Wall clock time and date at job start Tue Mar 31 2020 10:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38298 * 119.96936 * 2 1 4 4 C 1.38249 * 120.13311 * 180.02562 * 3 2 1 5 5 C 1.38151 * 120.06623 * 359.72733 * 4 3 2 6 6 C 1.38806 * 119.92917 * 0.54542 * 5 4 3 7 7 N 1.40196 * 120.06224 * 179.72636 * 6 5 4 8 8 C 1.37862 * 126.53711 * 64.89059 * 7 6 5 9 9 C 1.34398 * 106.94584 * 180.22338 * 8 7 6 10 10 N 1.34374 * 108.40612 * 359.77169 * 9 8 7 11 11 C 1.31271 * 109.36245 * 0.02562 * 10 9 8 12 12 S 1.76193 * 125.82380 * 179.97438 * 11 10 9 13 13 C 1.81002 * 100.00049 * 0.02562 * 12 11 10 14 14 C 1.53000 * 109.47004 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47282 * 89.99593 * 20 18 16 22 22 H 1.48498 * 109.47211 * 210.00040 * 20 18 16 23 23 H 1.48506 * 109.46856 * 330.00220 * 20 18 16 24 24 C 1.38102 * 119.96521 * 180.02562 * 2 1 3 25 25 C 1.50700 * 120.03489 * 359.95856 * 24 2 1 26 26 H 1.09001 * 109.47135 * 269.97394 * 1 2 3 27 27 H 1.09004 * 109.47220 * 29.97632 * 1 2 3 28 28 H 1.09004 * 109.47566 * 149.97672 * 1 2 3 29 29 H 1.08000 * 119.93099 * 0.04261 * 3 2 1 30 30 H 1.07996 * 119.97093 * 179.97438 * 4 3 2 31 31 H 1.07995 * 120.03600 * 180.27772 * 5 4 3 32 32 H 1.07995 * 126.52505 * 359.97438 * 8 7 6 33 33 H 1.08002 * 125.79160 * 179.77683 * 9 8 7 34 34 H 1.09002 * 109.47115 * 60.00094 * 13 12 11 35 35 H 1.09001 * 109.46925 * 300.00251 * 13 12 11 36 36 H 1.09001 * 109.47194 * 299.99731 * 14 13 12 37 37 H 1.08992 * 109.47399 * 59.99903 * 14 13 12 38 38 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 39 39 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 40 40 H 0.97000 * 119.99425 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.47157 * 270.02032 * 25 24 2 42 42 H 1.09001 * 109.46992 * 30.01856 * 25 24 2 43 43 H 1.08999 * 109.47777 * 150.01832 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2020 -0.0005 5 6 4.2759 0.0084 0.0046 6 6 3.5852 -1.1956 -0.0011 7 7 4.2883 -2.4086 -0.0017 8 6 5.1028 -2.8856 1.0031 9 6 5.5778 -4.0736 0.5915 10 7 5.0736 -4.3331 -0.6267 11 6 4.2947 -3.3428 -0.9954 12 16 3.4130 -3.2359 -2.5171 13 6 3.9155 -4.7975 -3.2820 14 6 3.2540 -4.9287 -4.6553 15 6 3.6782 -6.2491 -5.3016 16 6 3.0262 -6.3787 -6.6540 17 1 2.3740 -5.5977 -7.0162 18 6 3.2621 -7.4944 -7.4290 19 7 4.0567 -8.4452 -6.9882 20 14 2.4545 -7.6548 -9.1057 21 1 3.3366 -7.0559 -10.1395 22 1 2.2347 -9.0907 -9.4140 23 1 1.1500 -6.9451 -9.0967 24 6 2.1968 -1.1964 -0.0005 25 6 1.4433 -2.5015 -0.0002 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6562 2.1324 0.0007 30 1 4.1171 2.1391 -0.0010 31 1 5.3558 0.0121 0.0087 32 1 5.3212 -2.3958 1.9405 33 1 6.2505 -4.7112 1.1459 34 1 3.6060 -5.6286 -2.6483 35 1 4.9992 -4.8130 -3.3981 36 1 2.1702 -4.9130 -4.5396 37 1 3.5638 -4.0977 -5.2888 38 1 4.7620 -6.2652 -5.4174 39 1 3.3681 -7.0800 -4.6679 40 1 4.2230 -9.2299 -7.5336 41 1 1.2619 -2.8161 1.0276 42 1 0.4907 -2.3712 -0.5137 43 1 2.0321 -3.2613 -0.5141 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355785834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:53 Heat of formation + Delta-G solvation = 54.058274 kcal Electronic energy + Delta-G solvation = -22987.558322 eV Core-core repulsion = 19737.621183 eV Total energy + Delta-G solvation = -3249.937139 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.19228 -40.47400 -36.42139 -35.44343 -34.46757 -34.06605 -31.63190 -30.55788 -29.41374 -28.51361 -27.41956 -25.46827 -24.17330 -22.78947 -22.52823 -21.86545 -21.45023 -19.23977 -18.50304 -17.46124 -17.19766 -16.76312 -16.51711 -16.29776 -15.64381 -15.54985 -15.37416 -15.00167 -14.96689 -14.46712 -14.37321 -14.04939 -13.89779 -13.67816 -13.61746 -13.54930 -12.93530 -12.88324 -12.80010 -12.75746 -12.40118 -12.38215 -12.02058 -11.82012 -11.70479 -11.37944 -11.27353 -11.13427 -11.02874 -10.56048 -10.39280 -9.70142 -9.64530 -8.48603 -8.19837 -6.31736 -0.04926 0.17263 0.25578 0.83095 1.10095 1.41473 1.43224 1.54484 1.80425 1.93739 2.42060 2.54793 3.13538 3.68790 3.73396 3.76036 3.97617 4.01566 4.04379 4.12566 4.24040 4.33937 4.42972 4.51668 4.52375 4.56868 4.62915 4.76710 4.77557 4.83258 4.85997 4.96314 4.99464 5.05372 5.11462 5.29048 5.33060 5.37486 5.48281 5.54173 5.60888 5.65885 5.77236 5.82004 6.12776 6.21001 6.78642 6.84292 7.37616 8.92322 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017281 B = 0.002858 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.917481 B = 9795.286455 C =10791.191647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.082 4.082 3 C -0.101 4.101 4 C -0.108 4.108 5 C -0.116 4.116 6 C 0.081 3.919 7 N -0.398 5.398 8 C -0.031 4.031 9 C -0.036 4.036 10 N -0.520 5.520 11 C 0.180 3.820 12 S -0.011 6.011 13 C -0.081 4.081 14 C -0.082 4.082 15 C 0.033 3.967 16 C -0.543 4.543 17 H 0.064 0.936 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.261 1.261 24 C -0.078 4.078 25 C -0.131 4.131 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.132 0.868 32 H 0.213 0.787 33 H 0.197 0.803 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.063 0.937 38 H -0.007 1.007 39 H -0.005 1.005 40 H 0.264 0.736 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.472 22.913 20.451 31.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.082 4.082 3 C -0.119 4.119 4 C -0.126 4.126 5 C -0.135 4.135 6 C -0.009 4.009 7 N -0.080 5.080 8 C -0.164 4.164 9 C -0.185 4.185 10 N -0.242 5.242 11 C -0.189 4.189 12 S 0.221 5.779 13 C -0.230 4.230 14 C -0.121 4.121 15 C -0.006 4.006 16 C -0.581 4.581 17 H 0.083 0.917 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.185 1.185 24 C -0.080 4.080 25 C -0.188 4.188 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.177 0.823 30 H 0.178 0.822 31 H 0.150 0.850 32 H 0.230 0.770 33 H 0.214 0.786 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.012 0.988 39 H 0.013 0.987 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.011 22.998 19.538 30.590 hybrid contribution 1.020 -1.210 0.226 1.599 sum -3.991 21.788 19.764 29.686 Atomic orbital electron populations 1.20947 0.88869 1.04087 1.03538 1.20023 0.97749 0.91456 0.98999 1.21573 0.94334 0.98449 0.97558 1.21364 0.94595 0.97790 0.98844 1.21281 1.00675 0.91063 1.00474 1.17810 0.90909 0.83710 1.08472 1.43029 1.36215 1.14843 1.13954 1.23454 0.98795 0.98139 0.96003 1.22829 1.04841 0.97675 0.93143 1.70811 1.12954 1.24989 1.15458 1.25309 1.05622 0.90287 0.97682 1.85255 1.57107 1.29086 1.06405 1.23457 1.03863 0.95951 0.99709 1.21239 0.99816 0.99295 0.91742 1.18946 0.95195 0.91881 0.94624 1.21660 1.28717 1.04917 1.02847 0.91739 1.26019 0.95802 0.95357 1.02736 1.70116 1.38231 1.09615 1.39467 0.85403 0.79178 0.77379 0.78827 1.19733 1.20773 1.18466 1.19923 0.91388 0.96961 0.99712 1.21100 1.01185 0.93917 1.02626 0.89696 0.89518 0.91123 0.82280 0.82213 0.85049 0.77031 0.78609 0.90207 0.90491 0.91565 0.91785 0.98834 0.98693 0.92723 0.90770 0.88997 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.60 71.24 0.68 -0.61 16 2 C -0.08 -1.30 5.88 -19.88 -0.12 -1.41 16 3 C -0.10 -1.26 9.70 22.29 0.22 -1.04 16 4 C -0.11 -1.41 10.04 22.25 0.22 -1.19 16 5 C -0.12 -2.13 9.92 22.39 0.22 -1.91 16 6 C 0.08 1.86 5.47 38.08 0.21 2.07 16 7 N -0.40 -10.70 2.45 -346.08 -0.85 -11.55 16 8 C -0.03 -0.70 11.51 82.87 0.95 0.25 16 9 C -0.04 -0.98 11.84 83.43 0.99 0.01 16 10 N -0.52 -18.31 10.60 -196.24 -2.08 -20.39 16 11 C 0.18 5.93 6.47 179.60 1.16 7.10 16 12 S -0.01 -0.36 19.93 -56.49 -1.13 -1.49 16 13 C -0.08 -3.17 5.20 71.98 0.37 -2.79 16 14 C -0.08 -3.52 5.16 30.59 0.16 -3.36 16 15 C 0.03 1.78 4.97 29.85 0.15 1.93 16 16 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 17 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 18 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 19 N -0.93 -58.11 13.29 21.45 0.28 -57.82 16 20 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 24 C -0.08 -1.67 5.74 -19.75 -0.11 -1.78 16 25 C -0.13 -2.91 9.13 71.24 0.65 -2.26 16 26 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.09 0.67 8.09 -2.39 -0.02 0.65 16 28 H 0.07 0.86 5.94 -2.38 -0.01 0.85 16 29 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 30 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.21 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.20 4.02 8.06 -2.91 -0.02 3.99 16 34 H 0.08 3.25 8.14 -2.39 -0.02 3.24 16 35 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.09 1.73 5.95 -2.39 -0.01 1.72 16 43 H 0.06 1.60 4.27 -2.39 -0.01 1.59 16 Total: -1.00 -72.86 368.04 5.71 -67.15 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.00 Total: 13.16 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 6.45 Total: -35.86 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -2.64 Total: -89.76 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -1.13 Total: -1.49 kcal Total: -72.86 5.71 -67.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355785834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.209 kcal (2) G-P(sol) polarization free energy of solvation -72.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds