Wall clock time and date at job start Tue Mar 31 2020 11:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33644 * 126.03685 * 2 1 4 4 N 1.31771 * 114.50127 * 179.97438 * 3 2 1 5 5 C 1.29035 * 117.12528 * 0.02562 * 4 3 2 6 6 C 1.50696 * 124.91445 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47522 * 64.97633 * 6 5 4 8 8 C 1.53000 * 109.46866 * 184.97428 * 6 5 4 9 9 N 1.46905 * 109.47441 * 304.96913 * 6 5 4 10 10 C 1.46894 * 111.00319 * 180.02562 * 9 6 5 11 11 C 1.50697 * 109.47233 * 180.02562 * 10 9 6 12 12 C 1.38638 * 119.74530 * 269.72846 * 11 10 9 13 13 C 1.37622 * 120.24729 * 179.72019 * 12 11 10 14 14 C 1.40723 * 119.74279 * 0.57205 * 13 12 11 15 15 C 1.41392 * 120.24531 * 179.68289 * 14 13 12 16 16 H 1.08002 * 120.00008 * 204.40092 * 15 14 13 17 17 C 1.39949 * 119.99954 * 24.40030 * 15 14 13 18 18 N 1.30822 * 119.99799 * 17.85654 * 17 15 14 19 19 Si 1.86800 * 119.99686 * 197.86183 * 17 15 14 20 20 H 1.48496 * 109.47240 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47459 * 120.00186 * 19 17 15 22 22 H 1.48505 * 109.46479 * 239.99642 * 19 17 15 23 23 C 1.40717 * 119.51144 * 359.69902 * 14 13 12 24 24 C 1.37615 * 119.74544 * 0.02562 * 23 14 13 25 25 S 1.70971 * 110.16346 * 359.72466 * 5 4 3 26 26 H 1.08999 * 109.47126 * 90.02701 * 1 2 3 27 27 H 1.08999 * 109.47220 * 330.02708 * 1 2 3 28 28 H 1.09003 * 109.47200 * 210.01937 * 1 2 3 29 29 H 1.07997 * 122.74972 * 0.02562 * 3 2 1 30 30 H 1.08994 * 109.47443 * 59.99745 * 7 6 5 31 31 H 1.08998 * 109.47367 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.46682 * 299.99413 * 7 6 5 33 33 H 1.08995 * 109.47493 * 60.00165 * 8 6 5 34 34 H 1.09004 * 109.47324 * 179.97438 * 8 6 5 35 35 H 1.09001 * 109.47057 * 299.99964 * 8 6 5 36 36 H 1.00898 * 110.99865 * 303.96362 * 9 6 5 37 37 H 1.09002 * 109.47165 * 300.00615 * 10 9 6 38 38 H 1.09002 * 109.47057 * 60.00150 * 10 9 6 39 39 H 1.07995 * 119.87724 * 359.97438 * 12 11 10 40 40 H 1.07995 * 120.13267 * 180.27487 * 13 12 11 41 41 H 0.97004 * 119.99623 * 179.97438 * 18 17 15 42 42 H 1.08005 * 120.12799 * 179.97438 * 23 14 13 43 43 H 1.08002 * 119.88127 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5843 0.8172 0.0005 5 6 3.9311 -0.4257 0.0005 6 6 5.3532 -0.9244 0.0016 7 6 6.0353 -0.5178 1.3094 8 6 5.3589 -2.4492 -0.1239 9 7 6.0790 -0.3370 -1.1326 10 6 7.4720 -0.8022 -1.1639 11 6 8.1832 -0.1796 -2.3376 12 6 8.1865 -0.8282 -3.5629 13 6 8.8279 -0.2663 -4.6431 14 6 9.4923 0.9657 -4.4971 15 6 10.1603 1.5494 -5.5981 16 1 10.9703 2.2441 -5.4317 17 6 9.7719 1.2269 -6.9033 18 7 8.6028 0.6821 -7.1222 19 14 10.9229 1.5742 -8.3330 20 1 12.1744 2.1896 -7.8227 21 1 11.2443 0.3030 -9.0300 22 1 10.2647 2.5068 -9.2829 23 6 9.4871 1.6122 -3.2472 24 6 8.8344 1.0344 -2.1824 25 16 2.5436 -1.4247 0.0074 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 0.8902 0.5134 28 1 -0.3634 -0.8898 0.5141 29 1 1.9025 2.0875 0.0004 30 1 5.4968 -0.9536 2.1508 31 1 7.0640 -0.8781 1.3099 32 1 6.0312 0.5685 1.3987 33 1 4.8731 -2.7390 -1.0556 34 1 6.3875 -2.8100 -0.1236 35 1 4.8204 -2.8851 0.7176 36 1 5.6114 -0.5374 -2.0039 37 1 7.9729 -0.5121 -0.2403 38 1 7.4904 -1.8877 -1.2616 39 1 7.6803 -1.7761 -3.6712 40 1 8.8255 -0.7710 -5.5978 41 1 8.3335 0.4590 -8.0269 42 1 9.9942 2.5578 -3.1239 43 1 8.8294 1.5285 -1.2220 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348093915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:14 Heat of formation + Delta-G solvation = 39.164845 kcal Electronic energy + Delta-G solvation = -23122.015107 eV Core-core repulsion = 19871.432141 eV Total energy + Delta-G solvation = -3250.582966 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.89646 -39.68032 -38.45664 -35.71831 -33.79045 -32.74813 -31.17257 -30.75154 -28.43749 -28.21846 -27.64076 -25.39334 -24.68582 -22.85360 -22.16306 -21.23844 -19.89452 -19.20322 -18.75411 -17.40662 -16.95235 -16.35928 -15.97272 -15.90160 -15.60717 -15.28308 -15.15603 -14.82796 -14.40688 -14.20279 -13.91785 -13.80023 -13.78195 -13.59935 -13.48271 -13.38719 -12.92421 -12.90408 -12.73766 -12.62117 -12.42472 -12.30028 -12.18742 -11.95491 -11.91639 -11.35663 -11.24576 -11.00457 -10.44101 -10.12909 -9.70475 -9.38442 -9.25210 -9.11881 -8.62840 -6.31807 -0.25396 0.38911 0.79078 0.96535 1.18540 1.37213 1.49559 1.52915 1.91881 2.21017 2.70216 3.11732 3.37525 3.82630 3.82946 4.01951 4.08248 4.22460 4.28767 4.30680 4.39161 4.59757 4.60149 4.63266 4.70598 4.71846 4.79261 4.88534 4.90905 4.93609 5.04781 5.06140 5.17192 5.18188 5.27871 5.34967 5.40570 5.50524 5.73538 5.97039 6.12271 6.19429 6.26343 6.42062 6.44377 6.72884 6.91828 6.96291 7.06724 8.34182 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.002743 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.018670 B =10206.157533 C =10807.675152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.225 4.225 3 C 0.005 3.995 4 N -0.481 5.481 5 C 0.039 3.961 6 C 0.186 3.814 7 C -0.128 4.128 8 C -0.188 4.188 9 N -0.673 5.673 10 C 0.130 3.870 11 C -0.197 4.197 12 C -0.097 4.097 13 C -0.190 4.190 14 C 0.079 3.921 15 C -0.503 4.503 16 H 0.072 0.928 17 C 0.034 3.966 18 N -0.826 5.826 19 Si 0.982 3.018 20 H -0.259 1.259 21 H -0.262 1.262 22 H -0.266 1.266 23 C -0.247 4.247 24 C -0.072 4.072 25 S 0.144 5.856 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.183 0.817 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.333 0.667 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.287 0.713 42 H 0.091 0.909 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.286 -7.589 13.959 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.347 4.347 3 C -0.145 4.145 4 N -0.195 5.195 5 C -0.239 4.239 6 C 0.092 3.908 7 C -0.187 4.187 8 C -0.248 4.248 9 N -0.304 5.304 10 C 0.003 3.997 11 C -0.199 4.199 12 C -0.115 4.115 13 C -0.210 4.210 14 C 0.076 3.924 15 C -0.533 4.533 16 H 0.090 0.910 17 C -0.180 4.180 18 N -0.452 5.452 19 Si 0.803 3.197 20 H -0.183 1.183 21 H -0.187 1.187 22 H -0.191 1.191 23 C -0.266 4.266 24 C -0.091 4.091 25 S 0.399 5.601 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.200 0.800 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.151 0.849 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.050 -7.743 14.141 21.385 hybrid contribution 0.090 0.626 -1.380 1.518 sum -13.960 -7.118 12.760 20.208 Atomic orbital electron populations 1.20364 0.84409 1.04648 1.03855 1.26533 1.03179 0.94910 1.10044 1.22053 0.86739 1.01290 1.04432 1.66148 1.18489 1.20017 1.14823 1.27093 1.00587 0.91488 1.04751 1.19509 0.85221 0.92248 0.93821 1.21815 1.00865 1.01921 0.94103 1.22652 1.04489 0.94337 1.03310 1.60628 1.02344 1.62438 1.05025 1.20621 0.87009 0.96129 0.95984 1.19331 1.07174 0.98226 0.95119 1.20786 0.99051 0.98753 0.92947 1.21248 1.04959 0.96757 0.98008 1.17969 0.90478 0.91256 0.92669 1.19848 1.16885 1.25068 0.91456 0.91009 1.26756 0.95925 0.92478 1.02861 1.69895 1.18628 1.32494 1.24200 0.85169 0.78819 0.79095 0.76657 1.18285 1.18688 1.19101 1.21169 1.09430 1.00897 0.95131 1.20639 0.96452 0.94915 0.97086 1.83628 0.97508 1.10788 1.68158 0.89720 0.88788 0.89879 0.79968 0.90872 0.90543 0.93057 0.92062 0.89653 0.89867 0.84895 0.90190 0.93784 0.87620 0.88291 0.90251 0.89087 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.42 71.24 0.74 -0.11 16 2 C -0.23 -4.42 6.60 24.64 0.16 -4.25 16 3 C 0.00 0.12 11.25 83.66 0.94 1.06 16 4 N -0.48 -14.60 10.54 -191.46 -2.02 -16.62 16 5 C 0.04 1.03 6.02 88.52 0.53 1.56 16 6 C 0.19 4.71 0.93 2.78 0.00 4.71 16 7 C -0.13 -2.99 8.22 71.98 0.59 -2.40 16 8 C -0.19 -3.71 7.30 71.98 0.53 -3.18 16 9 N -0.67 -21.54 6.07 -477.88 -2.90 -24.44 16 10 C 0.13 4.19 5.02 85.56 0.43 4.62 16 11 C -0.20 -8.32 5.42 -19.67 -0.11 -8.43 16 12 C -0.10 -4.45 9.67 22.22 0.21 -4.24 16 13 C -0.19 -10.25 8.70 22.73 0.20 -10.05 16 14 C 0.08 4.42 5.58 -21.29 -0.12 4.31 16 15 C -0.50 -28.30 9.05 23.46 0.21 -28.09 16 16 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 17 C 0.03 1.79 5.14 85.26 0.44 2.22 16 18 N -0.83 -44.56 10.95 21.83 0.24 -44.33 16 19 Si 0.98 39.43 29.60 68.60 2.03 41.46 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 23 C -0.25 -12.78 9.80 22.73 0.22 -12.56 16 24 C -0.07 -3.30 9.67 22.22 0.21 -3.08 16 25 S 0.14 2.88 21.59 -56.49 -1.22 1.66 16 26 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.18 3.70 8.06 -2.91 -0.02 3.67 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.62 6.40 -2.39 -0.02 1.61 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.23 8.03 -2.39 -0.02 1.21 16 34 H 0.08 1.60 6.40 -2.39 -0.02 1.59 16 35 H 0.08 1.31 7.81 -2.39 -0.02 1.29 16 36 H 0.33 11.52 8.70 -89.70 -0.78 10.74 16 37 H 0.08 2.40 6.24 -2.39 -0.01 2.39 16 38 H 0.04 1.26 6.24 -2.39 -0.01 1.25 16 39 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.10 5.58 6.15 -2.91 -0.02 5.56 16 41 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 42 H 0.09 4.54 8.06 -2.91 -0.02 4.51 16 43 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -65.38 363.97 1.58 -63.80 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: 0.24 Total: 36.38 kcal Atomic # 6 Polarization: -63.12 SS G_CDS: 5.20 Total: -57.91 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -4.68 Total: -85.39 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.22 Total: 1.66 kcal Total: -65.38 1.58 -63.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348093915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.968 kcal (2) G-P(sol) polarization free energy of solvation -65.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds