Wall clock time and date at job start Tue Mar 31 2020 11:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47481 * 2 1 4 4 N 1.29025 * 124.91824 * 89.99223 * 3 2 1 5 5 C 1.31781 * 117.12497 * 180.02562 * 4 3 2 6 6 C 1.50696 * 122.74891 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.47238 * 275.02076 * 6 5 4 8 8 C 1.46902 * 110.99491 * 293.95608 * 7 6 5 9 9 C 1.46895 * 111.00356 * 170.00154 * 7 6 5 10 10 C 1.50705 * 109.46995 * 190.00230 * 9 7 6 11 11 C 1.38632 * 119.74270 * 269.72266 * 10 9 7 12 12 C 1.37621 * 120.24360 * 179.72209 * 11 10 9 13 13 C 1.40717 * 119.74376 * 0.57397 * 12 11 10 14 14 C 1.41398 * 120.24552 * 179.68253 * 13 12 11 15 15 H 1.07997 * 120.00121 * 204.40450 * 14 13 12 16 16 C 1.39948 * 120.00051 * 24.39945 * 14 13 12 17 17 N 1.30825 * 119.99887 * 17.85874 * 16 14 13 18 18 Si 1.86798 * 120.00139 * 197.86264 * 16 14 13 19 19 H 1.48496 * 109.47266 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47314 * 120.00242 * 18 16 14 21 21 H 1.48504 * 109.46637 * 239.99942 * 18 16 14 22 22 C 1.40719 * 119.51224 * 359.70490 * 13 12 11 23 23 C 1.37618 * 119.74074 * 359.97438 * 22 13 12 24 24 C 1.33634 * 114.49696 * 0.22994 * 5 4 3 25 25 S 1.70974 * 124.91285 * 269.99884 * 3 2 1 26 26 H 1.09001 * 109.46741 * 60.00356 * 1 2 3 27 27 H 1.09003 * 109.46868 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47602 * 300.00499 * 1 2 3 29 29 H 1.08997 * 109.47602 * 239.99501 * 2 1 3 30 30 H 1.09001 * 109.46741 * 119.99644 * 2 1 3 31 31 H 1.09000 * 109.47521 * 155.02326 * 6 5 4 32 32 H 1.08999 * 109.47684 * 35.01844 * 6 5 4 33 33 H 1.09001 * 109.47233 * 60.00130 * 8 7 6 34 34 H 1.09007 * 109.46519 * 179.97438 * 8 7 6 35 35 H 1.08992 * 109.47355 * 299.99362 * 8 7 6 36 36 H 1.09001 * 109.46808 * 309.99700 * 9 7 6 37 37 H 1.08995 * 109.47042 * 70.00002 * 9 7 6 38 38 H 1.07997 * 119.88165 * 359.97438 * 11 10 9 39 39 H 1.08000 * 120.12614 * 180.28072 * 12 11 10 40 40 H 0.97000 * 120.00350 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.12338 * 179.97438 * 22 13 12 42 42 H 1.08000 * 119.86795 * 179.97438 * 23 22 13 43 43 H 1.08001 * 126.03404 * 179.77324 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7133 3.3483 0.8793 6 6 3.0391 4.2720 2.0245 7 7 1.8133 4.9448 2.4749 8 6 1.2949 5.8450 1.4363 9 6 2.0418 5.6684 3.7327 10 6 0.7220 6.1362 4.2899 11 6 0.2291 7.3828 3.9364 12 6 -0.9777 7.8179 4.4346 13 6 -1.7060 6.9971 5.3155 14 6 -2.9439 7.4364 5.8390 15 1 -3.3086 7.0343 6.7726 16 6 -3.6964 8.3924 5.1474 17 7 -3.4559 8.6242 3.8826 18 14 -5.0442 9.3375 6.0304 19 1 -5.1158 8.8921 7.4452 20 1 -4.7424 10.7907 5.9830 21 1 -6.3465 9.0804 5.3646 22 6 -1.1932 5.7361 5.6720 23 6 0.0126 5.3189 5.1563 24 6 2.8365 3.7121 -0.4007 25 16 2.3587 2.3433 -1.4020 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.7628 5.0177 1.6953 32 1 3.4606 3.6954 2.8479 33 1 1.0685 5.2709 0.5378 34 1 0.3871 6.3297 1.7957 35 1 2.0440 6.6020 1.2046 36 1 2.5248 5.0056 4.4506 37 1 2.6827 6.5298 3.5450 38 1 0.7924 8.0132 3.2642 39 1 -1.3619 8.7875 4.1543 40 1 -3.9772 9.2871 3.4032 41 1 -1.7437 5.0984 6.3476 42 1 0.4083 4.3517 5.4288 43 1 3.1718 4.6745 -0.7582 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399129017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:12 Heat of formation + Delta-G solvation = 58.662604 kcal Electronic energy + Delta-G solvation = -23066.139443 eV Core-core repulsion = 19816.401963 eV Total energy + Delta-G solvation = -3249.737480 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.04537 -38.03131 -36.41564 -34.22104 -33.53204 -30.82639 -29.55540 -29.27472 -27.49532 -27.01808 -25.43531 -24.36225 -22.33251 -21.25577 -20.81078 -19.75625 -19.65304 -17.60856 -17.25436 -15.74452 -15.53155 -15.28208 -14.84175 -14.78110 -14.53620 -14.20826 -13.89806 -13.49125 -13.33503 -13.20997 -12.76554 -12.44373 -12.33548 -12.10422 -11.91273 -11.78801 -11.57963 -11.32865 -11.29487 -11.22513 -11.12106 -10.99404 -10.89248 -10.48129 -10.27909 -9.61526 -9.52916 -9.40775 -9.34608 -9.10836 -8.79010 -7.91363 -7.38502 -7.24509 -6.73450 -4.31319 0.67148 1.31802 1.68122 2.68015 2.83762 3.08265 3.12725 3.14034 3.21681 3.95002 3.96118 4.42561 4.72496 4.77424 4.93267 5.04144 5.09708 5.25486 5.38448 5.49861 5.62037 5.62522 5.70525 5.75512 5.78367 5.86671 5.95227 6.03091 6.11227 6.15449 6.28638 6.41016 6.46521 6.50732 6.98617 7.10720 7.29214 7.41725 7.45644 7.47947 7.66499 7.81360 7.93348 8.09529 8.18844 8.34699 8.67933 8.93458 9.01990 10.20870 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.002732 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.751622 B =10247.836256 C =10663.021499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C 0.053 3.947 4 N -0.451 5.451 5 C 0.092 3.908 6 C 0.125 3.875 7 N -0.526 5.526 8 C 0.024 3.976 9 C 0.122 3.878 10 C -0.207 4.207 11 C -0.094 4.094 12 C -0.167 4.167 13 C 0.112 3.888 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.793 5.793 18 Si 0.906 3.094 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.275 1.275 22 C -0.228 4.228 23 C -0.067 4.067 24 C -0.258 4.258 25 S 0.096 5.904 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.016 0.984 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.279 0.721 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.831 -10.327 -10.638 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.086 4.086 3 C -0.225 4.225 4 N -0.165 5.165 5 C -0.040 4.040 6 C -0.006 4.006 7 N -0.250 5.250 8 C -0.124 4.124 9 C -0.004 4.004 10 C -0.209 4.209 11 C -0.113 4.113 12 C -0.186 4.186 13 C 0.110 3.890 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.419 5.419 18 Si 0.730 3.270 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.200 1.200 22 C -0.248 4.248 23 C -0.086 4.086 24 C -0.397 4.397 25 S 0.351 5.649 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.035 0.965 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.100 0.900 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 10.260 -10.974 -11.313 18.806 hybrid contribution 0.058 1.764 0.645 1.879 sum 10.317 -9.210 -10.668 17.466 Atomic orbital electron populations 1.21777 0.93328 1.02461 1.03108 1.20207 0.96910 0.87547 1.03955 1.27099 1.03043 1.01743 0.90659 1.66049 1.13434 1.05908 1.31129 1.20159 0.99036 0.91084 0.93753 1.20602 0.91862 0.94068 0.94050 1.62039 1.27229 1.31607 1.04122 1.22446 1.00770 0.94623 0.94575 1.20757 0.95540 0.94816 0.89272 1.18810 0.98392 0.96996 1.06675 1.20508 0.96347 0.95142 0.99288 1.21267 0.94014 1.00611 1.02721 1.17622 0.91896 0.89722 0.89790 1.19628 1.03016 1.19586 1.06992 0.90491 1.25903 0.98168 0.95838 0.94243 1.69843 1.36519 1.27451 1.08044 0.86304 0.80144 0.79651 0.80871 1.18412 1.19759 1.20042 1.20968 0.98459 0.97325 1.08015 1.20329 0.94781 0.96739 0.96754 1.26801 1.13165 1.03925 0.95851 1.83818 1.61378 1.06190 1.13500 0.92446 0.91477 0.91485 0.89936 0.88810 0.93691 0.89360 0.92597 0.89619 0.96546 0.91609 0.95751 0.89965 0.86600 0.91036 0.89160 0.89480 0.80967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 37.16 0.37 -0.97 16 2 C -0.05 -0.41 6.52 -27.88 -0.18 -0.59 16 3 C 0.05 0.65 6.64 -13.46 -0.09 0.56 16 4 N -0.45 -6.78 10.53 -8.06 -0.08 -6.86 16 5 C 0.09 1.31 5.58 -84.23 -0.47 0.84 16 6 C 0.12 1.79 5.41 -4.97 -0.03 1.76 16 7 N -0.53 -9.10 4.74 -245.82 -1.17 -10.26 16 8 C 0.02 0.40 8.91 60.07 0.54 0.94 16 9 C 0.12 2.20 5.11 -4.98 -0.03 2.17 16 10 C -0.21 -4.53 4.91 -104.33 -0.51 -5.04 16 11 C -0.09 -2.18 7.87 -39.66 -0.31 -2.49 16 12 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 13 C 0.11 3.03 5.58 -106.82 -0.60 2.44 16 14 C -0.46 -12.45 9.05 -37.74 -0.34 -12.79 16 15 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 16 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -20.69 10.95 55.55 0.61 -20.08 16 18 Si 0.91 18.84 29.60 -169.99 -5.03 13.81 16 19 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 C -0.23 -5.75 9.80 -38.87 -0.38 -6.13 16 23 C -0.07 -1.55 9.67 -39.66 -0.38 -1.94 16 24 C -0.26 -3.12 9.86 29.12 0.29 -2.83 16 25 S 0.10 1.02 23.18 -107.50 -2.49 -1.47 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 33 H 0.06 0.90 6.46 -51.93 -0.34 0.56 16 34 H 0.09 1.70 5.90 -51.93 -0.31 1.39 16 35 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 37 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 38 H 0.08 1.73 7.99 -52.49 -0.42 1.32 16 39 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 41 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 42 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 366.63 15.07 5.52 5.52 Total: -1.00 -29.12 366.63 -11.59 -40.72 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.40 Total: 5.54 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -2.56 Total: -26.92 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.64 Total: -37.21 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.12 -11.59 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399129017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.379 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds