4.2758 0.0083 0.0005 6 6 3.5852 -1.1957 0.0049 7 7 4.2882 -2.4087 0.0102 8 6 5.1053 -2.8793 1.0159 9 6 5.5724 -4.0737 0.6145 10 7 5.0724 -4.3370 -0.6047 11 6 4.2988 -3.3454 -0.9811 12 16 3.4240 -3.2419 -2.5071 13 6 3.9237 -4.8088 -3.2627 14 1 5.0117 -4.8670 -3.2930 15 6 3.3736 -5.9723 -2.4354 16 6 3.3689 -4.8882 -4.6864 17 6 4.0046 -3.8165 -5.5338 18 1 4.7319 -3.1459 -5.1003 19 6 3.6585 -3.6924 -6.8626 20 7 4.2137 -2.7573 -7.6022 21 14 2.4011 -4.8527 -7.6125 22 1 1.0418 -4.2741 -7.4613 23 1 2.7007 -5.0424 -9.0544 24 1 2.4611 -6.1637 -6.9177 25 6 2.1968 -1.1964 -0.0005 26 6 1.4432 -2.5015 -0.0005 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6563 2.1324 0.0005 31 1 4.1172 2.1391 0.0001 32 1 5.3558 0.0120 0.0014 33 1 5.3262 -2.3834 1.9496 34 1 6.2402 -4.7116 1.1746 35 1 2.2855 -5.9142 -2.4051 36 1 3.6741 -6.9159 -2.8906 37 1 3.7688 -5.9158 -1.4211 38 1 3.5936 -5.8672 -5.1098 39 1 2.2891 -4.7412 -4.6643 40 1 3.9699 -2.6699 -8.5370 41 1 1.2611 -2.8159 -1.0282 42 1 2.0325 -3.2613 0.5128 43 1 0.4909 -2.3713 0.5137 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347626671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:09 Heat of formation + Delta-G solvation = 62.381647 kcal Electronic energy + Delta-G solvation = -23993.869330 eV Core-core repulsion = 20744.293120 eV Total energy + Delta-G solvation = -3249.576210 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.09229 -40.44449 -36.53642 -35.35137 -34.43733 -34.13707 -31.56953 -30.58551 -29.66057 -28.49193 -27.38097 -24.95740 -24.19865 -22.74424 -22.58603 -21.84710 -21.35177 -19.17401 -18.90233 -17.37870 -17.27952 -16.79127 -16.46670 -16.02422 -15.66775 -15.34391 -15.11447 -14.98192 -14.80110 -14.39181 -14.23425 -14.03780 -13.99289 -13.74132 -13.58523 -13.44323 -13.06682 -12.93671 -12.85454 -12.67520 -12.37128 -12.32102 -12.04955 -11.77880 -11.65970 -11.48158 -11.12655 -11.00513 -10.93935 -10.73410 -10.30519 -9.66923 -9.62439 -8.31979 -8.22433 -6.30292 -0.00483 0.26298 0.40325 0.92952 1.36637 1.37819 1.40282 1.50033 1.89741 2.02798 2.37236 2.56036 3.09090 3.72326 3.75585 3.81089 4.00939 4.03709 4.14611 4.22961 4.27343 4.36817 4.45754 4.52895 4.57713 4.62223 4.65288 4.75953 4.84226 4.86439 4.88478 4.97566 5.04120 5.10707 5.11544 5.25642 5.27584 5.32813 5.35268 5.39275 5.53263 5.60320 5.71911 5.79435 6.18632 6.28607 6.75988 6.88403 7.32431 8.90523 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012787 B = 0.004578 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.174850 B = 6114.221052 C = 7074.515520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.083 4.083 3 C -0.105 4.105 4 C -0.110 4.110 5 C -0.122 4.122 6 C 0.084 3.916 7 N -0.402 5.402 8 C -0.043 4.043 9 C -0.034 4.034 10 N -0.512 5.512 11 C 0.187 3.813 12 S -0.021 6.021 13 C -0.042 4.042 14 H 0.067 0.933 15 C -0.136 4.136 16 C 0.006 3.994 17 C -0.525 4.525 18 H 0.036 0.964 19 C 0.009 3.991 20 N -0.948 5.948 21 Si 0.943 3.057 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.242 1.242 25 C -0.080 4.080 26 C -0.118 4.118 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.127 0.873 33 H 0.208 0.792 34 H 0.199 0.801 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.028 0.972 40 H 0.266 0.734 41 H 0.076 0.924 42 H 0.046 0.954 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.030 5.096 21.652 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.128 4.128 5 C -0.141 4.141 6 C -0.006 4.006 7 N -0.084 5.084 8 C -0.176 4.176 9 C -0.182 4.182 10 N -0.235 5.235 11 C -0.182 4.182 12 S 0.211 5.789 13 C -0.171 4.171 14 H 0.086 0.914 15 C -0.195 4.195 16 C -0.033 4.033 17 C -0.563 4.563 18 H 0.054 0.946 19 C -0.188 4.188 20 N -0.589 5.589 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.166 1.166 25 C -0.081 4.081 26 C -0.175 4.175 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.178 0.822 31 H 0.176 0.824 32 H 0.145 0.855 33 H 0.225 0.775 34 H 0.216 0.784 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.630 5.388 20.589 22.609 hybrid contribution 1.038 -0.545 0.088 1.176 sum -6.592 4.842 20.677 22.236 Atomic orbital electron populations 1.20907 0.88611 1.03997 1.03658 1.20057 0.97911 0.91431 0.98972 1.21563 0.94230 0.98575 0.97890 1.21348 0.94755 0.97709 0.99035 1.21281 1.00554 0.91427 1.00854 1.17803 0.91061 0.83855 1.07872 1.43029 1.36284 1.14820 1.14283 1.23390 0.99543 0.98498 0.96139 1.22842 1.04679 0.97291 0.93417 1.70780 1.13199 1.24834 1.14648 1.25592 1.05322 0.89913 0.97343 1.85919 1.57379 1.31174 1.04419 1.23118 1.02559 0.93316 0.98145 0.91424 1.22044 1.01054 0.96264 1.00134 1.19460 0.96421 0.97371 0.90064 1.21339 1.24321 1.15472 0.95184 0.94587 1.25931 0.98314 0.96974 0.97543 1.70072 1.45431 1.35346 1.08028 0.85759 0.79284 0.80693 0.77616 1.19120 1.21021 1.16550 1.19969 0.91377 0.97141 0.99640 1.20920 1.00386 0.92957 1.03191 0.89221 0.89666 0.91318 0.82249 0.82421 0.85471 0.77505 0.78405 0.91695 0.91026 0.91088 0.93678 0.95330 0.92552 0.90580 0.93517 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.19 71.24 0.65 -1.06 16 2 C -0.08 -1.74 5.88 -19.88 -0.12 -1.86 16 3 C -0.10 -1.89 9.70 22.29 0.22 -1.68 16 4 C -0.11 -2.15 10.04 22.25 0.22 -1.92 16 5 C -0.12 -3.06 9.92 22.38 0.22 -2.84 16 6 C 0.08 2.43 5.47 38.08 0.21 2.64 16 7 N -0.40 -12.74 2.11 -346.08 -0.73 -13.47 16 8 C -0.04 -1.12 11.51 82.86 0.95 -0.17 16 9 C -0.03 -0.97 11.84 83.42 0.99 0.01 16 10 N -0.51 -18.91 8.71 -196.23 -1.71 -20.61 16 11 C 0.19 7.04 6.59 179.60 1.18 8.22 16 12 S -0.02 -0.87 18.61 -56.49 -1.05 -1.92 16 13 C -0.04 -1.80 2.27 30.60 0.07 -1.73 16 14 H 0.07 3.20 8.14 -2.40 -0.02 3.18 16 15 C -0.14 -4.76 9.01 71.98 0.65 -4.12 16 16 C 0.01 0.27 3.51 29.85 0.10 0.37 16 17 C -0.52 -30.64 9.09 25.60 0.23 -30.41 16 18 H 0.04 2.36 7.84 -2.91 -0.02 2.34 16 19 C 0.01 0.55 5.47 84.65 0.46 1.02 16 20 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 21 Si 0.94 44.12 27.47 68.60 1.88 46.00 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 25 C -0.08 -2.10 5.74 -19.75 -0.11 -2.21 16 26 C -0.12 -3.02 7.82 71.24 0.56 -2.46 16 27 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.08 1.02 8.09 -2.38 -0.02 1.00 16 29 H 0.07 1.11 6.70 -2.39 -0.02 1.09 16 30 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.21 3.68 8.06 -2.91 -0.02 3.66 16 34 H 0.20 4.23 8.06 -2.91 -0.02 4.21 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.07 2.51 5.89 -2.39 -0.01 2.49 16 38 H 0.05 2.08 7.20 -2.39 -0.02 2.06 16 39 H 0.03 1.32 7.57 -2.39 -0.02 1.30 16 40 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.08 2.21 6.80 -2.39 -0.02 2.19 16 42 H 0.05 1.33 7.14 -2.39 -0.02 1.31 16 43 H 0.09 1.85 6.70 -2.39 -0.02 1.84 16 Total: -1.00 -73.75 359.74 6.13 -67.62 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.94 Total: 20.48 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 6.49 Total: -38.19 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -2.14 Total: -93.99 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -1.05 Total: -1.92 kcal Total: -73.75 6.13 -67.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347626671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.000 kcal (2) G-P(sol) polarization free energy of solvation -73.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds