Wall clock time and date at job start Tue Mar 31 2020 11:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47481 * 2 1 4 4 N 1.29025 * 124.91824 * 89.99223 * 3 2 1 5 5 C 1.31781 * 117.12497 * 180.02562 * 4 3 2 6 6 C 1.50696 * 122.74891 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.47238 * 275.02076 * 6 5 4 8 8 C 1.46902 * 110.99491 * 293.95608 * 7 6 5 9 9 C 1.46895 * 111.00356 * 170.00154 * 7 6 5 10 10 C 1.50705 * 109.46995 * 190.00230 * 9 7 6 11 11 C 1.38632 * 119.74270 * 269.72266 * 10 9 7 12 12 C 1.37621 * 120.24360 * 179.72209 * 11 10 9 13 13 C 1.40717 * 119.74376 * 0.57397 * 12 11 10 14 14 C 1.41398 * 120.24552 * 179.68253 * 13 12 11 15 15 H 1.07997 * 120.00121 * 204.40450 * 14 13 12 16 16 C 1.39948 * 120.00051 * 24.39945 * 14 13 12 17 17 N 1.30825 * 119.99887 * 17.85874 * 16 14 13 18 18 Si 1.86798 * 120.00139 * 197.86264 * 16 14 13 19 19 H 1.48496 * 109.47266 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47314 * 120.00242 * 18 16 14 21 21 H 1.48504 * 109.46637 * 239.99942 * 18 16 14 22 22 C 1.40719 * 119.51224 * 359.70490 * 13 12 11 23 23 C 1.37618 * 119.74074 * 359.97438 * 22 13 12 24 24 C 1.33634 * 114.49696 * 0.22994 * 5 4 3 25 25 S 1.70974 * 124.91285 * 269.99884 * 3 2 1 26 26 H 1.09001 * 109.46741 * 60.00356 * 1 2 3 27 27 H 1.09003 * 109.46868 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47602 * 300.00499 * 1 2 3 29 29 H 1.08997 * 109.47602 * 239.99501 * 2 1 3 30 30 H 1.09001 * 109.46741 * 119.99644 * 2 1 3 31 31 H 1.09000 * 109.47521 * 155.02326 * 6 5 4 32 32 H 1.08999 * 109.47684 * 35.01844 * 6 5 4 33 33 H 1.09001 * 109.47233 * 60.00130 * 8 7 6 34 34 H 1.09007 * 109.46519 * 179.97438 * 8 7 6 35 35 H 1.08992 * 109.47355 * 299.99362 * 8 7 6 36 36 H 1.09001 * 109.46808 * 309.99700 * 9 7 6 37 37 H 1.08995 * 109.47042 * 70.00002 * 9 7 6 38 38 H 1.07997 * 119.88165 * 359.97438 * 11 10 9 39 39 H 1.08000 * 120.12614 * 180.28072 * 12 11 10 40 40 H 0.97000 * 120.00350 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.12338 * 179.97438 * 22 13 12 42 42 H 1.08000 * 119.86795 * 179.97438 * 23 22 13 43 43 H 1.08001 * 126.03404 * 179.77324 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7133 3.3483 0.8793 6 6 3.0391 4.2720 2.0245 7 7 1.8133 4.9448 2.4749 8 6 1.2949 5.8450 1.4363 9 6 2.0418 5.6684 3.7327 10 6 0.7220 6.1362 4.2899 11 6 0.2291 7.3828 3.9364 12 6 -0.9777 7.8179 4.4346 13 6 -1.7060 6.9971 5.3155 14 6 -2.9439 7.4364 5.8390 15 1 -3.3086 7.0343 6.7726 16 6 -3.6964 8.3924 5.1474 17 7 -3.4559 8.6242 3.8826 18 14 -5.0442 9.3375 6.0304 19 1 -5.1158 8.8921 7.4452 20 1 -4.7424 10.7907 5.9830 21 1 -6.3465 9.0804 5.3646 22 6 -1.1932 5.7361 5.6720 23 6 0.0126 5.3189 5.1563 24 6 2.8365 3.7121 -0.4007 25 16 2.3587 2.3433 -1.4020 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.7628 5.0177 1.6953 32 1 3.4606 3.6954 2.8479 33 1 1.0685 5.2709 0.5378 34 1 0.3871 6.3297 1.7957 35 1 2.0440 6.6020 1.2046 36 1 2.5248 5.0056 4.4506 37 1 2.6827 6.5298 3.5450 38 1 0.7924 8.0132 3.2642 39 1 -1.3619 8.7875 4.1543 40 1 -3.9772 9.2871 3.4032 41 1 -1.7437 5.0984 6.3476 42 1 0.4083 4.3517 5.4288 43 1 3.1718 4.6745 -0.7582 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399129017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:11 Heat of formation + Delta-G solvation = 42.827702 kcal Electronic energy + Delta-G solvation = -23066.826096 eV Core-core repulsion = 19816.401963 eV Total energy + Delta-G solvation = -3250.424133 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.02781 -39.72689 -37.88652 -35.59898 -34.84691 -32.39065 -31.18290 -30.77888 -28.74638 -28.56115 -26.44176 -25.85002 -23.65722 -22.78448 -22.25983 -21.41584 -20.65182 -19.21180 -18.54919 -17.19161 -16.81962 -16.65468 -16.19856 -16.05461 -15.68644 -15.44594 -15.24294 -15.02546 -14.77987 -14.29000 -14.12903 -13.82850 -13.78279 -13.41064 -13.22392 -13.15813 -12.86461 -12.80224 -12.60609 -12.59708 -12.52362 -12.34664 -12.03285 -12.00494 -11.97995 -11.37287 -11.24007 -11.00109 -10.52572 -10.31284 -9.72061 -9.35048 -9.22508 -9.08551 -8.62755 -6.31977 -0.23108 0.46190 0.77604 0.94795 1.17744 1.37190 1.48242 1.52687 1.80189 2.20940 2.69493 3.12292 3.29990 3.80472 3.87236 4.14925 4.19050 4.23087 4.30292 4.32544 4.33356 4.46336 4.51487 4.59528 4.61563 4.69090 4.72066 4.79775 4.86649 4.97073 5.05317 5.06780 5.09041 5.17374 5.18138 5.33628 5.39185 5.49775 5.72676 5.96906 6.09315 6.11704 6.22906 6.32307 6.41843 6.72167 6.89666 6.95990 7.06058 8.34052 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.002732 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.751622 B =10247.836256 C =10663.021499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C 0.038 3.962 4 N -0.492 5.492 5 C 0.066 3.934 6 C 0.129 3.871 7 N -0.545 5.545 8 C 0.032 3.968 9 C 0.128 3.872 10 C -0.194 4.194 11 C -0.091 4.091 12 C -0.190 4.190 13 C 0.080 3.920 14 C -0.503 4.503 15 H 0.072 0.928 16 C 0.035 3.965 17 N -0.826 5.826 18 Si 0.982 3.018 19 H -0.259 1.259 20 H -0.263 1.263 21 H -0.266 1.266 22 C -0.246 4.246 23 C -0.073 4.073 24 C -0.261 4.261 25 S 0.146 5.854 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.036 0.964 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.287 0.713 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.082 -10.873 -12.162 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.240 4.240 4 N -0.207 5.207 5 C -0.066 4.066 6 C 0.000 4.000 7 N -0.269 5.269 8 C -0.116 4.116 9 C 0.001 3.999 10 C -0.195 4.195 11 C -0.110 4.110 12 C -0.209 4.209 13 C 0.078 3.922 14 C -0.533 4.533 15 H 0.090 0.910 16 C -0.179 4.179 17 N -0.452 5.452 18 Si 0.802 3.198 19 H -0.183 1.183 20 H -0.187 1.187 21 H -0.191 1.191 22 C -0.266 4.266 23 C -0.092 4.092 24 C -0.401 4.401 25 S 0.402 5.598 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.055 0.945 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.126 0.874 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 11.529 -11.540 -12.852 20.767 hybrid contribution -0.199 1.803 0.981 2.062 sum 11.330 -9.737 -11.871 19.081 Atomic orbital electron populations 1.21754 0.93476 1.03498 1.01626 1.20365 0.96647 0.86274 1.05373 1.27610 1.02466 1.02855 0.91039 1.66051 1.14972 1.06740 1.32911 1.20190 1.00707 0.91271 0.94428 1.20588 0.90750 0.94303 0.94391 1.61871 1.29472 1.31641 1.03945 1.22302 0.99822 0.94985 0.94468 1.20679 0.93172 0.95925 0.90084 1.19253 0.99505 0.95896 1.04861 1.20726 0.95470 0.95951 0.98853 1.21241 0.95456 1.00269 1.03969 1.17954 0.92670 0.90731 0.90879 1.19846 1.04024 1.21831 1.07551 0.91017 1.26746 1.00400 0.96055 0.94740 1.69891 1.37888 1.28101 1.09291 0.85173 0.77007 0.78213 0.79374 1.18308 1.18725 1.19054 1.21147 0.99649 0.97107 1.08698 1.20615 0.94193 0.97754 0.96641 1.27102 1.12089 1.05236 0.95681 1.83610 1.59922 1.04608 1.11689 0.92315 0.89232 0.94467 0.87015 0.88884 0.91431 0.89496 0.92104 0.93089 0.94407 0.90228 0.94048 0.87869 0.88268 0.90235 0.89071 0.87432 0.79098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.89 71.98 0.71 -1.74 16 2 C -0.05 -0.75 6.52 29.85 0.19 -0.55 16 3 C 0.04 0.87 6.64 88.52 0.59 1.46 16 4 N -0.49 -14.26 10.53 -179.41 -1.89 -16.15 16 5 C 0.07 1.77 5.58 41.52 0.23 2.01 16 6 C 0.13 3.43 5.41 85.55 0.46 3.89 16 7 N -0.54 -17.88 4.74 -931.65 -4.42 -22.30 16 8 C 0.03 1.04 8.91 127.69 1.14 2.18 16 9 C 0.13 4.32 5.11 85.56 0.44 4.76 16 10 C -0.19 -8.35 4.91 -19.68 -0.10 -8.44 16 11 C -0.09 -4.24 7.87 22.22 0.17 -4.07 16 12 C -0.19 -10.25 8.70 22.73 0.20 -10.05 16 13 C 0.08 4.50 5.58 -21.29 -0.12 4.38 16 14 C -0.50 -28.27 9.05 23.46 0.21 -28.06 16 15 H 0.07 3.93 7.91 -2.91 -0.02 3.90 16 16 C 0.04 1.83 5.14 85.26 0.44 2.26 16 17 N -0.83 -44.38 10.95 21.83 0.24 -44.14 16 18 Si 0.98 39.34 29.60 68.60 2.03 41.37 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 22 C -0.25 -12.82 9.80 22.73 0.22 -12.60 16 23 C -0.07 -3.39 9.67 22.22 0.21 -3.18 16 24 C -0.26 -5.67 9.86 66.77 0.66 -5.01 16 25 S 0.15 2.73 23.18 -56.49 -1.31 1.42 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.47 8.08 -2.39 -0.02 1.45 16 32 H 0.09 2.29 7.93 -2.39 -0.02 2.27 16 33 H 0.06 1.87 6.46 -2.39 -0.02 1.85 16 34 H 0.05 1.99 5.90 -2.38 -0.01 1.98 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 2.48 7.87 -2.39 -0.02 2.47 16 37 H 0.04 1.27 8.06 -2.39 -0.02 1.25 16 38 H 0.10 4.28 7.99 -2.91 -0.02 4.25 16 39 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 40 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 41 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -65.38 366.63 1.31 -64.07 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.99 Total: 28.49 kcal Atomic # 6 Polarization: -58.43 SS G_CDS: 5.67 Total: -52.76 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -6.07 Total: -82.59 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.31 Total: 1.42 kcal Total: -65.38 1.31 -64.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399129017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.894 kcal (2) G-P(sol) polarization free energy of solvation -65.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds