Wall clock time and date at job start Tue Mar 31 2020 11:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47583 * 2 1 4 4 N 1.29030 * 124.91320 * 90.32608 * 3 2 1 5 5 C 1.31788 * 117.11902 * 180.23085 * 4 3 2 6 6 C 1.50702 * 122.74830 * 179.75305 * 5 4 3 7 7 H 1.08998 * 109.47325 * 144.70805 * 6 5 4 8 8 C 1.52995 * 109.47151 * 264.71207 * 6 5 4 9 9 N 1.46902 * 109.46984 * 24.70747 * 6 5 4 10 10 C 1.46904 * 110.99908 * 154.99690 * 9 6 5 11 11 C 1.50705 * 109.46952 * 179.97438 * 10 9 6 12 12 C 1.38630 * 119.74253 * 90.00584 * 11 10 9 13 13 C 1.37623 * 120.24117 * 180.27159 * 12 11 10 14 14 C 1.40707 * 119.74849 * 359.52215 * 13 12 11 15 15 C 1.41400 * 120.24843 * 180.22492 * 14 13 12 16 16 H 1.07994 * 120.00480 * 204.52708 * 15 14 13 17 17 C 1.39950 * 119.99509 * 24.53120 * 15 14 13 18 18 N 1.30821 * 119.99991 * 17.72383 * 17 15 14 19 19 Si 1.86800 * 119.99756 * 197.72017 * 17 15 14 20 20 H 1.48499 * 109.47128 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46931 * 119.99981 * 19 17 15 22 22 H 1.48490 * 109.47155 * 239.99623 * 19 17 15 23 23 C 1.40715 * 119.51064 * 0.47652 * 14 13 12 24 24 C 1.37618 * 119.74364 * 359.74989 * 23 14 13 25 25 C 1.33635 * 114.50298 * 359.48458 * 5 4 3 26 26 S 1.70974 * 124.91694 * 270.02990 * 3 2 1 27 27 H 1.08999 * 109.47191 * 300.00109 * 1 2 3 28 28 H 1.09003 * 109.47513 * 60.00049 * 1 2 3 29 29 H 1.09007 * 109.47516 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46799 * 239.99730 * 2 1 3 31 31 H 1.08999 * 109.47292 * 120.00425 * 2 1 3 32 32 H 1.09006 * 109.47510 * 59.99904 * 8 6 5 33 33 H 1.08999 * 109.47415 * 180.02562 * 8 6 5 34 34 H 1.09000 * 109.47463 * 300.00026 * 8 6 5 35 35 H 1.00894 * 111.00535 * 278.96004 * 9 6 5 36 36 H 1.09004 * 109.46611 * 60.00589 * 10 9 6 37 37 H 1.08991 * 109.47525 * 300.00433 * 10 9 6 38 38 H 1.08001 * 119.88189 * 0.02562 * 12 11 10 39 39 H 1.08002 * 120.12205 * 179.72192 * 13 12 11 40 40 H 0.97005 * 119.99803 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.12804 * 179.73261 * 23 14 13 42 42 H 1.08002 * 119.87235 * 180.02562 * 24 23 14 43 43 H 1.08001 * 126.03991 * 180.26803 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2843 2.1149 1.0581 5 6 2.7142 3.3478 0.8794 6 6 3.0412 4.2712 2.0246 7 1 3.8888 4.9005 1.7533 8 6 1.8289 5.1528 2.3311 9 7 3.3816 3.4766 3.2124 10 6 4.2452 4.2377 4.1251 11 6 4.5720 3.3923 5.3292 12 6 5.6945 2.5791 5.3144 13 6 5.9996 1.7987 6.4062 14 6 5.1727 1.8361 7.5440 15 6 5.4788 1.0423 8.6734 16 1 4.6959 0.7542 9.3593 17 6 6.7964 0.6300 8.9024 18 7 7.7861 1.2387 8.3013 19 14 7.1419 -0.7894 10.0667 20 1 5.8608 -1.3038 10.6139 21 1 7.8368 -1.8757 9.3302 22 1 8.0027 -0.3175 11.1808 23 6 4.0358 2.6654 7.5477 24 6 3.7475 3.4337 6.4430 25 6 2.8418 3.7103 -0.4005 26 16 2.3580 2.3436 -1.4020 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.9812 4.5234 2.6025 33 1 2.0656 5.8209 3.1591 34 1 1.5762 5.7423 1.4498 35 1 2.5491 3.1570 3.6844 36 1 3.7273 5.1416 4.4460 37 1 5.1668 4.5100 3.6109 38 1 6.3299 2.5548 4.4414 39 1 6.8721 1.1624 6.3908 40 1 8.6994 0.9527 8.4597 41 1 3.3919 2.6985 8.4141 42 1 2.8758 4.0712 6.4437 43 1 3.1814 4.6712 -0.7580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348310115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:06 Heat of formation + Delta-G solvation = 48.548248 kcal Electronic energy + Delta-G solvation = -22825.289725 eV Core-core repulsion = 19575.113653 eV Total energy + Delta-G solvation = -3250.176071 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.04220 -37.77585 -36.26663 -34.18146 -33.51890 -31.34838 -29.59135 -29.16837 -28.40607 -26.21891 -25.49672 -23.89183 -22.67773 -21.25466 -20.86240 -19.91565 -19.56355 -17.53270 -17.24320 -15.97507 -15.27091 -15.11759 -14.81389 -14.58938 -14.52722 -14.02200 -14.00086 -13.55964 -13.19956 -13.18667 -12.82883 -12.49226 -12.40557 -12.30965 -11.88548 -11.85435 -11.61738 -11.48768 -11.39894 -11.32308 -11.17890 -11.03464 -10.84975 -10.39963 -10.31915 -9.56586 -9.48713 -9.38608 -9.31547 -9.09227 -8.71881 -7.93842 -7.37471 -7.24605 -6.71652 -4.29822 0.70616 1.34907 1.70509 2.77599 2.87643 3.09886 3.14401 3.15669 3.21711 3.96748 4.00529 4.49581 4.72913 4.81390 4.92321 5.02690 5.08024 5.16058 5.22016 5.36074 5.48089 5.61246 5.66730 5.72469 5.78888 5.82109 5.93656 5.96353 5.97072 6.04600 6.25896 6.30227 6.42231 6.51537 7.01611 7.12130 7.35787 7.42119 7.43491 7.67570 7.82028 7.89447 7.97748 8.11761 8.21701 8.36022 8.70669 8.95119 9.03982 10.22939 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.002692 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.424748 B =10400.409313 C =11205.720443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.048 4.048 3 C 0.055 3.945 4 N -0.439 5.439 5 C 0.098 3.902 6 C 0.153 3.847 7 H 0.090 0.910 8 C -0.176 4.176 9 N -0.665 5.665 10 C 0.124 3.876 11 C -0.210 4.210 12 C -0.078 4.078 13 C -0.167 4.167 14 C 0.112 3.888 15 C -0.463 4.463 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.906 3.094 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.227 4.227 24 C -0.085 4.085 25 C -0.268 4.268 26 S 0.086 5.914 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.347 0.653 36 H 0.019 0.981 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.279 0.721 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.105 2.395 -17.719 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.224 4.224 4 N -0.152 5.152 5 C -0.035 4.035 6 C 0.039 3.961 7 H 0.108 0.892 8 C -0.235 4.235 9 N -0.296 5.296 10 C -0.003 4.003 11 C -0.212 4.212 12 C -0.097 4.097 13 C -0.186 4.186 14 C 0.110 3.890 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.419 5.419 19 Si 0.731 3.269 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.201 1.201 23 C -0.247 4.247 24 C -0.103 4.103 25 C -0.407 4.407 26 S 0.341 5.659 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.167 0.833 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -9.447 1.650 -18.597 20.924 hybrid contribution -0.054 0.694 1.532 1.683 sum -9.501 2.344 -17.065 19.671 Atomic orbital electron populations 1.21752 0.93643 1.02448 1.02509 1.20220 0.96580 0.87753 1.04359 1.27154 1.02889 1.01893 0.90478 1.66060 1.13236 1.05336 1.30592 1.20318 0.98485 0.91140 0.93540 1.20063 0.96584 0.90357 0.89070 0.89238 1.22483 0.98851 1.00185 1.01985 1.60528 1.22580 1.38747 1.07724 1.20615 0.95367 0.92986 0.91379 1.18861 1.00122 1.07080 0.95088 1.20486 0.95766 0.96551 0.96853 1.21302 1.02300 1.02378 0.92639 1.17620 0.90254 0.88990 0.92141 1.19620 0.93597 1.27987 1.08085 0.90522 1.25906 0.96012 0.96213 0.96026 1.69843 1.00372 1.34848 1.36838 0.86301 0.79327 0.81280 0.80038 1.18424 1.19724 1.20066 1.20921 1.02511 1.03165 0.98104 1.20338 0.97217 0.98805 0.93982 1.26660 1.14124 1.04190 0.95712 1.83798 1.61745 1.06483 1.13888 0.91863 0.92660 0.91475 0.89916 0.88427 0.92162 0.91747 0.92353 0.83337 0.96325 0.92094 0.89605 0.86597 0.91013 0.89227 0.89977 0.80992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.05 -0.46 6.52 -27.89 -0.18 -0.64 16 3 C 0.05 0.67 6.64 -13.46 -0.09 0.58 16 4 N -0.44 -6.54 10.14 -8.06 -0.08 -6.62 16 5 C 0.10 1.34 5.80 -84.22 -0.49 0.85 16 6 C 0.15 2.06 2.93 -68.86 -0.20 1.86 16 7 H 0.09 1.13 7.80 -51.93 -0.40 0.72 16 8 C -0.18 -2.00 9.14 37.16 0.34 -1.66 16 9 N -0.66 -11.10 5.92 -109.22 -0.65 -11.75 16 10 C 0.12 2.21 5.60 -4.97 -0.03 2.18 16 11 C -0.21 -4.63 5.41 -104.33 -0.56 -5.19 16 12 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 13 C -0.17 -4.46 8.70 -38.87 -0.34 -4.80 16 14 C 0.11 3.07 5.57 -106.83 -0.60 2.47 16 15 C -0.46 -12.56 9.06 -37.74 -0.34 -12.90 16 16 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 17 C 0.08 1.94 5.14 -17.34 -0.09 1.86 16 18 N -0.79 -20.90 10.95 55.55 0.61 -20.29 16 19 Si 0.91 19.00 29.59 -169.99 -5.03 13.97 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 23 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 24 C -0.08 -1.91 9.67 -39.66 -0.38 -2.30 16 25 C -0.27 -3.04 11.14 29.12 0.32 -2.71 16 26 S 0.09 0.88 23.18 -107.50 -2.49 -1.61 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 33 H 0.06 0.72 7.45 -51.93 -0.39 0.34 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.35 6.04 8.46 -39.29 -0.33 5.71 16 36 H 0.02 0.31 7.37 -51.93 -0.38 -0.08 16 37 H 0.06 1.06 7.99 -51.93 -0.42 0.65 16 38 H 0.09 1.95 8.06 -52.49 -0.42 1.52 16 39 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 40 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 41 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 42 H 0.08 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -29.14 372.45 -11.51 -40.65 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.45 Total: 9.59 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: -3.03 Total: -29.54 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: -0.12 Total: -38.66 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.49 Total: -1.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.14 -11.51 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348310115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.197 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds