Wall clock time and date at job start Tue Mar 31 2020 10:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38298 * 119.96936 * 2 1 4 4 C 1.38249 * 120.13311 * 180.02562 * 3 2 1 5 5 C 1.38151 * 120.06623 * 359.72733 * 4 3 2 6 6 C 1.38806 * 119.92917 * 0.54542 * 5 4 3 7 7 N 1.40196 * 120.06224 * 179.72636 * 6 5 4 8 8 C 1.37862 * 126.53711 * 64.89059 * 7 6 5 9 9 C 1.34398 * 106.94584 * 180.22338 * 8 7 6 10 10 N 1.34374 * 108.40612 * 359.77169 * 9 8 7 11 11 C 1.31271 * 109.36245 * 0.02562 * 10 9 8 12 12 S 1.76193 * 125.82380 * 179.97438 * 11 10 9 13 13 C 1.81002 * 100.00049 * 0.02562 * 12 11 10 14 14 C 1.53000 * 109.47004 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47282 * 89.99593 * 20 18 16 22 22 H 1.48498 * 109.47211 * 210.00040 * 20 18 16 23 23 H 1.48506 * 109.46856 * 330.00220 * 20 18 16 24 24 C 1.38102 * 119.96521 * 180.02562 * 2 1 3 25 25 C 1.50700 * 120.03489 * 359.95856 * 24 2 1 26 26 H 1.09001 * 109.47135 * 269.97394 * 1 2 3 27 27 H 1.09004 * 109.47220 * 29.97632 * 1 2 3 28 28 H 1.09004 * 109.47566 * 149.97672 * 1 2 3 29 29 H 1.08000 * 119.93099 * 0.04261 * 3 2 1 30 30 H 1.07996 * 119.97093 * 179.97438 * 4 3 2 31 31 H 1.07995 * 120.03600 * 180.27772 * 5 4 3 32 32 H 1.07995 * 126.52505 * 359.97438 * 8 7 6 33 33 H 1.08002 * 125.79160 * 179.77683 * 9 8 7 34 34 H 1.09002 * 109.47115 * 60.00094 * 13 12 11 35 35 H 1.09001 * 109.46925 * 300.00251 * 13 12 11 36 36 H 1.09001 * 109.47194 * 299.99731 * 14 13 12 37 37 H 1.08992 * 109.47399 * 59.99903 * 14 13 12 38 38 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 39 39 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 40 40 H 0.97000 * 119.99425 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.47157 * 270.02032 * 25 24 2 42 42 H 1.09001 * 109.46992 * 30.01856 * 25 24 2 43 43 H 1.08999 * 109.47777 * 150.01832 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2020 -0.0005 5 6 4.2759 0.0084 0.0046 6 6 3.5852 -1.1956 -0.0011 7 7 4.2883 -2.4086 -0.0017 8 6 5.1028 -2.8856 1.0031 9 6 5.5778 -4.0736 0.5915 10 7 5.0736 -4.3331 -0.6267 11 6 4.2947 -3.3428 -0.9954 12 16 3.4130 -3.2359 -2.5171 13 6 3.9155 -4.7975 -3.2820 14 6 3.2540 -4.9287 -4.6553 15 6 3.6782 -6.2491 -5.3016 16 6 3.0262 -6.3787 -6.6540 17 1 2.3740 -5.5977 -7.0162 18 6 3.2621 -7.4944 -7.4290 19 7 4.0567 -8.4452 -6.9882 20 14 2.4545 -7.6548 -9.1057 21 1 3.3366 -7.0559 -10.1395 22 1 2.2347 -9.0907 -9.4140 23 1 1.1500 -6.9451 -9.0967 24 6 2.1968 -1.1964 -0.0005 25 6 1.4433 -2.5015 -0.0002 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6562 2.1324 0.0007 30 1 4.1171 2.1391 -0.0010 31 1 5.3558 0.0121 0.0087 32 1 5.3212 -2.3958 1.9405 33 1 6.2505 -4.7112 1.1459 34 1 3.6060 -5.6286 -2.6483 35 1 4.9992 -4.8130 -3.3981 36 1 2.1702 -4.9130 -4.5396 37 1 3.5638 -4.0977 -5.2888 38 1 4.7620 -6.2652 -5.4174 39 1 3.3681 -7.0800 -4.6679 40 1 4.2230 -9.2299 -7.5336 41 1 1.2619 -2.8161 1.0276 42 1 0.4907 -2.3712 -0.5137 43 1 2.0321 -3.2613 -0.5141 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355785834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:53 Heat of formation + Delta-G solvation = 69.360483 kcal Electronic energy + Delta-G solvation = -22986.894769 eV Core-core repulsion = 19737.621183 eV Total energy + Delta-G solvation = -3249.273585 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.17346 -39.72657 -34.65960 -34.36849 -33.76008 -32.01247 -30.75709 -29.52447 -27.81896 -27.41477 -26.73043 -23.60171 -23.15533 -21.70903 -21.39662 -20.89146 -20.02947 -18.29454 -16.63762 -16.45423 -16.21656 -15.67923 -14.86571 -14.72555 -14.60495 -14.44982 -14.33794 -14.09426 -13.84417 -13.44850 -13.37718 -13.00902 -12.98673 -12.48176 -12.23629 -12.14768 -11.81025 -11.76733 -11.64038 -11.32014 -11.04513 -10.86984 -10.56707 -10.32087 -10.15881 -9.99028 -9.79690 -9.33218 -9.29236 -9.08775 -8.97423 -8.87246 -8.33956 -7.27231 -5.98658 -4.01534 0.71823 0.94682 1.40540 1.85309 2.47229 2.79695 3.02929 3.24051 3.33731 3.39822 3.43248 4.39087 4.45765 4.47384 4.58154 4.66807 4.78696 4.94717 5.14299 5.20069 5.23637 5.34523 5.37084 5.41397 5.43184 5.49490 5.55020 5.60620 5.68660 5.70010 5.88682 5.98780 6.04935 6.10575 6.21104 6.24784 6.45301 6.53980 6.62030 6.72211 7.01240 7.04654 7.67426 7.79451 7.86073 8.00392 8.41015 9.04919 9.62399 11.12606 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017281 B = 0.002858 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.917481 B = 9795.286455 C =10791.191647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.077 4.077 3 C -0.106 4.106 4 C -0.113 4.113 5 C -0.107 4.107 6 C 0.112 3.888 7 N -0.406 5.406 8 C -0.050 4.050 9 C -0.014 4.014 10 N -0.482 5.482 11 C 0.209 3.791 12 S -0.037 6.037 13 C -0.086 4.086 14 C -0.098 4.098 15 C 0.030 3.970 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.060 4.060 25 C -0.134 4.134 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 19.893 19.854 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.078 4.078 3 C -0.124 4.124 4 C -0.131 4.131 5 C -0.126 4.126 6 C 0.022 3.978 7 N -0.089 5.089 8 C -0.183 4.183 9 C -0.163 4.163 10 N -0.203 5.203 11 C -0.160 4.160 12 S 0.196 5.804 13 C -0.234 4.234 14 C -0.137 4.137 15 C -0.009 4.009 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.062 4.062 25 C -0.191 4.191 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.192 0.808 33 H 0.192 0.808 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.751 19.953 18.937 27.763 hybrid contribution 0.607 -0.380 0.242 0.756 sum -3.144 19.573 19.179 27.583 Atomic orbital electron populations 1.20889 0.90427 1.03543 1.02609 1.19697 0.96508 0.91759 0.99796 1.21162 0.94200 0.97693 0.99353 1.20989 0.94225 0.97458 1.00461 1.21117 1.00301 0.91000 1.00171 1.17482 0.90345 0.83897 1.06103 1.42914 1.36627 1.14757 1.14587 1.22827 1.00877 0.98944 0.95609 1.22335 1.03850 0.96314 0.93769 1.70893 1.12056 1.23827 1.13533 1.25533 1.04411 0.89015 0.97040 1.85645 1.56864 1.31933 1.06005 1.23833 1.04999 0.93933 1.00685 1.21542 0.99393 1.02051 0.90754 1.19079 0.97021 0.89873 0.94971 1.21212 1.28459 1.04471 1.01844 0.92562 1.25022 0.95303 0.95833 0.98261 1.69972 1.36789 1.08929 1.37635 0.86582 0.79818 0.77190 0.84343 1.20650 1.21221 1.19836 1.19816 0.91539 0.96347 0.98473 1.21161 1.01054 0.94241 1.02620 0.90901 0.91171 0.90551 0.85342 0.85095 0.85400 0.80753 0.80850 0.89083 0.89151 0.92335 0.92355 0.96201 0.96178 0.92951 0.91107 0.90119 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.60 36.00 0.35 -0.46 16 2 C -0.08 -0.71 5.88 -104.65 -0.62 -1.32 16 3 C -0.11 -0.85 9.70 -39.56 -0.38 -1.23 16 4 C -0.11 -0.92 10.04 -39.61 -0.40 -1.32 16 5 C -0.11 -1.09 9.92 -39.40 -0.39 -1.48 16 6 C 0.11 1.36 5.47 -83.60 -0.46 0.90 16 7 N -0.41 -5.53 2.45 -60.74 -0.15 -5.68 16 8 C -0.05 -0.60 11.51 -16.19 -0.19 -0.78 16 9 C -0.01 -0.18 11.84 -17.80 -0.21 -0.40 16 10 N -0.48 -8.22 10.60 -13.38 -0.14 -8.36 16 11 C 0.21 3.37 6.47 -88.48 -0.57 2.80 16 12 S -0.04 -0.61 19.93 -107.50 -2.14 -2.75 16 13 C -0.09 -1.60 5.20 37.16 0.19 -1.41 16 14 C -0.10 -2.04 5.16 -26.73 -0.14 -2.18 16 15 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 16 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 20 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.06 -0.68 5.74 -104.45 -0.60 -1.28 16 25 C -0.13 -1.50 9.13 36.01 0.33 -1.17 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 28 H 0.08 0.53 5.94 -51.93 -0.31 0.23 16 29 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.18 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 35 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.78 5.95 -51.93 -0.31 0.47 16 43 H 0.08 1.14 4.27 -51.93 -0.22 0.92 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -32.61 368.04 -11.10 -43.71 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.30 Total: -0.58 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -3.63 Total: -22.26 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.45 Total: -40.40 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -2.14 Total: -2.75 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.61 -11.10 -43.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355785834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.073 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds