Wall clock time and date at job start Tue Mar 31 2020 11:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46786 * 2 1 4 4 N 1.46497 * 109.46980 * 185.72307 * 3 2 1 5 5 C 1.36886 * 119.99997 * 278.65893 * 4 3 2 6 6 H 1.08001 * 119.99879 * 180.52650 * 5 4 3 7 7 C 1.39029 * 120.00171 * 0.52229 * 5 4 3 8 8 N 1.31380 * 119.99788 * 9.82793 * 7 5 4 9 9 Si 1.86796 * 120.00277 * 189.82864 * 7 5 4 10 10 H 1.48503 * 109.47240 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47318 * 119.99794 * 9 7 5 12 12 H 1.48495 * 109.47223 * 240.00127 * 9 7 5 13 13 C 1.34783 * 120.00133 * 98.66115 * 4 3 2 14 14 O 1.21615 * 119.99837 * 186.38906 * 13 4 3 15 15 C 1.47535 * 119.99870 * 6.38598 * 13 4 3 16 16 C 1.39783 * 120.07712 * 314.99709 * 15 13 4 17 17 C 1.37703 * 119.96027 * 180.25740 * 16 15 13 18 18 C 1.39026 * 120.11039 * 359.44282 * 17 16 15 19 19 N 1.39892 * 119.92267 * 180.28254 * 18 17 16 20 20 C 1.36617 * 125.67302 * 129.96961 * 19 18 17 21 21 C 1.34824 * 108.19342 * 179.82535 * 20 19 18 22 22 C 1.40970 * 107.47888 * 0.43049 * 21 20 19 23 23 C 1.34828 * 107.47772 * 359.72699 * 22 21 20 24 24 C 1.39251 * 120.15041 * 0.55860 * 18 17 16 25 25 F 1.35107 * 119.97770 * 179.70211 * 24 18 17 26 26 C 1.37904 * 120.04289 * 359.72282 * 24 18 17 27 27 H 1.08998 * 109.47445 * 299.99636 * 1 2 3 28 28 H 1.09000 * 109.47621 * 59.99985 * 1 2 3 29 29 H 1.09002 * 109.47217 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47445 * 240.00363 * 2 1 3 31 31 H 1.08995 * 109.47607 * 119.99510 * 2 1 3 32 32 H 1.08996 * 109.47177 * 65.72425 * 3 2 1 33 33 H 1.08998 * 109.46992 * 305.72016 * 3 2 1 34 34 H 0.96999 * 120.00008 * 180.02562 * 8 7 5 35 35 H 1.08003 * 120.01817 * 359.97438 * 16 15 13 36 36 H 1.07999 * 119.94622 * 179.72306 * 17 16 15 37 37 H 1.07998 * 125.90134 * 359.96748 * 20 19 18 38 38 H 1.08004 * 126.26048 * 180.12790 * 21 20 19 39 39 H 1.08000 * 126.26259 * 179.69800 * 22 21 20 40 40 H 1.07996 * 125.90034 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.05594 * 180.02562 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4984 1.4449 -0.1377 5 6 4.2897 1.2287 0.9581 6 1 5.3650 1.2389 0.8581 7 6 3.7092 0.9961 2.1998 8 7 2.4146 0.7916 2.2917 9 14 4.7697 0.9742 3.7374 10 1 6.1847 1.2301 3.3664 11 1 4.3055 2.0290 4.6739 12 1 4.6619 -0.3532 4.3942 13 6 4.0611 1.6600 -1.3434 14 8 5.2641 1.5473 -1.4818 15 6 3.2177 2.0321 -2.4953 16 6 2.0228 1.3486 -2.7384 17 6 1.2401 1.6944 -3.8173 18 6 1.6303 2.7300 -4.6588 19 7 0.8292 3.0819 -5.7502 20 6 0.4179 4.3469 -6.0616 21 6 -0.3318 4.2824 -7.1804 22 6 -0.3951 2.9291 -7.5702 23 6 0.3232 2.2169 -6.6788 24 6 2.8198 3.4140 -4.4209 25 9 3.1987 4.4158 -5.2444 26 6 3.6113 3.0691 -3.3457 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.7627 1.9259 0.9368 33 1 1.5953 1.9851 -0.8343 34 1 2.0095 0.6296 3.1581 35 1 1.7160 0.5468 -2.0831 36 1 0.3192 1.1632 -4.0075 37 1 0.6545 5.2439 -5.5086 38 1 -0.8022 5.1146 -7.6829 39 1 -0.9229 2.5349 -8.4260 40 1 0.4723 1.1475 -6.6956 41 1 4.5337 3.5997 -3.1607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354726709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:59 Heat of formation + Delta-G solvation = 20.113587 kcal Electronic energy + Delta-G solvation = -26334.823596 eV Core-core repulsion = 22517.201329 eV Total energy + Delta-G solvation = -3817.622267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.133 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.18545 -42.43733 -41.22880 -39.10154 -37.45547 -34.60184 -33.84335 -33.33313 -31.90198 -30.21290 -29.77233 -27.70263 -26.54321 -24.71655 -24.07739 -22.37165 -21.64652 -21.33858 -21.09155 -19.43149 -19.16156 -18.71565 -17.74608 -17.24352 -16.90087 -16.80876 -16.08023 -15.83857 -15.61496 -15.40579 -15.20568 -15.02009 -14.87226 -14.58536 -14.26373 -13.77886 -13.65362 -13.48072 -13.39027 -13.20794 -13.03525 -12.97668 -12.70917 -12.66456 -12.37971 -12.14805 -12.08059 -11.86751 -11.56734 -10.73751 -10.71368 -10.47409 -10.09663 -9.73901 -9.31402 -9.17172 -8.24729 -5.91504 -0.53500 -0.07830 1.22485 1.36983 1.43672 1.55000 1.77504 1.82103 2.10084 2.20061 2.40069 2.73737 3.02362 3.06935 3.56140 3.66218 3.90305 3.92129 3.99588 4.30713 4.36780 4.44479 4.50801 4.57132 4.63886 4.67418 4.74230 4.76794 4.89321 4.92898 5.11196 5.16111 5.29856 5.32329 5.34011 5.36259 5.45072 5.49494 5.68562 5.97231 5.99742 6.06178 6.21412 6.42605 6.47844 7.09109 7.36367 7.91208 8.56559 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.003616 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.331286 B = 7741.558791 C = 8565.787679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.119 4.119 3 C 0.111 3.889 4 N -0.427 5.427 5 C -0.338 4.338 6 H 0.076 0.924 7 C 0.005 3.995 8 N -0.857 5.857 9 Si 0.991 3.009 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.270 1.270 13 C 0.446 3.554 14 O -0.641 6.641 15 C -0.074 4.074 16 C -0.095 4.095 17 C -0.077 4.077 18 C 0.095 3.905 19 N -0.410 5.410 20 C -0.029 4.029 21 C -0.198 4.198 22 C -0.200 4.200 23 C -0.020 4.020 24 C 0.090 3.910 25 F -0.133 7.133 26 C -0.109 4.109 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.276 0.724 35 H 0.162 0.838 36 H 0.177 0.823 37 H 0.164 0.836 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.185 0.815 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.493 1.732 -10.805 15.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.157 4.157 3 C -0.011 4.011 4 N -0.141 5.141 5 C -0.466 4.466 6 H 0.094 0.906 7 C -0.198 4.198 8 N -0.496 5.496 9 Si 0.815 3.185 10 H -0.207 1.207 11 H -0.193 1.193 12 H -0.195 1.195 13 C 0.237 3.763 14 O -0.531 6.531 15 C -0.078 4.078 16 C -0.114 4.114 17 C -0.096 4.096 18 C 0.003 3.997 19 N -0.084 5.084 20 C -0.155 4.155 21 C -0.222 4.222 22 C -0.224 4.224 23 C -0.146 4.146 24 C 0.070 3.930 25 F -0.112 7.112 26 C -0.129 4.129 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.179 0.821 36 H 0.194 0.806 37 H 0.181 0.819 38 H 0.175 0.825 39 H 0.179 0.821 40 H 0.202 0.798 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.906 1.598 -10.433 15.177 hybrid contribution 1.182 0.339 0.773 1.452 sum -9.724 1.936 -9.660 13.842 Atomic orbital electron populations 1.21563 0.93971 1.01644 1.01697 1.21955 0.96573 0.96341 1.00829 1.22232 0.77830 0.98711 1.02282 1.44027 1.07620 1.56637 1.05846 1.19801 0.91604 1.48540 0.86636 0.90584 1.25933 0.97778 0.95207 1.00873 1.70201 1.09907 1.43642 1.25829 0.84904 0.77831 0.78461 0.77321 1.20677 1.19278 1.19493 1.18252 0.87519 0.86851 0.83684 1.90586 1.16847 1.60986 1.84718 1.19884 0.95763 0.96599 0.95574 1.22010 0.91965 1.00077 0.97349 1.21121 1.00963 0.95886 0.91654 1.17849 0.90648 0.99684 0.91559 1.41456 1.38745 1.08235 1.19917 1.22258 1.04496 0.87243 1.01483 1.21276 1.04759 0.98277 0.97903 1.21299 1.05311 0.93487 1.02270 1.22476 1.02792 0.97167 0.92131 1.17296 0.93816 0.90324 0.91602 1.91501 1.91087 1.58042 1.70524 1.20949 1.00323 0.98117 0.93552 0.93060 0.92023 0.92205 0.94925 0.90315 0.88160 0.92098 0.91314 0.82054 0.80614 0.81897 0.82506 0.82067 0.79807 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.87 71.98 0.71 -2.93 16 2 C -0.12 -4.39 4.67 30.59 0.14 -4.25 16 3 C 0.11 4.59 4.16 86.38 0.36 4.95 16 4 N -0.43 -21.29 2.64 -639.14 -1.69 -22.98 16 5 C -0.34 -18.30 9.49 84.09 0.80 -17.50 16 6 H 0.08 4.51 7.19 -2.91 -0.02 4.49 16 7 C 0.01 0.25 5.33 84.95 0.45 0.70 16 8 N -0.86 -39.10 7.19 21.68 0.16 -38.94 16 9 Si 0.99 39.74 29.56 68.60 2.03 41.76 16 10 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 12 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 13 C 0.45 22.31 7.22 86.69 0.63 22.94 16 14 O -0.64 -37.41 16.58 -4.08 -0.07 -37.47 16 15 C -0.07 -2.90 5.13 -20.08 -0.10 -3.01 16 16 C -0.09 -2.93 7.36 22.52 0.17 -2.77 16 17 C -0.08 -1.91 9.63 22.33 0.22 -1.70 16 18 C 0.10 2.61 5.98 38.29 0.23 2.84 16 19 N -0.41 -10.29 2.81 -346.38 -0.97 -11.26 16 20 C -0.03 -0.69 10.36 83.16 0.86 0.17 16 21 C -0.20 -4.18 10.86 22.16 0.24 -3.94 16 22 C -0.20 -3.95 10.86 22.16 0.24 -3.71 16 23 C -0.02 -0.42 11.10 83.16 0.92 0.50 16 24 C 0.09 2.84 7.19 22.43 0.16 3.01 16 25 F -0.13 -4.19 16.25 44.97 0.73 -3.45 16 26 C -0.11 -3.93 9.65 22.56 0.22 -3.71 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.03 1.18 6.33 -2.39 -0.02 1.16 16 31 H 0.08 3.43 5.88 -2.39 -0.01 3.41 16 32 H 0.10 4.53 5.79 -2.39 -0.01 4.52 16 33 H 0.06 2.22 4.92 -2.39 -0.01 2.21 16 34 H 0.28 11.71 8.31 -92.71 -0.77 10.94 16 35 H 0.16 4.91 3.67 -2.91 -0.01 4.90 16 36 H 0.18 3.11 8.05 -2.91 -0.02 3.09 16 37 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 38 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.18 2.93 8.06 -2.91 -0.02 2.91 16 41 H 0.14 5.11 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -63.08 340.07 7.50 -55.59 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 1.07 Total: 25.17 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 6.24 Total: -8.41 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -2.50 Total: -73.18 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.07 Total: -37.47 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.73 Total: -3.45 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.76 kcal Total: -63.08 7.50 -55.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354726709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.703 kcal (2) G-P(sol) polarization free energy of solvation -63.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds