Wall clock time and date at job start Tue Mar 31 2020 11:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46786 * 2 1 4 4 N 1.46497 * 109.46980 * 185.72307 * 3 2 1 5 5 C 1.36886 * 119.99997 * 278.65893 * 4 3 2 6 6 H 1.08001 * 119.99879 * 180.52650 * 5 4 3 7 7 C 1.39029 * 120.00171 * 0.52229 * 5 4 3 8 8 N 1.31380 * 119.99788 * 9.82793 * 7 5 4 9 9 Si 1.86796 * 120.00277 * 189.82864 * 7 5 4 10 10 H 1.48503 * 109.47240 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47318 * 119.99794 * 9 7 5 12 12 H 1.48495 * 109.47223 * 240.00127 * 9 7 5 13 13 C 1.34783 * 120.00133 * 98.66115 * 4 3 2 14 14 O 1.21615 * 119.99837 * 186.38906 * 13 4 3 15 15 C 1.47535 * 119.99870 * 6.38598 * 13 4 3 16 16 C 1.39783 * 120.07712 * 314.99709 * 15 13 4 17 17 C 1.37703 * 119.96027 * 180.25740 * 16 15 13 18 18 C 1.39026 * 120.11039 * 359.44282 * 17 16 15 19 19 N 1.39892 * 119.92267 * 180.28254 * 18 17 16 20 20 C 1.36617 * 125.67302 * 129.96961 * 19 18 17 21 21 C 1.34824 * 108.19342 * 179.82535 * 20 19 18 22 22 C 1.40970 * 107.47888 * 0.43049 * 21 20 19 23 23 C 1.34828 * 107.47772 * 359.72699 * 22 21 20 24 24 C 1.39251 * 120.15041 * 0.55860 * 18 17 16 25 25 F 1.35107 * 119.97770 * 179.70211 * 24 18 17 26 26 C 1.37904 * 120.04289 * 359.72282 * 24 18 17 27 27 H 1.08998 * 109.47445 * 299.99636 * 1 2 3 28 28 H 1.09000 * 109.47621 * 59.99985 * 1 2 3 29 29 H 1.09002 * 109.47217 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47445 * 240.00363 * 2 1 3 31 31 H 1.08995 * 109.47607 * 119.99510 * 2 1 3 32 32 H 1.08996 * 109.47177 * 65.72425 * 3 2 1 33 33 H 1.08998 * 109.46992 * 305.72016 * 3 2 1 34 34 H 0.96999 * 120.00008 * 180.02562 * 8 7 5 35 35 H 1.08003 * 120.01817 * 359.97438 * 16 15 13 36 36 H 1.07999 * 119.94622 * 179.72306 * 17 16 15 37 37 H 1.07998 * 125.90134 * 359.96748 * 20 19 18 38 38 H 1.08004 * 126.26048 * 180.12790 * 21 20 19 39 39 H 1.08000 * 126.26259 * 179.69800 * 22 21 20 40 40 H 1.07996 * 125.90034 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.05594 * 180.02562 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4984 1.4449 -0.1377 5 6 4.2897 1.2287 0.9581 6 1 5.3650 1.2389 0.8581 7 6 3.7092 0.9961 2.1998 8 7 2.4146 0.7916 2.2917 9 14 4.7697 0.9742 3.7374 10 1 6.1847 1.2301 3.3664 11 1 4.3055 2.0290 4.6739 12 1 4.6619 -0.3532 4.3942 13 6 4.0611 1.6600 -1.3434 14 8 5.2641 1.5473 -1.4818 15 6 3.2177 2.0321 -2.4953 16 6 2.0228 1.3486 -2.7384 17 6 1.2401 1.6944 -3.8173 18 6 1.6303 2.7300 -4.6588 19 7 0.8292 3.0819 -5.7502 20 6 0.4179 4.3469 -6.0616 21 6 -0.3318 4.2824 -7.1804 22 6 -0.3951 2.9291 -7.5702 23 6 0.3232 2.2169 -6.6788 24 6 2.8198 3.4140 -4.4209 25 9 3.1987 4.4158 -5.2444 26 6 3.6113 3.0691 -3.3457 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.7627 1.9259 0.9368 33 1 1.5953 1.9851 -0.8343 34 1 2.0095 0.6296 3.1581 35 1 1.7160 0.5468 -2.0831 36 1 0.3192 1.1632 -4.0075 37 1 0.6545 5.2439 -5.5086 38 1 -0.8022 5.1146 -7.6829 39 1 -0.9229 2.5349 -8.4260 40 1 0.4723 1.1475 -6.6956 41 1 4.5337 3.5997 -3.1607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354726709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:00 Heat of formation + Delta-G solvation = 31.729194 kcal Electronic energy + Delta-G solvation = -26334.319905 eV Core-core repulsion = 22517.201329 eV Total energy + Delta-G solvation = -3817.118576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.90059 -41.41461 -39.67166 -37.63269 -35.65850 -33.25008 -32.36678 -31.60836 -30.60372 -28.93068 -28.83198 -26.07869 -24.96498 -23.32020 -22.80223 -20.86586 -20.38409 -20.31724 -19.76103 -18.36571 -17.55096 -16.98710 -16.43804 -15.69711 -15.49380 -15.33209 -14.55552 -14.26226 -14.22552 -14.06453 -13.89389 -13.82659 -13.59889 -13.26440 -12.92472 -12.45050 -12.24653 -12.17220 -12.08825 -12.02445 -11.89525 -11.42244 -11.33810 -11.10397 -10.82099 -10.51272 -10.43754 -10.25538 -10.00210 -9.41447 -9.02737 -8.80036 -8.69365 -8.22880 -8.14601 -7.96020 -6.44248 -4.00066 0.76643 1.21447 2.27875 2.84173 2.99001 3.00483 3.13758 3.20185 3.31517 3.83621 3.99334 4.12862 4.55790 4.81216 4.93478 4.94747 5.11712 5.18910 5.22342 5.32971 5.49128 5.51592 5.75921 5.83447 5.89045 5.92624 6.03308 6.06150 6.17926 6.20767 6.27024 6.32313 6.48259 6.51838 6.71861 6.76483 6.81669 6.91768 7.15612 7.19538 7.41957 7.45144 7.63577 7.84810 8.29708 8.94554 9.17543 9.72982 10.40109 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.003616 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.331286 B = 7741.558791 C = 8565.787679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.107 3.893 4 N -0.420 5.420 5 C -0.289 4.289 6 H 0.110 0.890 7 C 0.024 3.976 8 N -0.864 5.864 9 Si 0.935 3.065 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.459 3.541 14 O -0.589 6.589 15 C -0.052 4.052 16 C -0.104 4.104 17 C -0.097 4.097 18 C 0.077 3.923 19 N -0.396 5.396 20 C -0.003 4.003 21 C -0.200 4.200 22 C -0.198 4.198 23 C -0.010 4.010 24 C 0.094 3.906 25 F -0.133 7.133 26 C -0.105 4.105 27 H 0.056 0.944 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.030 0.970 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.040 0.960 34 H 0.269 0.731 35 H 0.159 0.841 36 H 0.139 0.861 37 H 0.160 0.840 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.292 2.131 -9.494 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C -0.016 4.016 4 N -0.135 5.135 5 C -0.417 4.417 6 H 0.127 0.873 7 C -0.178 4.178 8 N -0.505 5.505 9 Si 0.761 3.239 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.248 3.752 14 O -0.476 6.476 15 C -0.056 4.056 16 C -0.124 4.124 17 C -0.116 4.116 18 C -0.015 4.015 19 N -0.069 5.069 20 C -0.131 4.131 21 C -0.224 4.224 22 C -0.222 4.222 23 C -0.137 4.137 24 C 0.073 3.927 25 F -0.111 7.111 26 C -0.125 4.125 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.176 0.824 36 H 0.156 0.844 37 H 0.178 0.822 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.180 0.820 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.629 1.991 -9.110 12.048 hybrid contribution 0.283 0.168 0.506 0.604 sum -7.346 2.159 -8.603 11.517 Atomic orbital electron populations 1.21640 0.97173 1.00183 1.00798 1.22118 0.93919 0.98118 1.02249 1.22190 0.79522 0.97367 1.02497 1.43839 1.06431 1.57046 1.06186 1.19997 0.92477 1.44396 0.84782 0.87256 1.25369 0.96499 0.96389 0.99551 1.70107 1.09727 1.45653 1.24974 0.85708 0.79981 0.77960 0.80265 1.19130 1.20457 1.20552 1.17562 0.87537 0.87481 0.82607 1.90651 1.14437 1.58864 1.83601 1.20254 0.94518 0.94534 0.96263 1.22048 0.93082 1.00653 0.96572 1.20868 1.00566 0.96670 0.93491 1.17753 0.91551 1.00676 0.91558 1.41335 1.38254 1.07571 1.19728 1.21976 1.03468 0.87152 1.00512 1.20900 1.05678 0.97241 0.98575 1.20905 1.05759 0.93718 1.01852 1.21963 1.03122 0.96120 0.92524 1.17348 0.93423 0.89966 0.91967 1.91504 1.90974 1.57972 1.70671 1.21068 1.00267 0.98152 0.93014 0.92484 0.94426 0.93933 0.95155 0.87226 0.86239 0.94181 0.92022 0.82374 0.84352 0.82239 0.84480 0.84460 0.82001 0.83447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.87 37.16 0.37 -1.78 16 2 C -0.13 -2.38 4.67 -26.73 -0.12 -2.50 16 3 C 0.11 2.20 4.16 -4.04 -0.02 2.18 16 4 N -0.42 -10.01 2.64 -115.99 -0.31 -10.32 16 5 C -0.29 -7.39 9.49 -15.00 -0.14 -7.53 16 6 H 0.11 2.98 7.19 -52.49 -0.38 2.60 16 7 C 0.02 0.57 5.33 -17.45 -0.09 0.48 16 8 N -0.86 -19.64 7.19 55.50 0.40 -19.24 16 9 Si 0.93 19.04 29.56 -169.99 -5.03 14.02 16 10 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 13 C 0.46 10.87 7.22 -12.47 -0.09 10.78 16 14 O -0.59 -16.00 16.58 5.26 0.09 -15.91 16 15 C -0.05 -0.99 5.13 -104.96 -0.54 -1.53 16 16 C -0.10 -1.70 7.36 -39.20 -0.29 -1.99 16 17 C -0.10 -1.36 9.63 -39.48 -0.38 -1.74 16 18 C 0.08 1.15 5.98 -83.51 -0.50 0.65 16 19 N -0.40 -5.60 2.81 -60.83 -0.17 -5.77 16 20 C 0.00 -0.05 10.36 -16.63 -0.17 -0.22 16 21 C -0.20 -2.44 10.86 -39.76 -0.43 -2.87 16 22 C -0.20 -2.35 10.86 -39.76 -0.43 -2.78 16 23 C -0.01 -0.13 11.10 -16.63 -0.18 -0.31 16 24 C 0.09 1.51 7.19 -39.33 -0.28 1.23 16 25 F -0.13 -2.13 16.25 2.25 0.04 -2.09 16 26 C -0.10 -1.84 9.65 -39.13 -0.38 -2.22 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.56 6.33 -51.93 -0.33 0.23 16 31 H 0.11 2.39 5.88 -51.93 -0.31 2.08 16 32 H 0.12 2.68 5.79 -51.93 -0.30 2.38 16 33 H 0.04 0.75 4.92 -51.93 -0.26 0.49 16 34 H 0.27 5.81 8.31 -40.82 -0.34 5.47 16 35 H 0.16 2.56 3.67 -52.48 -0.19 2.37 16 36 H 0.14 1.61 8.05 -52.49 -0.42 1.19 16 37 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.15 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -27.49 340.07 -8.24 -35.74 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.70 Total: 8.59 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -3.69 Total: -10.15 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.08 Total: -35.32 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.09 Total: -15.91 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.49 -8.24 -35.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354726709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.465 kcal (2) G-P(sol) polarization free energy of solvation -27.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds