Wall clock time and date at job start Tue Mar 31 2020 11:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47583 * 2 1 4 4 N 1.29030 * 124.91320 * 90.32608 * 3 2 1 5 5 C 1.31788 * 117.11902 * 180.23085 * 4 3 2 6 6 C 1.50702 * 122.74830 * 179.75305 * 5 4 3 7 7 H 1.08998 * 109.47325 * 144.70805 * 6 5 4 8 8 C 1.52995 * 109.47151 * 264.71207 * 6 5 4 9 9 N 1.46902 * 109.46984 * 24.70747 * 6 5 4 10 10 C 1.46904 * 110.99908 * 154.99690 * 9 6 5 11 11 C 1.50705 * 109.46952 * 179.97438 * 10 9 6 12 12 C 1.38630 * 119.74253 * 90.00584 * 11 10 9 13 13 C 1.37623 * 120.24117 * 180.27159 * 12 11 10 14 14 C 1.40707 * 119.74849 * 359.52215 * 13 12 11 15 15 C 1.41400 * 120.24843 * 180.22492 * 14 13 12 16 16 H 1.07994 * 120.00480 * 204.52708 * 15 14 13 17 17 C 1.39950 * 119.99509 * 24.53120 * 15 14 13 18 18 N 1.30821 * 119.99991 * 17.72383 * 17 15 14 19 19 Si 1.86800 * 119.99756 * 197.72017 * 17 15 14 20 20 H 1.48499 * 109.47128 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46931 * 119.99981 * 19 17 15 22 22 H 1.48490 * 109.47155 * 239.99623 * 19 17 15 23 23 C 1.40715 * 119.51064 * 0.47652 * 14 13 12 24 24 C 1.37618 * 119.74364 * 359.74989 * 23 14 13 25 25 C 1.33635 * 114.50298 * 359.48458 * 5 4 3 26 26 S 1.70974 * 124.91694 * 270.02990 * 3 2 1 27 27 H 1.08999 * 109.47191 * 300.00109 * 1 2 3 28 28 H 1.09003 * 109.47513 * 60.00049 * 1 2 3 29 29 H 1.09007 * 109.47516 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46799 * 239.99730 * 2 1 3 31 31 H 1.08999 * 109.47292 * 120.00425 * 2 1 3 32 32 H 1.09006 * 109.47510 * 59.99904 * 8 6 5 33 33 H 1.08999 * 109.47415 * 180.02562 * 8 6 5 34 34 H 1.09000 * 109.47463 * 300.00026 * 8 6 5 35 35 H 1.00894 * 111.00535 * 278.96004 * 9 6 5 36 36 H 1.09004 * 109.46611 * 60.00589 * 10 9 6 37 37 H 1.08991 * 109.47525 * 300.00433 * 10 9 6 38 38 H 1.08001 * 119.88189 * 0.02562 * 12 11 10 39 39 H 1.08002 * 120.12205 * 179.72192 * 13 12 11 40 40 H 0.97005 * 119.99803 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.12804 * 179.73261 * 23 14 13 42 42 H 1.08002 * 119.87235 * 180.02562 * 24 23 14 43 43 H 1.08001 * 126.03991 * 180.26803 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2843 2.1149 1.0581 5 6 2.7142 3.3478 0.8794 6 6 3.0412 4.2712 2.0246 7 1 3.8888 4.9005 1.7533 8 6 1.8289 5.1528 2.3311 9 7 3.3816 3.4766 3.2124 10 6 4.2452 4.2377 4.1251 11 6 4.5720 3.3923 5.3292 12 6 5.6945 2.5791 5.3144 13 6 5.9996 1.7987 6.4062 14 6 5.1727 1.8361 7.5440 15 6 5.4788 1.0423 8.6734 16 1 4.6959 0.7542 9.3593 17 6 6.7964 0.6300 8.9024 18 7 7.7861 1.2387 8.3013 19 14 7.1419 -0.7894 10.0667 20 1 5.8608 -1.3038 10.6139 21 1 7.8368 -1.8757 9.3302 22 1 8.0027 -0.3175 11.1808 23 6 4.0358 2.6654 7.5477 24 6 3.7475 3.4337 6.4430 25 6 2.8418 3.7103 -0.4005 26 16 2.3580 2.3436 -1.4020 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.9812 4.5234 2.6025 33 1 2.0656 5.8209 3.1591 34 1 1.5762 5.7423 1.4498 35 1 2.5491 3.1570 3.6844 36 1 3.7273 5.1416 4.4460 37 1 5.1668 4.5100 3.6109 38 1 6.3299 2.5548 4.4414 39 1 6.8721 1.1624 6.3908 40 1 8.6994 0.9527 8.4597 41 1 3.3919 2.6985 8.4141 42 1 2.8758 4.0712 6.4437 43 1 3.1814 4.6712 -0.7580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348310115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:06 Heat of formation + Delta-G solvation = 32.744020 kcal Electronic energy + Delta-G solvation = -22825.975047 eV Core-core repulsion = 19575.113653 eV Total energy + Delta-G solvation = -3250.861394 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.97894 -39.56138 -37.54940 -35.65989 -34.73180 -32.78460 -31.21109 -30.83616 -29.54108 -27.73230 -26.48128 -25.13130 -24.01163 -22.83497 -22.12194 -21.64504 -20.53073 -19.20944 -18.48244 -17.24585 -16.97623 -16.21051 -15.91951 -15.72565 -15.63667 -15.53788 -15.18151 -15.09730 -14.64492 -14.25493 -13.99070 -13.84982 -13.79563 -13.42053 -13.27967 -13.16256 -13.07668 -12.73699 -12.67443 -12.53424 -12.36922 -12.24284 -12.18412 -11.98136 -11.89622 -11.40512 -11.21766 -11.00354 -10.40271 -10.25809 -9.59649 -9.32762 -9.28138 -9.07422 -8.62822 -6.31936 -0.16323 0.52265 0.82574 0.96864 1.17211 1.37250 1.49803 1.53078 1.93540 2.21053 2.70841 3.18119 3.43585 3.84448 3.88131 4.10146 4.19887 4.23228 4.33596 4.35826 4.38600 4.39027 4.56922 4.58206 4.65480 4.71865 4.78732 4.88489 4.91728 4.99532 5.07735 5.08710 5.14941 5.17494 5.27349 5.36887 5.40624 5.48622 5.72999 5.96028 6.12003 6.20966 6.30761 6.40868 6.55057 6.73022 6.95883 7.01543 7.06415 8.34532 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.002692 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.424748 B =10400.409313 C =11205.720443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C 0.035 3.965 4 N -0.482 5.482 5 C 0.070 3.930 6 C 0.154 3.846 7 H 0.099 0.901 8 C -0.166 4.166 9 N -0.678 5.678 10 C 0.133 3.867 11 C -0.197 4.197 12 C -0.087 4.087 13 C -0.191 4.191 14 C 0.079 3.921 15 C -0.503 4.503 16 H 0.073 0.927 17 C 0.034 3.966 18 N -0.827 5.827 19 Si 0.982 3.018 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.264 1.264 23 C -0.243 4.243 24 C -0.084 4.084 25 C -0.267 4.267 26 S 0.139 5.861 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.341 0.659 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.287 0.713 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 3.051 -19.599 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.091 4.091 3 C -0.244 4.244 4 N -0.196 5.196 5 C -0.063 4.063 6 C 0.041 3.959 7 H 0.117 0.883 8 C -0.225 4.225 9 N -0.309 5.309 10 C 0.005 3.995 11 C -0.198 4.198 12 C -0.105 4.105 13 C -0.211 4.211 14 C 0.077 3.923 15 C -0.532 4.532 16 H 0.091 0.909 17 C -0.181 4.181 18 N -0.453 5.453 19 Si 0.803 3.197 20 H -0.182 1.182 21 H -0.189 1.189 22 H -0.189 1.189 23 C -0.263 4.263 24 C -0.102 4.102 25 C -0.407 4.407 26 S 0.394 5.606 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.159 0.841 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.133 0.867 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -10.266 2.320 -20.501 23.045 hybrid contribution 0.130 0.581 1.914 2.004 sum -10.136 2.900 -18.587 21.369 Atomic orbital electron populations 1.21715 0.92620 1.03442 1.01990 1.20343 0.97436 0.86656 1.04675 1.27564 1.02763 1.02877 0.91153 1.66049 1.14763 1.06327 1.32460 1.20394 1.00193 0.91255 0.94409 1.20136 0.97748 0.90386 0.87590 0.88261 1.22379 0.97472 0.99739 1.02946 1.60391 1.22444 1.39771 1.08249 1.20497 0.96300 0.92735 0.89946 1.19325 0.98417 1.05621 0.96478 1.20703 0.96830 0.96569 0.96436 1.21247 1.02341 1.03668 0.93816 1.17959 0.91504 0.90193 0.92651 1.19850 0.94595 1.30002 1.08800 0.90873 1.26773 0.95211 0.98390 0.97698 1.69894 1.00984 1.36175 1.38249 0.85166 0.79184 0.77534 0.77842 1.18210 1.18936 1.18875 1.21151 1.02228 1.03519 0.99400 1.20675 0.98101 0.98310 0.93138 1.27018 1.12742 1.05593 0.95305 1.83565 1.60294 1.04910 1.11843 0.93780 0.91680 0.89749 0.87650 0.90041 0.93322 0.91421 0.90381 0.84055 0.94277 0.91517 0.88559 0.88585 0.90241 0.88682 0.86698 0.78500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.89 71.98 0.71 -1.37 16 2 C -0.05 -0.91 6.52 29.84 0.19 -0.71 16 3 C 0.03 0.81 6.64 88.52 0.59 1.39 16 4 N -0.48 -14.07 10.14 -179.41 -1.82 -15.89 16 5 C 0.07 1.81 5.80 41.52 0.24 2.05 16 6 C 0.15 3.86 2.93 44.17 0.13 3.98 16 7 H 0.10 2.24 7.80 -2.39 -0.02 2.23 16 8 C -0.17 -3.41 9.14 71.98 0.66 -2.76 16 9 N -0.68 -21.80 5.92 -499.45 -2.96 -24.76 16 10 C 0.13 4.48 5.60 85.56 0.48 4.96 16 11 C -0.20 -8.55 5.41 -19.68 -0.11 -8.66 16 12 C -0.09 -4.25 9.67 22.22 0.21 -4.03 16 13 C -0.19 -10.65 8.70 22.73 0.20 -10.45 16 14 C 0.08 4.49 5.57 -21.29 -0.12 4.37 16 15 C -0.50 -28.40 9.06 23.46 0.21 -28.19 16 16 H 0.07 4.00 7.91 -2.91 -0.02 3.98 16 17 C 0.03 1.77 5.14 85.26 0.44 2.21 16 18 N -0.83 -45.02 10.95 21.83 0.24 -44.78 16 19 Si 0.98 39.72 29.59 68.60 2.03 41.75 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 23 C -0.24 -12.43 9.80 22.73 0.22 -12.21 16 24 C -0.08 -3.72 9.67 22.22 0.21 -3.51 16 25 C -0.27 -5.38 11.14 66.77 0.74 -4.64 16 26 S 0.14 2.50 23.18 -56.49 -1.31 1.19 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.11 8.13 -2.38 -0.02 1.09 16 33 H 0.07 1.33 7.45 -2.39 -0.02 1.31 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.34 11.61 8.46 -89.70 -0.76 10.85 16 36 H 0.04 1.17 7.37 -2.38 -0.02 1.15 16 37 H 0.07 2.18 7.99 -2.39 -0.02 2.17 16 38 H 0.10 4.42 8.06 -2.91 -0.02 4.39 16 39 H 0.10 5.62 6.16 -2.91 -0.02 5.61 16 40 H 0.29 14.06 8.30 -92.70 -0.77 13.29 16 41 H 0.09 4.60 8.06 -2.91 -0.02 4.58 16 42 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 43 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -65.48 372.45 1.45 -64.03 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: 0.25 Total: 36.02 kcal Atomic # 6 Polarization: -62.57 SS G_CDS: 5.02 Total: -57.55 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -4.54 Total: -85.43 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.31 Total: 1.19 kcal Total: -65.48 1.45 -64.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348310115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.774 kcal (2) G-P(sol) polarization free energy of solvation -65.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds