Wall clock time and date at job start Tue Mar 31 2020 10:48:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38298 * 119.96936 * 2 1
4 4 C 1.38249 * 120.13311 * 180.02562 * 3 2 1
5 5 C 1.38151 * 120.06623 * 359.72733 * 4 3 2
6 6 C 1.38806 * 119.92917 * 0.54542 * 5 4 3
7 7 N 1.40196 * 120.06224 * 179.72636 * 6 5 4
8 8 C 1.37862 * 126.53711 * 64.89059 * 7 6 5
9 9 C 1.34398 * 106.94584 * 180.22338 * 8 7 6
10 10 N 1.34374 * 108.40612 * 359.77169 * 9 8 7
11 11 C 1.31271 * 109.36245 * 0.02562 * 10 9 8
12 12 S 1.76193 * 125.82380 * 179.97438 * 11 10 9
13 13 C 1.81002 * 100.00049 * 0.02562 * 12 11 10
14 14 C 1.53000 * 109.47004 * 180.02562 * 13 12 11
15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12
16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13
17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14
18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14
19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 15
20 20 Si 1.86800 * 120.00432 * 180.02562 * 18 16 15
21 21 H 1.48508 * 109.47282 * 89.99593 * 20 18 16
22 22 H 1.48498 * 109.47211 * 210.00040 * 20 18 16
23 23 H 1.48506 * 109.46856 * 330.00220 * 20 18 16
24 24 C 1.38102 * 119.96521 * 180.02562 * 2 1 3
25 25 C 1.50700 * 120.03489 * 359.95856 * 24 2 1
26 26 H 1.09001 * 109.47135 * 269.97394 * 1 2 3
27 27 H 1.09004 * 109.47220 * 29.97632 * 1 2 3
28 28 H 1.09004 * 109.47566 * 149.97672 * 1 2 3
29 29 H 1.08000 * 119.93099 * 0.04261 * 3 2 1
30 30 H 1.07996 * 119.97093 * 179.97438 * 4 3 2
31 31 H 1.07995 * 120.03600 * 180.27772 * 5 4 3
32 32 H 1.07995 * 126.52505 * 359.97438 * 8 7 6
33 33 H 1.08002 * 125.79160 * 179.77683 * 9 8 7
34 34 H 1.09002 * 109.47115 * 60.00094 * 13 12 11
35 35 H 1.09001 * 109.46925 * 300.00251 * 13 12 11
36 36 H 1.09001 * 109.47194 * 299.99731 * 14 13 12
37 37 H 1.08992 * 109.47399 * 59.99903 * 14 13 12
38 38 H 1.09001 * 109.47109 * 299.99380 * 15 14 13
39 39 H 1.09002 * 109.47508 * 59.99571 * 15 14 13
40 40 H 0.97000 * 119.99425 * 180.02562 * 19 18 16
41 41 H 1.09004 * 109.47157 * 270.02032 * 25 24 2
42 42 H 1.09001 * 109.46992 * 30.01856 * 25 24 2
43 43 H 1.08999 * 109.47777 * 150.01832 * 25 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1978 1.1981 0.0000
4 6 3.5803 1.2020 -0.0005
5 6 4.2759 0.0084 0.0046
6 6 3.5852 -1.1956 -0.0011
7 7 4.2883 -2.4086 -0.0017
8 6 5.1028 -2.8856 1.0031
9 6 5.5778 -4.0736 0.5915
10 7 5.0736 -4.3331 -0.6267
11 6 4.2947 -3.3428 -0.9954
12 16 3.4130 -3.2359 -2.5171
13 6 3.9155 -4.7975 -3.2820
14 6 3.2540 -4.9287 -4.6553
15 6 3.6782 -6.2491 -5.3016
16 6 3.0262 -6.3787 -6.6540
17 1 2.3740 -5.5977 -7.0162
18 6 3.2621 -7.4944 -7.4290
19 7 4.0567 -8.4452 -6.9882
20 14 2.4545 -7.6548 -9.1057
21 1 3.3366 -7.0559 -10.1395
22 1 2.2347 -9.0907 -9.4140
23 1 1.1500 -6.9451 -9.0967
24 6 2.1968 -1.1964 -0.0005
25 6 1.4433 -2.5015 -0.0002
26 1 -0.3633 -0.0005 1.0277
27 1 -0.3634 0.8902 -0.5135
28 1 -0.3634 -0.8898 -0.5142
29 1 1.6562 2.1324 0.0007
30 1 4.1171 2.1391 -0.0010
31 1 5.3558 0.0121 0.0087
32 1 5.3212 -2.3958 1.9405
33 1 6.2505 -4.7112 1.1459
34 1 3.6060 -5.6286 -2.6483
35 1 4.9992 -4.8130 -3.3981
36 1 2.1702 -4.9130 -4.5396
37 1 3.5638 -4.0977 -5.2888
38 1 4.7620 -6.2652 -5.4174
39 1 3.3681 -7.0800 -4.6679
40 1 4.2230 -9.2299 -7.5336
41 1 1.2619 -2.8161 1.0276
42 1 0.4907 -2.3712 -0.5137
43 1 2.0321 -3.2613 -0.5141
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000355785834.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:48:53
Heat of formation + Delta-G solvation = 54.058274 kcal
Electronic energy + Delta-G solvation = -22987.558322 eV
Core-core repulsion = 19737.621183 eV
Total energy + Delta-G solvation = -3249.937139 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 316.130 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-43.19228 -40.47400 -36.42139 -35.44343 -34.46757 -34.06605 -31.63190 -30.55788
-29.41374 -28.51361 -27.41956 -25.46827 -24.17330 -22.78947 -22.52823 -21.86545
-21.45023 -19.23977 -18.50304 -17.46124 -17.19766 -16.76312 -16.51711 -16.29776
-15.64381 -15.54985 -15.37416 -15.00167 -14.96689 -14.46712 -14.37321 -14.04939
-13.89779 -13.67816 -13.61746 -13.54930 -12.93530 -12.88324 -12.80010 -12.75746
-12.40118 -12.38215 -12.02058 -11.82012 -11.70479 -11.37944 -11.27353 -11.13427
-11.02874 -10.56048 -10.39280 -9.70142 -9.64530 -8.48603 -8.19837 -6.31736
-0.04926 0.17263 0.25578 0.83095 1.10095 1.41473 1.43224 1.54484
1.80425 1.93739 2.42060 2.54793 3.13538 3.68790 3.73396 3.76036
3.97617 4.01566 4.04379 4.12566 4.24040 4.33937 4.42972 4.51668
4.52375 4.56868 4.62915 4.76710 4.77557 4.83258 4.85997 4.96314
4.99464 5.05372 5.11462 5.29048 5.33060 5.37486 5.48281 5.54173
5.60888 5.65885 5.77236 5.82004 6.12776 6.21001 6.78642 6.84292
7.37616 8.92322
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.017281 B = 0.002858 C = 0.002594
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1619.917481 B = 9795.286455 C =10791.191647
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.082 4.082
3 C -0.101 4.101
4 C -0.108 4.108
5 C -0.116 4.116
6 C 0.081 3.919
7 N -0.398 5.398
8 C -0.031 4.031
9 C -0.036 4.036
10 N -0.520 5.520
11 C 0.180 3.820
12 S -0.011 6.011
13 C -0.081 4.081
14 C -0.082 4.082
15 C 0.033 3.967
16 C -0.543 4.543
17 H 0.064 0.936
18 C -0.001 4.001
19 N -0.934 5.934
20 Si 0.968 3.032
21 H -0.272 1.272
22 H -0.282 1.282
23 H -0.261 1.261
24 C -0.078 4.078
25 C -0.131 4.131
26 H 0.084 0.916
27 H 0.086 0.914
28 H 0.070 0.930
29 H 0.160 0.840
30 H 0.160 0.840
31 H 0.132 0.868
32 H 0.213 0.787
33 H 0.197 0.803
34 H 0.079 0.921
35 H 0.076 0.924
36 H 0.066 0.934
37 H 0.063 0.937
38 H -0.007 1.007
39 H -0.005 1.005
40 H 0.264 0.736
41 H 0.074 0.926
42 H 0.091 0.909
43 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.472 22.913 20.451 31.037
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.082 4.082
3 C -0.119 4.119
4 C -0.126 4.126
5 C -0.135 4.135
6 C -0.009 4.009
7 N -0.080 5.080
8 C -0.164 4.164
9 C -0.185 4.185
10 N -0.242 5.242
11 C -0.189 4.189
12 S 0.221 5.779
13 C -0.230 4.230
14 C -0.121 4.121
15 C -0.006 4.006
16 C -0.581 4.581
17 H 0.083 0.917
18 C -0.199 4.199
19 N -0.574 5.574
20 Si 0.792 3.208
21 H -0.197 1.197
22 H -0.208 1.208
23 H -0.185 1.185
24 C -0.080 4.080
25 C -0.188 4.188
26 H 0.103 0.897
27 H 0.105 0.895
28 H 0.089 0.911
29 H 0.177 0.823
30 H 0.178 0.822
31 H 0.150 0.850
32 H 0.230 0.770
33 H 0.214 0.786
34 H 0.098 0.902
35 H 0.095 0.905
36 H 0.084 0.916
37 H 0.082 0.918
38 H 0.012 0.988
39 H 0.013 0.987
40 H 0.073 0.927
41 H 0.092 0.908
42 H 0.110 0.890
43 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -5.011 22.998 19.538 30.590
hybrid contribution 1.020 -1.210 0.226 1.599
sum -3.991 21.788 19.764 29.686
Atomic orbital electron populations
1.20947 0.88869 1.04087 1.03538 1.20023 0.97749 0.91456 0.98999
1.21573 0.94334 0.98449 0.97558 1.21364 0.94595 0.97790 0.98844
1.21281 1.00675 0.91063 1.00474 1.17810 0.90909 0.83710 1.08472
1.43029 1.36215 1.14843 1.13954 1.23454 0.98795 0.98139 0.96003
1.22829 1.04841 0.97675 0.93143 1.70811 1.12954 1.24989 1.15458
1.25309 1.05622 0.90287 0.97682 1.85255 1.57107 1.29086 1.06405
1.23457 1.03863 0.95951 0.99709 1.21239 0.99816 0.99295 0.91742
1.18946 0.95195 0.91881 0.94624 1.21660 1.28717 1.04917 1.02847
0.91739 1.26019 0.95802 0.95357 1.02736 1.70116 1.38231 1.09615
1.39467 0.85403 0.79178 0.77379 0.78827 1.19733 1.20773 1.18466
1.19923 0.91388 0.96961 0.99712 1.21100 1.01185 0.93917 1.02626
0.89696 0.89518 0.91123 0.82280 0.82213 0.85049 0.77031 0.78609
0.90207 0.90491 0.91565 0.91785 0.98834 0.98693 0.92723 0.90770
0.88997 0.92452
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.29 9.60 71.24 0.68 -0.61 16
2 C -0.08 -1.30 5.88 -19.88 -0.12 -1.41 16
3 C -0.10 -1.26 9.70 22.29 0.22 -1.04 16
4 C -0.11 -1.41 10.04 22.25 0.22 -1.19 16
5 C -0.12 -2.13 9.92 22.39 0.22 -1.91 16
6 C 0.08 1.86 5.47 38.08 0.21 2.07 16
7 N -0.40 -10.70 2.45 -346.08 -0.85 -11.55 16
8 C -0.03 -0.70 11.51 82.87 0.95 0.25 16
9 C -0.04 -0.98 11.84 83.43 0.99 0.01 16
10 N -0.52 -18.31 10.60 -196.24 -2.08 -20.39 16
11 C 0.18 5.93 6.47 179.60 1.16 7.10 16
12 S -0.01 -0.36 19.93 -56.49 -1.13 -1.49 16
13 C -0.08 -3.17 5.20 71.98 0.37 -2.79 16
14 C -0.08 -3.52 5.16 30.59 0.16 -3.36 16
15 C 0.03 1.78 4.97 29.85 0.15 1.93 16
16 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16
17 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16
18 C 0.00 -0.08 5.46 84.65 0.46 0.38 16
19 N -0.93 -58.11 13.29 21.45 0.28 -57.82 16
20 Si 0.97 44.78 29.54 68.60 2.03 46.80 16
21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16
22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16
23 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16
24 C -0.08 -1.67 5.74 -19.75 -0.11 -1.78 16
25 C -0.13 -2.91 9.13 71.24 0.65 -2.26 16
26 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16
27 H 0.09 0.67 8.09 -2.39 -0.02 0.65 16
28 H 0.07 0.86 5.94 -2.38 -0.01 0.85 16
29 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16
30 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16
31 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16
32 H 0.21 3.00 8.06 -2.91 -0.02 2.97 16
33 H 0.20 4.02 8.06 -2.91 -0.02 3.99 16
34 H 0.08 3.25 8.14 -2.39 -0.02 3.24 16
35 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16
36 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16
37 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16
38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16
39 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16
40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16
41 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16
42 H 0.09 1.73 5.95 -2.39 -0.01 1.72 16
43 H 0.06 1.60 4.27 -2.39 -0.01 1.59 16
Total: -1.00 -72.86 368.04 5.71 -67.15
By element:
Atomic # 1 Polarization: 12.16 SS G_CDS: 1.00 Total: 13.16 kcal
Atomic # 6 Polarization: -42.31 SS G_CDS: 6.45 Total: -35.86 kcal
Atomic # 7 Polarization: -87.12 SS G_CDS: -2.64 Total: -89.76 kcal
Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal
Atomic # 16 Polarization: -0.36 SS G_CDS: -1.13 Total: -1.49 kcal
Total: -72.86 5.71 -67.15 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000355785834.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.209 kcal
(2) G-P(sol) polarization free energy of solvation -72.858 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.351 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.151 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.058 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds