Wall clock time and date at job start Tue Mar 31 2020 11:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33644 * 126.03685 * 2 1 4 4 N 1.31771 * 114.50127 * 179.97438 * 3 2 1 5 5 C 1.29035 * 117.12528 * 0.02562 * 4 3 2 6 6 C 1.50696 * 124.91445 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47522 * 64.97633 * 6 5 4 8 8 C 1.53000 * 109.46866 * 184.97428 * 6 5 4 9 9 N 1.46905 * 109.47441 * 304.96913 * 6 5 4 10 10 C 1.46894 * 111.00319 * 180.02562 * 9 6 5 11 11 C 1.50697 * 109.47233 * 180.02562 * 10 9 6 12 12 C 1.38638 * 119.74530 * 269.72846 * 11 10 9 13 13 C 1.37622 * 120.24729 * 179.72019 * 12 11 10 14 14 C 1.40723 * 119.74279 * 0.57205 * 13 12 11 15 15 C 1.41392 * 120.24531 * 179.68289 * 14 13 12 16 16 H 1.08002 * 120.00008 * 204.40092 * 15 14 13 17 17 C 1.39949 * 119.99954 * 24.40030 * 15 14 13 18 18 N 1.30822 * 119.99799 * 17.85654 * 17 15 14 19 19 Si 1.86800 * 119.99686 * 197.86183 * 17 15 14 20 20 H 1.48496 * 109.47240 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47459 * 120.00186 * 19 17 15 22 22 H 1.48505 * 109.46479 * 239.99642 * 19 17 15 23 23 C 1.40717 * 119.51144 * 359.69902 * 14 13 12 24 24 C 1.37615 * 119.74544 * 0.02562 * 23 14 13 25 25 S 1.70971 * 110.16346 * 359.72466 * 5 4 3 26 26 H 1.08999 * 109.47126 * 90.02701 * 1 2 3 27 27 H 1.08999 * 109.47220 * 330.02708 * 1 2 3 28 28 H 1.09003 * 109.47200 * 210.01937 * 1 2 3 29 29 H 1.07997 * 122.74972 * 0.02562 * 3 2 1 30 30 H 1.08994 * 109.47443 * 59.99745 * 7 6 5 31 31 H 1.08998 * 109.47367 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.46682 * 299.99413 * 7 6 5 33 33 H 1.08995 * 109.47493 * 60.00165 * 8 6 5 34 34 H 1.09004 * 109.47324 * 179.97438 * 8 6 5 35 35 H 1.09001 * 109.47057 * 299.99964 * 8 6 5 36 36 H 1.00898 * 110.99865 * 303.96362 * 9 6 5 37 37 H 1.09002 * 109.47165 * 300.00615 * 10 9 6 38 38 H 1.09002 * 109.47057 * 60.00150 * 10 9 6 39 39 H 1.07995 * 119.87724 * 359.97438 * 12 11 10 40 40 H 1.07995 * 120.13267 * 180.27487 * 13 12 11 41 41 H 0.97004 * 119.99623 * 179.97438 * 18 17 15 42 42 H 1.08005 * 120.12799 * 179.97438 * 23 14 13 43 43 H 1.08002 * 119.88127 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5843 0.8172 0.0005 5 6 3.9311 -0.4257 0.0005 6 6 5.3532 -0.9244 0.0016 7 6 6.0353 -0.5178 1.3094 8 6 5.3589 -2.4492 -0.1239 9 7 6.0790 -0.3370 -1.1326 10 6 7.4720 -0.8022 -1.1639 11 6 8.1832 -0.1796 -2.3376 12 6 8.1865 -0.8282 -3.5629 13 6 8.8279 -0.2663 -4.6431 14 6 9.4923 0.9657 -4.4971 15 6 10.1603 1.5494 -5.5981 16 1 10.9703 2.2441 -5.4317 17 6 9.7719 1.2269 -6.9033 18 7 8.6028 0.6821 -7.1222 19 14 10.9229 1.5742 -8.3330 20 1 12.1744 2.1896 -7.8227 21 1 11.2443 0.3030 -9.0300 22 1 10.2647 2.5068 -9.2829 23 6 9.4871 1.6122 -3.2472 24 6 8.8344 1.0344 -2.1824 25 16 2.5436 -1.4247 0.0074 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 0.8902 0.5134 28 1 -0.3634 -0.8898 0.5141 29 1 1.9025 2.0875 0.0004 30 1 5.4968 -0.9536 2.1508 31 1 7.0640 -0.8781 1.3099 32 1 6.0312 0.5685 1.3987 33 1 4.8731 -2.7390 -1.0556 34 1 6.3875 -2.8100 -0.1236 35 1 4.8204 -2.8851 0.7176 36 1 5.6114 -0.5374 -2.0039 37 1 7.9729 -0.5121 -0.2403 38 1 7.4904 -1.8877 -1.2616 39 1 7.6803 -1.7761 -3.6712 40 1 8.8255 -0.7710 -5.5978 41 1 8.3335 0.4590 -8.0269 42 1 9.9942 2.5578 -3.1239 43 1 8.8294 1.5285 -1.2220 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348093915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:15 Heat of formation + Delta-G solvation = 55.321471 kcal Electronic energy + Delta-G solvation = -23121.314504 eV Core-core repulsion = 19871.432141 eV Total energy + Delta-G solvation = -3249.882363 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.91386 -38.15336 -37.02507 -33.92099 -32.70233 -31.47379 -29.34379 -29.07547 -27.50004 -27.26275 -26.07483 -24.35802 -23.23857 -20.96764 -20.90389 -19.66735 -18.90269 -17.81942 -17.25539 -16.08501 -15.32596 -15.23796 -14.89846 -14.41900 -14.31575 -13.98054 -13.67450 -13.52883 -13.28892 -13.06565 -12.92471 -12.79427 -12.51427 -12.43974 -11.96362 -11.89575 -11.73403 -11.49296 -11.34203 -11.25755 -11.14340 -10.94463 -10.87232 -10.51514 -10.27419 -9.56349 -9.45459 -9.35619 -9.23936 -9.10954 -8.80656 -8.02648 -7.40546 -7.24912 -6.73598 -4.31495 0.65966 1.26711 1.70766 2.74984 2.88239 3.08387 3.13124 3.14080 3.20713 3.95066 4.04130 4.43798 4.73774 4.77109 4.82496 4.94502 5.01373 5.14146 5.23560 5.44298 5.54091 5.58566 5.67604 5.69989 5.74996 5.79675 5.88351 5.94906 6.03333 6.17189 6.30935 6.35185 6.44096 6.47933 6.98811 7.10768 7.31622 7.37449 7.42499 7.65299 7.72158 7.84681 7.93924 8.09562 8.18488 8.34744 8.67956 8.93349 9.01969 10.20822 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.002743 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.018670 B =10206.157533 C =10807.675152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.236 4.236 3 C 0.034 3.966 4 N -0.444 5.444 5 C 0.069 3.931 6 C 0.187 3.813 7 C -0.131 4.131 8 C -0.194 4.194 9 N -0.658 5.658 10 C 0.122 3.878 11 C -0.213 4.213 12 C -0.095 4.095 13 C -0.167 4.167 14 C 0.112 3.888 15 C -0.462 4.462 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.792 5.792 19 Si 0.906 3.094 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.228 4.228 24 C -0.066 4.066 25 S 0.104 5.896 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.172 0.828 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.342 0.658 37 H 0.067 0.933 38 H 0.024 0.976 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.279 0.721 42 H 0.090 0.910 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.821 -6.159 12.868 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.357 4.357 3 C -0.117 4.117 4 N -0.156 5.156 5 C -0.211 4.211 6 C 0.092 3.908 7 C -0.190 4.190 8 C -0.253 4.253 9 N -0.289 5.289 10 C -0.006 4.006 11 C -0.214 4.214 12 C -0.114 4.114 13 C -0.186 4.186 14 C 0.110 3.890 15 C -0.492 4.492 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.418 5.418 19 Si 0.731 3.269 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.200 1.200 23 C -0.248 4.248 24 C -0.085 4.085 25 S 0.360 5.640 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.189 0.811 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.161 0.839 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.100 0.900 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.581 -6.308 13.022 19.174 hybrid contribution -0.179 0.216 -1.213 1.245 sum -12.759 -6.092 11.809 18.422 Atomic orbital electron populations 1.20189 0.87019 1.03097 1.02836 1.26025 1.01479 0.95508 1.12665 1.21793 0.87112 0.99993 1.02783 1.66174 1.16800 1.18657 1.13955 1.27057 0.99571 0.91063 1.03363 1.19423 0.85377 0.90953 0.95049 1.21836 1.00147 1.03308 0.93731 1.22710 1.03848 0.96261 1.02518 1.60766 1.02554 1.61227 1.04400 1.20710 0.86768 0.95389 0.97704 1.18859 1.09045 0.99325 0.94215 1.20514 0.99823 0.97875 0.93187 1.21262 1.03284 0.96482 0.97588 1.17630 0.89322 0.90379 0.91701 1.19631 1.15947 1.23540 0.90073 0.90469 1.25911 0.94603 0.93072 1.00613 1.69847 1.17213 1.31636 1.23088 0.86299 0.81308 0.78897 0.80436 1.18405 1.19751 1.20036 1.20980 1.08565 1.00494 0.94741 1.20337 0.96998 0.94322 0.96831 1.83875 0.99185 1.11759 1.69225 0.90653 0.90399 0.91346 0.81125 0.92755 0.91319 0.90775 0.91924 0.90138 0.91814 0.83903 0.91456 0.95780 0.90008 0.86604 0.91023 0.89145 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.42 36.01 0.38 -0.15 16 2 C -0.24 -2.56 6.60 -35.92 -0.24 -2.79 16 3 C 0.03 0.43 11.25 -19.19 -0.22 0.22 16 4 N -0.44 -6.83 10.54 -11.87 -0.13 -6.96 16 5 C 0.07 0.95 6.02 -13.46 -0.08 0.87 16 6 C 0.19 2.53 0.93 -132.75 -0.12 2.40 16 7 C -0.13 -1.65 8.22 37.16 0.31 -1.35 16 8 C -0.19 -2.18 7.30 37.16 0.27 -1.91 16 9 N -0.66 -10.94 6.07 -102.40 -0.62 -11.56 16 10 C 0.12 2.08 5.02 -4.98 -0.02 2.06 16 11 C -0.21 -4.58 5.42 -104.33 -0.56 -5.15 16 12 C -0.09 -2.19 9.67 -39.66 -0.38 -2.58 16 13 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 14 C 0.11 3.03 5.58 -106.82 -0.60 2.44 16 15 C -0.46 -12.45 9.05 -37.74 -0.34 -12.80 16 16 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 17 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 18 N -0.79 -20.74 10.95 55.55 0.61 -20.14 16 19 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.23 -5.73 9.80 -38.87 -0.38 -6.11 16 24 C -0.07 -1.51 9.67 -39.66 -0.38 -1.89 16 25 S 0.10 1.16 21.59 -107.50 -2.32 -1.16 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.17 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.71 8.03 -51.93 -0.42 0.29 16 34 H 0.08 0.89 6.40 -51.93 -0.33 0.56 16 35 H 0.06 0.61 7.81 -51.93 -0.41 0.21 16 36 H 0.34 6.05 8.70 -39.29 -0.34 5.71 16 37 H 0.07 1.10 6.24 -51.93 -0.32 0.77 16 38 H 0.02 0.38 6.24 -51.93 -0.32 0.06 16 39 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.12 3.13 6.15 -52.49 -0.32 2.80 16 41 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 42 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 43 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -29.03 363.97 -10.97 -39.99 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -6.16 Total: 10.09 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -2.81 Total: -29.59 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: -0.14 Total: -38.65 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.32 Total: -1.16 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.03 -10.97 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348093915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.314 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds